Wall clock time and date at job start Tue Mar 31 2020 13:00:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47481 * 2 1 4 4 O 1.45201 * 109.47018 * 119.99808 * 2 1 3 5 5 C 1.34228 * 117.00162 * 149.99784 * 4 2 1 6 6 O 1.20829 * 119.99959 * 0.02562 * 5 4 2 7 7 C 1.50700 * 120.00240 * 180.02562 * 5 4 2 8 8 H 1.09003 * 109.47057 * 60.00292 * 7 5 4 9 9 C 1.52997 * 109.46859 * 300.00232 * 7 5 4 10 10 C 1.53004 * 109.46941 * 180.02562 * 7 5 4 11 11 N 1.46506 * 109.46797 * 185.00007 * 10 7 5 12 12 C 1.34775 * 119.99973 * 179.97438 * 11 10 7 13 13 O 1.21547 * 119.99802 * 0.02562 * 12 11 10 14 14 C 1.47879 * 120.00037 * 179.97438 * 12 11 10 15 15 C 1.39920 * 120.02810 * 359.72699 * 14 12 11 16 16 C 1.38330 * 120.36187 * 180.25390 * 15 14 12 17 17 C 1.37748 * 120.41267 * 0.04683 * 16 15 14 18 18 C 1.40754 * 120.03727 * 359.94935 * 17 16 15 19 19 C 1.41439 * 120.17668 * 180.02562 * 18 17 16 20 20 H 1.08000 * 119.99985 * 334.93866 * 19 18 17 21 21 C 1.39935 * 120.00166 * 154.93750 * 19 18 17 22 22 N 1.30825 * 119.99735 * 342.57551 * 21 19 18 23 23 Si 1.86796 * 120.00048 * 162.57966 * 21 19 18 24 24 H 1.48491 * 109.47177 * 359.97438 * 23 21 19 25 25 H 1.48500 * 109.47184 * 120.00100 * 23 21 19 26 26 H 1.48498 * 109.47087 * 239.99714 * 23 21 19 27 27 C 1.38997 * 120.02584 * 180.02562 * 14 12 11 28 28 H 1.09003 * 109.47061 * 300.00194 * 1 2 3 29 29 H 1.09005 * 109.46459 * 60.00183 * 1 2 3 30 30 H 1.08994 * 109.46962 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47749 * 240.00095 * 2 1 3 32 32 H 1.09008 * 109.46942 * 59.99418 * 3 2 1 33 33 H 1.08997 * 109.47279 * 179.97438 * 3 2 1 34 34 H 1.08998 * 109.46959 * 300.00081 * 3 2 1 35 35 H 1.08998 * 109.47675 * 299.99570 * 9 7 5 36 36 H 1.08997 * 109.47523 * 60.00153 * 9 7 5 37 37 H 1.09006 * 109.46946 * 180.02562 * 9 7 5 38 38 H 1.08994 * 109.47349 * 65.00317 * 10 7 5 39 39 H 1.08998 * 109.47106 * 304.99525 * 10 7 5 40 40 H 0.96997 * 120.00148 * 359.97438 * 11 10 7 41 41 H 1.08004 * 119.81485 * 0.27417 * 15 14 12 42 42 H 1.08000 * 119.79344 * 179.97438 * 16 15 14 43 43 H 1.07993 * 119.98273 * 179.97438 * 17 16 15 44 44 H 0.96995 * 120.00017 * 179.97438 * 22 21 19 45 45 H 1.07997 * 120.20311 * 359.70752 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0140 -0.6844 1.1856 5 6 3.1936 -1.3170 1.0852 6 8 3.8019 -1.2990 0.0414 7 6 3.7593 -2.0497 2.2744 8 1 3.0661 -2.8325 2.5823 9 6 3.9640 -1.0667 3.4288 10 6 5.1023 -2.6772 1.8952 11 7 5.5951 -3.4878 3.0116 12 6 6.7693 -4.1405 2.9037 13 8 7.4196 -4.0561 1.8803 14 6 7.2670 -4.9582 4.0308 15 6 6.5221 -5.0502 5.2117 16 6 6.9837 -5.8090 6.2722 17 6 8.1820 -6.4819 6.1787 18 6 8.9451 -6.4014 4.9988 19 6 10.1757 -7.0916 4.8994 20 1 10.7321 -7.3348 5.7926 21 6 10.6723 -7.4593 3.6439 22 7 9.8756 -7.4822 2.6065 23 14 12.4727 -7.9177 3.4493 24 1 13.1552 -7.8121 4.7638 25 1 12.5772 -9.3114 2.9473 26 1 13.1169 -6.9936 2.4818 27 6 8.4782 -5.6312 3.9202 28 1 -0.3633 0.5139 0.8900 29 1 -0.3632 0.5138 -0.8901 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.6766 1.9564 0.8900 33 1 3.1300 1.4424 0.0005 34 1 1.6768 1.9563 -0.8900 35 1 4.6572 -0.2839 3.1210 36 1 3.0076 -0.6193 3.6991 37 1 4.3737 -1.5966 4.2889 38 1 5.8217 -1.8891 1.6731 39 1 4.9728 -3.3092 1.0167 40 1 5.0763 -3.5548 3.8284 41 1 5.5815 -4.5262 5.2954 42 1 6.4015 -5.8733 7.1795 43 1 8.5360 -7.0720 7.0111 44 1 10.2198 -7.7368 1.7361 45 1 9.0566 -5.5630 3.0108 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000173005105.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:00:24 Heat of formation + Delta-G solvation = -123.463705 kcal Electronic energy + Delta-G solvation = -25945.040989 eV Core-core repulsion = 22119.622908 eV Total energy + Delta-G solvation = -3825.418081 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.94100 -39.24472 -37.44826 -36.95375 -35.54218 -33.77417 -33.53217 -32.28754 -30.10080 -29.44055 -27.69308 -26.70013 -25.32723 -24.68454 -22.43354 -21.47840 -20.93820 -20.36968 -19.64657 -18.03122 -17.76385 -16.60685 -16.35321 -16.20457 -15.34033 -15.23281 -14.93481 -14.65084 -14.56356 -14.09878 -13.81145 -13.76681 -13.36112 -13.16981 -12.85627 -12.73477 -12.67564 -12.63713 -12.49678 -12.27582 -12.10395 -11.69556 -11.54110 -11.43308 -11.22152 -11.16109 -11.07438 -10.86093 -10.73745 -10.51179 -10.48655 -10.03035 -9.69441 -9.22570 -9.04868 -8.70666 -7.63946 -7.52606 -6.80090 -4.41820 1.99077 2.20108 2.29303 2.80426 3.08544 3.13300 3.14917 3.69848 3.86331 3.92623 4.27572 4.39940 4.50268 4.55346 4.61441 4.65870 4.75514 4.92420 5.12435 5.30508 5.35482 5.38702 5.44986 5.52321 5.59304 5.63153 5.66645 5.74869 5.75840 5.91580 6.00507 6.09656 6.24129 6.25526 6.71015 6.78447 6.98090 7.00563 7.20649 7.37323 7.53482 7.68789 7.74183 7.91462 8.06797 8.18192 8.50169 8.80039 8.82828 8.93455 10.14818 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.024913 B = 0.002341 C = 0.002193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1123.620397 B =11957.857611 C =12764.722139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.078 3.922 3 C -0.170 4.170 4 O -0.351 6.351 5 C 0.471 3.529 6 O -0.500 6.500 7 C -0.095 4.095 8 H 0.116 0.884 9 C -0.146 4.146 10 C 0.137 3.863 11 N -0.737 5.737 12 C 0.565 3.435 13 O -0.542 6.542 14 C -0.127 4.127 15 C -0.219 4.219 16 C -0.098 4.098 17 C -0.212 4.212 18 C 0.098 3.902 19 C -0.459 4.459 20 H 0.082 0.918 21 C 0.073 3.927 22 N -0.783 5.783 23 Si 0.910 3.090 24 H -0.260 1.260 25 H -0.274 1.274 26 H -0.270 1.270 27 C -0.092 4.092 28 H 0.068 0.932 29 H 0.077 0.923 30 H 0.065 0.935 31 H 0.085 0.915 32 H 0.066 0.934 33 H 0.062 0.938 34 H 0.074 0.926 35 H 0.064 0.936 36 H 0.072 0.928 37 H 0.077 0.923 38 H 0.074 0.926 39 H 0.075 0.925 40 H 0.399 0.601 41 H 0.089 0.911 42 H 0.093 0.907 43 H 0.096 0.904 44 H 0.284 0.716 45 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.474 13.280 -1.507 21.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.023 3.977 3 C -0.227 4.227 4 O -0.269 6.269 5 C 0.313 3.687 6 O -0.386 6.386 7 C -0.115 4.115 8 H 0.134 0.866 9 C -0.203 4.203 10 C 0.013 3.987 11 N -0.392 5.392 12 C 0.355 3.645 13 O -0.419 6.419 14 C -0.130 4.130 15 C -0.239 4.239 16 C -0.116 4.116 17 C -0.232 4.232 18 C 0.096 3.904 19 C -0.488 4.488 20 H 0.100 0.900 21 C -0.147 4.147 22 N -0.407 5.407 23 Si 0.734 3.266 24 H -0.183 1.183 25 H -0.199 1.199 26 H -0.195 1.195 27 C -0.112 4.112 28 H 0.087 0.913 29 H 0.096 0.904 30 H 0.084 0.916 31 H 0.104 0.896 32 H 0.085 0.915 33 H 0.081 0.919 34 H 0.093 0.907 35 H 0.083 0.917 36 H 0.091 0.909 37 H 0.095 0.905 38 H 0.092 0.908 39 H 0.093 0.907 40 H 0.235 0.765 41 H 0.107 0.893 42 H 0.111 0.889 43 H 0.114 0.886 44 H 0.095 0.905 45 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -15.844 13.312 -2.869 20.892 hybrid contribution 0.380 -0.268 0.039 0.466 sum -15.465 13.044 -2.830 20.428 Atomic orbital electron populations 1.21888 0.92324 1.03250 1.03164 1.22759 0.94993 0.92776 0.87131 1.22212 1.02297 0.95161 1.03073 1.86556 1.36514 1.62639 1.41151 1.23463 0.79170 0.76408 0.89674 1.90703 1.59120 1.58128 1.30666 1.21228 0.98412 0.98939 0.92898 0.86595 1.21812 1.03098 0.98662 0.96722 1.21005 0.92119 0.95317 0.90304 1.45892 1.23740 1.51475 1.18130 1.18837 0.79496 0.78265 0.87866 1.90718 1.57056 1.63065 1.31060 1.19443 0.98293 1.02087 0.93215 1.20322 1.00549 1.08193 0.94798 1.20432 0.96399 0.97960 0.96794 1.21102 0.96306 1.05892 0.99852 1.17613 0.92275 0.89849 0.90675 1.19619 1.03995 1.31918 0.93285 0.90019 1.25972 0.99821 0.93448 0.95423 1.69790 1.36336 1.33337 1.01266 0.86233 0.82174 0.78645 0.79558 1.18335 1.19918 1.19549 1.21643 0.94308 0.94762 1.00451 0.91335 0.90372 0.91623 0.89650 0.91485 0.91856 0.90693 0.91713 0.90946 0.90451 0.90814 0.90699 0.76525 0.89257 0.88882 0.88606 0.90454 0.84857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.88 9.57 37.16 0.36 -0.53 16 2 C 0.08 0.67 3.18 -26.73 -0.09 0.58 16 3 C -0.17 -1.26 9.55 37.16 0.35 -0.90 16 4 O -0.35 -3.58 9.78 -39.25 -0.38 -3.97 16 5 C 0.47 5.60 7.23 36.01 0.26 5.86 16 6 O -0.50 -7.48 15.14 -18.75 -0.28 -7.77 16 7 C -0.10 -1.00 2.87 -91.77 -0.26 -1.27 16 8 H 0.12 1.00 8.14 -51.93 -0.42 0.58 16 9 C -0.15 -1.27 9.00 37.16 0.33 -0.93 16 10 C 0.14 2.00 4.41 -4.04 -0.02 1.98 16 11 N -0.74 -11.90 5.23 -61.24 -0.32 -12.22 16 12 C 0.56 12.36 7.77 -12.31 -0.10 12.27 16 13 O -0.54 -13.86 16.33 5.32 0.09 -13.78 16 14 C -0.13 -2.98 5.87 -105.04 -0.62 -3.59 16 15 C -0.22 -4.47 9.55 -38.92 -0.37 -4.84 16 16 C -0.10 -2.04 10.01 -39.73 -0.40 -2.44 16 17 C -0.21 -4.97 9.78 -38.81 -0.38 -5.35 16 18 C 0.10 2.60 5.57 -106.87 -0.59 2.00 16 19 C -0.46 -12.05 9.05 -37.73 -0.34 -12.40 16 20 H 0.08 2.04 7.90 -52.49 -0.41 1.62 16 21 C 0.07 1.84 5.14 -17.35 -0.09 1.75 16 22 N -0.78 -20.87 10.97 55.55 0.61 -20.26 16 23 Si 0.91 18.86 29.59 -169.99 -5.03 13.83 16 24 H -0.26 -5.26 7.11 56.52 0.40 -4.86 16 25 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 26 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 27 C -0.09 -2.44 8.23 -38.44 -0.32 -2.76 16 28 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.09 0.83 7.16 -51.93 -0.37 0.46 16 32 H 0.07 0.44 8.14 -51.92 -0.42 0.02 16 33 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.07 0.53 8.11 -51.93 -0.42 0.10 16 37 H 0.08 0.64 7.18 -51.93 -0.37 0.27 16 38 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 39 H 0.07 1.23 7.95 -51.93 -0.41 0.81 16 40 H 0.40 5.30 5.67 -40.82 -0.23 5.07 16 41 H 0.09 1.47 6.38 -52.48 -0.33 1.13 16 42 H 0.09 1.63 8.06 -52.49 -0.42 1.21 16 43 H 0.10 2.09 8.06 -52.49 -0.42 1.67 16 44 H 0.28 6.96 8.30 -40.82 -0.34 6.62 16 45 H 0.13 3.87 5.77 -52.49 -0.30 3.56 16 LS Contribution 378.97 15.07 5.71 5.71 Total: -1.00 -31.68 378.97 -8.52 -40.20 By element: Atomic # 1 Polarization: 15.47 SS G_CDS: -6.65 Total: 8.82 kcal Atomic # 6 Polarization: -8.30 SS G_CDS: -2.26 Total: -10.57 kcal Atomic # 7 Polarization: -32.77 SS G_CDS: 0.29 Total: -32.48 kcal Atomic # 8 Polarization: -24.93 SS G_CDS: -0.58 Total: -25.51 kcal Atomic # 14 Polarization: 18.86 SS G_CDS: -5.03 Total: 13.83 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -31.68 -8.52 -40.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000173005105.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.261 kcal (2) G-P(sol) polarization free energy of solvation -31.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds