Wall clock time and date at job start Tue Mar 31 2020 12:02:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09002 * 109.71019 * 2 1 4 4 C 1.53706 * 109.83649 * 239.27962 * 2 1 3 5 5 H 1.09003 * 109.65683 * 172.89285 * 4 2 1 6 6 C 1.53003 * 109.44230 * 52.69496 * 4 2 1 7 7 O 1.42957 * 109.15067 * 292.86046 * 4 2 1 8 8 C 1.42968 * 114.16740 * 297.28611 * 7 4 2 9 9 C 1.53300 * 109.22015 * 62.58005 * 8 7 4 10 10 N 1.47150 * 108.38443 * 307.70055 * 9 8 7 11 11 C 1.34772 * 120.98086 * 230.51075 * 10 9 8 12 12 O 1.21288 * 120.00120 * 180.02562 * 11 10 9 13 13 C 1.50699 * 120.00272 * 0.02562 * 11 10 9 14 14 C 1.50701 * 109.47342 * 180.02562 * 13 11 10 15 15 C 1.38303 * 119.92906 * 89.99960 * 14 13 11 16 16 C 1.38108 * 120.06534 * 179.97438 * 15 14 13 17 17 C 1.38877 * 119.93181 * 359.97438 * 16 15 14 18 18 O 1.35747 * 120.06827 * 179.97438 * 17 16 15 19 19 C 1.34822 * 117.00161 * 5.53068 * 18 17 16 20 20 H 1.08004 * 120.00204 * 354.94245 * 19 18 17 21 21 C 1.38654 * 120.00200 * 174.94014 * 19 18 17 22 22 N 1.31553 * 119.99993 * 359.72918 * 21 19 18 23 23 Si 1.86806 * 120.00148 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.46984 * 269.72940 * 23 21 19 25 25 H 1.48494 * 109.46924 * 29.72745 * 23 21 19 26 26 H 1.48496 * 109.47216 * 149.72739 * 23 21 19 27 27 C 1.38884 * 119.86025 * 0.25082 * 17 16 15 28 28 C 1.38097 * 119.93210 * 359.49481 * 27 17 16 29 29 H 1.08999 * 109.46815 * 299.46338 * 1 2 3 30 30 H 1.08991 * 109.46900 * 59.46841 * 1 2 3 31 31 H 1.09000 * 109.47187 * 179.46677 * 1 2 3 32 32 H 1.08994 * 109.47232 * 300.38473 * 6 4 2 33 33 H 1.09007 * 109.47004 * 60.38805 * 6 4 2 34 34 H 1.09001 * 109.47281 * 180.38283 * 6 4 2 35 35 H 1.09005 * 109.50938 * 302.65970 * 8 7 4 36 36 H 1.08990 * 109.55752 * 182.53340 * 8 7 4 37 37 H 1.09000 * 109.68086 * 187.98032 * 9 8 7 38 38 H 1.08997 * 109.67763 * 67.42381 * 9 8 7 39 39 H 1.08991 * 109.47054 * 59.99786 * 13 11 10 40 40 H 1.09003 * 109.46999 * 299.99778 * 13 11 10 41 41 H 1.07995 * 119.96803 * 359.95243 * 15 14 13 42 42 H 1.07998 * 120.03431 * 180.02562 * 16 15 14 43 43 H 0.97007 * 120.00140 * 0.27194 * 22 21 19 44 44 H 1.07997 * 120.03119 * 179.72764 * 27 17 16 45 45 H 1.08003 * 119.96612 * 180.23034 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8977 1.0262 0.0000 4 6 2.0516 -0.7386 -1.2430 5 1 3.1342 -0.6291 -1.3072 6 6 1.4019 -0.1484 -2.4961 7 8 1.7173 -2.1247 -1.1396 8 6 2.3218 -2.7913 -0.0287 9 6 1.8190 -2.1587 1.2741 10 7 2.0256 -0.7040 1.1935 11 6 2.6454 -0.0353 2.1860 12 8 2.8059 1.1640 2.1013 13 6 3.1391 -0.7775 3.4010 14 6 3.7889 0.1933 4.3531 15 6 3.0305 0.8166 5.3273 16 6 3.6232 1.7063 6.2017 17 6 4.9822 1.9744 6.1022 18 8 5.5675 2.8489 6.9598 19 6 4.8004 3.3355 7.9560 20 1 3.7492 3.0910 7.9969 21 6 5.3610 4.1500 8.9281 22 7 6.6425 4.4435 8.8814 23 14 4.2979 4.8249 10.3080 24 1 3.7296 6.1346 9.8996 25 1 3.1940 3.8734 10.5929 26 1 5.1252 5.0030 11.5283 27 6 5.7401 1.3504 5.1198 28 6 5.1426 0.4577 4.2519 29 1 -0.3633 0.5055 0.8948 30 1 -0.3633 0.5220 -0.8851 31 1 -0.3633 -1.0276 -0.0096 32 1 0.3194 -0.2566 -2.4295 33 1 1.6573 0.9085 -2.5744 34 1 1.7663 -0.6763 -3.3774 35 1 3.4054 -2.6892 -0.0885 36 1 2.0542 -3.8477 -0.0474 37 1 2.3782 -2.5627 2.1180 38 1 0.7577 -2.3723 1.4001 39 1 3.8663 -1.5301 3.0964 40 1 2.2986 -1.2638 3.8961 41 1 1.9738 0.6077 5.4042 42 1 3.0306 2.1925 6.9625 43 1 7.1945 4.0933 8.1646 44 1 6.7962 1.5601 5.0372 45 1 5.7322 -0.0307 3.4901 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000167506425.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:02:51 Heat of formation + Delta-G solvation = -108.323841 kcal Electronic energy + Delta-G solvation = -26656.926876 eV Core-core repulsion = 22832.165308 eV Total energy + Delta-G solvation = -3824.761567 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.68303 -40.86456 -39.62231 -38.29513 -35.95015 -34.93291 -34.41839 -32.78567 -31.88202 -30.08089 -29.72402 -28.09951 -26.84145 -25.45496 -24.36478 -23.66676 -22.82258 -21.40460 -20.27918 -19.79000 -18.74939 -18.39791 -17.72299 -17.19904 -16.98465 -16.50697 -16.30593 -16.06174 -15.71816 -15.66648 -15.58757 -15.19415 -14.97866 -14.78572 -14.43304 -14.12661 -14.03552 -13.74106 -13.21348 -13.05462 -12.97963 -12.87919 -12.78297 -12.68619 -12.58831 -12.42782 -12.32541 -12.08363 -11.96889 -11.93311 -11.50116 -11.30367 -11.14185 -10.86500 -10.70321 -9.86438 -9.57042 -9.02581 -8.95912 -6.26600 0.51337 0.56567 1.46521 1.59840 1.60453 1.76047 1.86277 2.33985 2.74804 2.80105 3.09132 3.30903 3.53380 3.67529 3.82613 3.91524 3.94727 4.03619 4.08543 4.09994 4.21949 4.33760 4.35664 4.38855 4.44944 4.51232 4.58914 4.67637 4.72099 4.74115 4.86470 4.88285 4.93310 4.96702 4.97084 5.16720 5.18559 5.21526 5.30236 5.44971 5.50867 5.66620 5.69967 6.02213 6.16613 6.25520 6.34848 6.84536 7.16286 7.60376 8.48150 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.028984 B = 0.002403 C = 0.002363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.830726 B =11648.398483 C =11847.167021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.103 3.897 3 H 0.078 0.922 4 C 0.085 3.915 5 H 0.053 0.947 6 C -0.145 4.145 7 O -0.385 6.385 8 C 0.043 3.957 9 C 0.065 3.935 10 N -0.615 5.615 11 C 0.512 3.488 12 O -0.580 6.580 13 C -0.076 4.076 14 C -0.142 4.142 15 C -0.060 4.060 16 C -0.241 4.241 17 C 0.115 3.885 18 O -0.253 6.253 19 C -0.488 4.488 20 H 0.090 0.910 21 C -0.045 4.045 22 N -0.917 5.917 23 Si 1.148 2.852 24 H -0.265 1.265 25 H -0.258 1.258 26 H -0.270 1.270 27 C -0.205 4.205 28 C -0.057 4.057 29 H 0.042 0.958 30 H 0.084 0.916 31 H 0.071 0.929 32 H 0.076 0.924 33 H 0.078 0.922 34 H 0.072 0.928 35 H 0.056 0.944 36 H 0.134 0.866 37 H 0.122 0.878 38 H 0.089 0.911 39 H 0.132 0.868 40 H 0.128 0.872 41 H 0.138 0.862 42 H 0.116 0.884 43 H 0.260 0.740 44 H 0.114 0.886 45 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.017 -19.073 -20.493 31.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.001 4.001 3 H 0.097 0.903 4 C 0.027 3.973 5 H 0.071 0.929 6 C -0.202 4.202 7 O -0.304 6.304 8 C -0.033 4.033 9 C -0.057 4.057 10 N -0.349 5.349 11 C 0.302 3.698 12 O -0.459 6.459 13 C -0.115 4.115 14 C -0.143 4.143 15 C -0.078 4.078 16 C -0.260 4.260 17 C 0.065 3.935 18 O -0.161 6.161 19 C -0.564 4.564 20 H 0.107 0.893 21 C -0.241 4.241 22 N -0.552 5.552 23 Si 0.964 3.036 24 H -0.191 1.191 25 H -0.183 1.183 26 H -0.195 1.195 27 C -0.225 4.225 28 C -0.075 4.075 29 H 0.062 0.938 30 H 0.103 0.897 31 H 0.090 0.910 32 H 0.095 0.905 33 H 0.097 0.903 34 H 0.091 0.909 35 H 0.074 0.926 36 H 0.152 0.848 37 H 0.140 0.860 38 H 0.107 0.893 39 H 0.150 0.850 40 H 0.146 0.854 41 H 0.155 0.845 42 H 0.133 0.867 43 H 0.068 0.932 44 H 0.132 0.868 45 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -13.782 -17.511 -19.294 29.476 hybrid contribution 0.619 -0.232 -1.025 1.220 sum -13.164 -17.743 -20.319 30.016 Atomic orbital electron populations 1.22002 0.93170 1.03107 1.02376 1.21969 0.96001 0.97124 0.85004 0.90347 1.22492 0.98290 0.81876 0.94675 0.92904 1.21846 1.02172 1.01003 0.95189 1.87944 1.72319 1.21699 1.48440 1.23188 0.97478 0.98241 0.84441 1.22769 1.03865 0.78183 1.00858 1.48411 1.57881 1.09458 1.19146 1.21250 0.76679 0.87358 0.84466 1.90739 1.57916 1.17203 1.80011 1.20573 1.03027 0.96812 0.91110 1.19270 0.93524 1.02685 0.98829 1.20930 0.99611 0.93924 0.93321 1.21237 0.94391 1.05531 1.04879 1.19818 0.92918 0.89681 0.91073 1.83636 1.41021 1.53600 1.37851 1.22616 0.94677 1.33707 1.05401 0.89295 1.28435 0.98880 0.94830 1.01968 1.70680 1.06440 1.43979 1.34126 0.82544 0.72916 0.76734 0.71439 1.19052 1.18256 1.19517 1.20448 0.99793 1.03064 0.99144 1.20876 0.94808 0.95326 0.96471 0.93844 0.89746 0.90977 0.90528 0.90306 0.90919 0.92594 0.84802 0.86004 0.89302 0.84986 0.85368 0.84453 0.86653 0.93192 0.86752 0.83409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.33 8.64 71.98 0.62 -1.70 16 2 C 0.10 1.93 2.86 45.11 0.13 2.06 16 3 H 0.08 1.93 7.08 -2.39 -0.02 1.92 16 4 C 0.09 1.32 3.12 30.83 0.10 1.41 16 5 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 6 C -0.14 -1.69 9.03 71.98 0.65 -1.04 16 7 O -0.39 -5.56 10.01 -148.98 -1.49 -7.06 16 8 C 0.04 0.40 6.99 72.08 0.50 0.90 16 9 C 0.06 0.63 6.14 86.36 0.53 1.16 16 10 N -0.61 -11.31 2.71 -792.73 -2.15 -13.46 16 11 C 0.51 13.00 7.70 87.66 0.68 13.67 16 12 O -0.58 -21.49 15.50 -3.05 -0.05 -21.54 16 13 C -0.08 -1.53 4.20 29.10 0.12 -1.41 16 14 C -0.14 -4.55 4.38 -19.83 -0.09 -4.64 16 15 C -0.06 -2.20 9.69 22.25 0.22 -1.99 16 16 C -0.24 -11.31 9.17 22.39 0.21 -11.10 16 17 C 0.11 6.04 6.65 22.58 0.15 6.19 16 18 O -0.25 -15.78 9.16 -22.63 -0.21 -15.99 16 19 C -0.49 -29.79 9.49 67.92 0.64 -29.15 16 20 H 0.09 5.09 5.20 -2.91 -0.02 5.08 16 21 C -0.05 -2.69 5.49 84.83 0.47 -2.23 16 22 N -0.92 -59.07 13.70 21.61 0.30 -58.78 16 23 Si 1.15 49.73 29.92 68.60 2.05 51.78 16 24 H -0.27 -10.72 7.11 99.48 0.71 -10.02 16 25 H -0.26 -10.01 7.11 99.48 0.71 -9.31 16 26 H -0.27 -11.36 7.11 99.48 0.71 -10.66 16 27 C -0.21 -9.19 9.99 22.39 0.22 -8.97 16 28 C -0.06 -2.00 9.69 22.25 0.22 -1.78 16 29 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.08 1.07 6.45 -2.39 -0.02 1.05 16 31 H 0.07 1.00 7.21 -2.39 -0.02 0.98 16 32 H 0.08 0.80 6.37 -2.39 -0.02 0.79 16 33 H 0.08 0.85 8.14 -2.38 -0.02 0.83 16 34 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 35 H 0.06 0.53 8.14 -2.38 -0.02 0.51 16 36 H 0.13 0.50 8.14 -2.39 -0.02 0.48 16 37 H 0.12 0.58 6.05 -2.39 -0.01 0.57 16 38 H 0.09 0.72 7.65 -2.39 -0.02 0.70 16 39 H 0.13 1.72 7.60 -2.39 -0.02 1.70 16 40 H 0.13 1.80 7.96 -2.39 -0.02 1.78 16 41 H 0.14 4.11 8.06 -2.91 -0.02 4.09 16 42 H 0.12 5.56 5.64 -2.91 -0.02 5.55 16 43 H 0.26 17.45 7.97 -92.70 -0.74 16.71 16 44 H 0.11 4.98 8.06 -2.91 -0.02 4.96 16 45 H 0.15 4.00 8.06 -2.91 -0.02 3.98 16 Total: -1.00 -84.38 363.76 4.85 -79.54 By element: Atomic # 1 Polarization: 23.08 SS G_CDS: 1.03 Total: 24.11 kcal Atomic # 6 Polarization: -43.97 SS G_CDS: 5.36 Total: -38.61 kcal Atomic # 7 Polarization: -70.39 SS G_CDS: -1.85 Total: -72.24 kcal Atomic # 8 Polarization: -42.84 SS G_CDS: -1.75 Total: -44.58 kcal Atomic # 14 Polarization: 49.73 SS G_CDS: 2.05 Total: 51.78 kcal Total: -84.38 4.85 -79.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000167506425.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.785 kcal (2) G-P(sol) polarization free energy of solvation -84.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds