Wall clock time and date at job start Tue Mar 31 2020 13:00:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47481 * 2 1 4 4 O 1.45201 * 109.47018 * 119.99808 * 2 1 3 5 5 C 1.34228 * 117.00162 * 149.99784 * 4 2 1 6 6 O 1.20829 * 119.99959 * 0.02562 * 5 4 2 7 7 C 1.50700 * 120.00240 * 180.02562 * 5 4 2 8 8 H 1.09003 * 109.47057 * 60.00292 * 7 5 4 9 9 C 1.52997 * 109.46859 * 300.00232 * 7 5 4 10 10 C 1.53004 * 109.46941 * 180.02562 * 7 5 4 11 11 N 1.46506 * 109.46797 * 185.00007 * 10 7 5 12 12 C 1.34775 * 119.99973 * 179.97438 * 11 10 7 13 13 O 1.21547 * 119.99802 * 0.02562 * 12 11 10 14 14 C 1.47879 * 120.00037 * 179.97438 * 12 11 10 15 15 C 1.39920 * 120.02810 * 359.72699 * 14 12 11 16 16 C 1.38330 * 120.36187 * 180.25390 * 15 14 12 17 17 C 1.37748 * 120.41267 * 0.04683 * 16 15 14 18 18 C 1.40754 * 120.03727 * 359.94935 * 17 16 15 19 19 C 1.41439 * 120.17668 * 180.02562 * 18 17 16 20 20 H 1.08000 * 119.99985 * 334.93866 * 19 18 17 21 21 C 1.39935 * 120.00166 * 154.93750 * 19 18 17 22 22 N 1.30825 * 119.99735 * 342.57551 * 21 19 18 23 23 Si 1.86796 * 120.00048 * 162.57966 * 21 19 18 24 24 H 1.48491 * 109.47177 * 359.97438 * 23 21 19 25 25 H 1.48500 * 109.47184 * 120.00100 * 23 21 19 26 26 H 1.48498 * 109.47087 * 239.99714 * 23 21 19 27 27 C 1.38997 * 120.02584 * 180.02562 * 14 12 11 28 28 H 1.09003 * 109.47061 * 300.00194 * 1 2 3 29 29 H 1.09005 * 109.46459 * 60.00183 * 1 2 3 30 30 H 1.08994 * 109.46962 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47749 * 240.00095 * 2 1 3 32 32 H 1.09008 * 109.46942 * 59.99418 * 3 2 1 33 33 H 1.08997 * 109.47279 * 179.97438 * 3 2 1 34 34 H 1.08998 * 109.46959 * 300.00081 * 3 2 1 35 35 H 1.08998 * 109.47675 * 299.99570 * 9 7 5 36 36 H 1.08997 * 109.47523 * 60.00153 * 9 7 5 37 37 H 1.09006 * 109.46946 * 180.02562 * 9 7 5 38 38 H 1.08994 * 109.47349 * 65.00317 * 10 7 5 39 39 H 1.08998 * 109.47106 * 304.99525 * 10 7 5 40 40 H 0.96997 * 120.00148 * 359.97438 * 11 10 7 41 41 H 1.08004 * 119.81485 * 0.27417 * 15 14 12 42 42 H 1.08000 * 119.79344 * 179.97438 * 16 15 14 43 43 H 1.07993 * 119.98273 * 179.97438 * 17 16 15 44 44 H 0.96995 * 120.00017 * 179.97438 * 22 21 19 45 45 H 1.07997 * 120.20311 * 359.70752 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0140 -0.6844 1.1856 5 6 3.1936 -1.3170 1.0852 6 8 3.8019 -1.2990 0.0414 7 6 3.7593 -2.0497 2.2744 8 1 3.0661 -2.8325 2.5823 9 6 3.9640 -1.0667 3.4288 10 6 5.1023 -2.6772 1.8952 11 7 5.5951 -3.4878 3.0116 12 6 6.7693 -4.1405 2.9037 13 8 7.4196 -4.0561 1.8803 14 6 7.2670 -4.9582 4.0308 15 6 6.5221 -5.0502 5.2117 16 6 6.9837 -5.8090 6.2722 17 6 8.1820 -6.4819 6.1787 18 6 8.9451 -6.4014 4.9988 19 6 10.1757 -7.0916 4.8994 20 1 10.7321 -7.3348 5.7926 21 6 10.6723 -7.4593 3.6439 22 7 9.8756 -7.4822 2.6065 23 14 12.4727 -7.9177 3.4493 24 1 13.1552 -7.8121 4.7638 25 1 12.5772 -9.3114 2.9473 26 1 13.1169 -6.9936 2.4818 27 6 8.4782 -5.6312 3.9202 28 1 -0.3633 0.5139 0.8900 29 1 -0.3632 0.5138 -0.8901 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.6766 1.9564 0.8900 33 1 3.1300 1.4424 0.0005 34 1 1.6768 1.9563 -0.8900 35 1 4.6572 -0.2839 3.1210 36 1 3.0076 -0.6193 3.6991 37 1 4.3737 -1.5966 4.2889 38 1 5.8217 -1.8891 1.6731 39 1 4.9728 -3.3092 1.0167 40 1 5.0763 -3.5548 3.8284 41 1 5.5815 -4.5262 5.2954 42 1 6.4015 -5.8733 7.1795 43 1 8.5360 -7.0720 7.0111 44 1 10.2198 -7.7368 1.7361 45 1 9.0566 -5.5630 3.0108 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000173005105.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:00:23 Heat of formation + Delta-G solvation = -142.128895 kcal Electronic energy + Delta-G solvation = -25945.850372 eV Core-core repulsion = 22119.622908 eV Total energy + Delta-G solvation = -3826.227465 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.88375 -40.90075 -38.91012 -38.19426 -36.83472 -35.60087 -34.37409 -33.49306 -31.83493 -31.25760 -28.22088 -27.87963 -27.06996 -25.76462 -23.94052 -22.80896 -22.29159 -21.48355 -21.13087 -19.57750 -18.90875 -18.00222 -17.56612 -17.30340 -16.86204 -16.62033 -16.43540 -16.32105 -15.54745 -15.32412 -15.09952 -14.92194 -14.75514 -14.45440 -14.26587 -14.10612 -13.86942 -13.45256 -13.40911 -13.17570 -13.10708 -12.96063 -12.79928 -12.74894 -12.57346 -12.50240 -12.27000 -12.15815 -11.91370 -11.90664 -11.62477 -11.48785 -11.42147 -11.08456 -10.84438 -10.24257 -9.46556 -9.36939 -8.66364 -6.37756 0.37740 1.01418 1.06288 1.36011 1.40487 1.46579 1.52264 2.08676 2.19053 2.31641 2.78950 3.30938 3.67613 3.70447 3.75618 3.79743 3.93541 4.02247 4.09525 4.13960 4.44659 4.53210 4.61498 4.64452 4.66738 4.74466 4.78948 4.83722 4.86798 4.89456 4.94847 5.09764 5.11647 5.20595 5.21196 5.22323 5.31517 5.35138 5.45617 5.52835 5.87428 5.93306 6.06630 6.29889 6.49994 6.63086 6.67733 6.88697 6.95733 7.27864 8.30673 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.024913 B = 0.002341 C = 0.002193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1123.620397 B =11957.857611 C =12764.722139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.068 3.932 3 C -0.167 4.167 4 O -0.345 6.345 5 C 0.474 3.526 6 O -0.540 6.540 7 C -0.084 4.084 8 H 0.147 0.853 9 C -0.143 4.143 10 C 0.139 3.861 11 N -0.706 5.706 12 C 0.561 3.439 13 O -0.590 6.590 14 C -0.138 4.138 15 C -0.192 4.192 16 C -0.095 4.095 17 C -0.215 4.215 18 C 0.065 3.935 19 C -0.497 4.497 20 H 0.084 0.916 21 C 0.027 3.973 22 N -0.828 5.828 23 Si 0.982 3.018 24 H -0.250 1.250 25 H -0.264 1.264 26 H -0.272 1.272 27 C -0.132 4.132 28 H 0.077 0.923 29 H 0.097 0.903 30 H 0.063 0.937 31 H 0.068 0.932 32 H 0.078 0.922 33 H 0.040 0.960 34 H 0.093 0.907 35 H 0.054 0.946 36 H 0.094 0.906 37 H 0.088 0.912 38 H 0.057 0.943 39 H 0.053 0.947 40 H 0.418 0.582 41 H 0.143 0.857 42 H 0.142 0.858 43 H 0.109 0.891 44 H 0.285 0.715 45 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.427 14.430 0.869 24.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.013 3.987 3 C -0.224 4.224 4 O -0.262 6.262 5 C 0.317 3.683 6 O -0.429 6.429 7 C -0.103 4.103 8 H 0.164 0.836 9 C -0.200 4.200 10 C 0.014 3.986 11 N -0.361 5.361 12 C 0.351 3.649 13 O -0.472 6.472 14 C -0.141 4.141 15 C -0.212 4.212 16 C -0.113 4.113 17 C -0.234 4.234 18 C 0.063 3.937 19 C -0.526 4.526 20 H 0.102 0.898 21 C -0.187 4.187 22 N -0.453 5.453 23 Si 0.802 3.198 24 H -0.173 1.173 25 H -0.189 1.189 26 H -0.197 1.197 27 C -0.153 4.153 28 H 0.096 0.904 29 H 0.115 0.885 30 H 0.082 0.918 31 H 0.086 0.914 32 H 0.097 0.903 33 H 0.059 0.941 34 H 0.112 0.888 35 H 0.073 0.927 36 H 0.113 0.887 37 H 0.107 0.893 38 H 0.075 0.925 39 H 0.072 0.928 40 H 0.257 0.743 41 H 0.161 0.839 42 H 0.160 0.840 43 H 0.127 0.873 44 H 0.096 0.904 45 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -18.871 14.485 -0.435 23.793 hybrid contribution 1.049 -0.491 -0.636 1.322 sum -17.821 13.994 -1.071 22.684 Atomic orbital electron populations 1.21899 0.89907 1.03625 1.04570 1.23053 0.96796 0.92949 0.85869 1.22211 1.00864 0.94734 1.04628 1.86545 1.35428 1.62288 1.41915 1.23698 0.79259 0.75963 0.89361 1.90701 1.60265 1.59677 1.32280 1.21170 0.96201 0.99970 0.92969 0.83586 1.21851 1.04267 0.98028 0.95844 1.20980 0.94213 0.94269 0.89097 1.45543 1.21733 1.49646 1.19179 1.18787 0.80698 0.78542 0.86870 1.90697 1.58913 1.64829 1.32730 1.19719 0.97690 1.01750 0.94952 1.20896 1.01320 1.06246 0.92732 1.20956 0.95469 0.96294 0.98573 1.21433 0.97109 1.05918 0.98981 1.17956 0.93295 0.90509 0.91926 1.19883 1.05172 1.33623 0.93964 0.89760 1.26860 1.04075 0.92987 0.94785 1.69895 1.38327 1.35336 1.01778 0.85161 0.76479 0.78474 0.79642 1.17287 1.18883 1.19749 1.21442 0.96258 0.97708 0.99897 0.90392 0.88485 0.91773 0.91403 0.90283 0.94051 0.88822 0.92663 0.88670 0.89296 0.92506 0.92844 0.74283 0.83899 0.83989 0.87317 0.90421 0.88657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.34 9.57 71.98 0.69 -0.65 16 2 C 0.07 1.06 3.18 30.59 0.10 1.16 16 3 C -0.17 -2.24 9.55 71.98 0.69 -1.55 16 4 O -0.35 -6.40 9.78 -51.40 -0.50 -6.90 16 5 C 0.47 10.79 7.23 71.24 0.51 11.31 16 6 O -0.54 -16.54 15.14 21.95 0.33 -16.21 16 7 C -0.08 -1.57 2.87 -11.54 -0.03 -1.60 16 8 H 0.15 1.92 8.14 -2.39 -0.02 1.90 16 9 C -0.14 -1.99 9.00 71.98 0.65 -1.35 16 10 C 0.14 3.98 4.41 86.38 0.38 4.36 16 11 N -0.71 -21.56 5.23 -465.93 -2.44 -24.00 16 12 C 0.56 24.77 7.77 86.80 0.67 25.44 16 13 O -0.59 -31.84 16.33 -3.86 -0.06 -31.90 16 14 C -0.14 -6.44 5.87 -20.14 -0.12 -6.55 16 15 C -0.19 -7.15 9.55 22.70 0.22 -6.93 16 16 C -0.10 -3.59 10.01 22.18 0.22 -3.37 16 17 C -0.21 -9.84 9.78 22.77 0.22 -9.62 16 18 C 0.07 3.55 5.57 -21.32 -0.12 3.43 16 19 C -0.50 -27.24 9.05 23.47 0.21 -27.03 16 20 H 0.08 4.35 7.90 -2.91 -0.02 4.33 16 21 C 0.03 1.46 5.14 85.25 0.44 1.90 16 22 N -0.83 -47.06 10.97 21.82 0.24 -46.82 16 23 Si 0.98 40.34 29.59 68.60 2.03 42.37 16 24 H -0.25 -9.71 7.11 99.48 0.71 -9.00 16 25 H -0.26 -10.31 7.11 99.48 0.71 -9.61 16 26 H -0.27 -11.12 7.11 99.48 0.71 -10.42 16 27 C -0.13 -7.40 8.23 23.01 0.19 -7.21 16 28 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 29 H 0.10 0.56 8.14 -2.38 -0.02 0.54 16 30 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.07 1.31 7.16 -2.39 -0.02 1.30 16 32 H 0.08 0.86 8.14 -2.38 -0.02 0.84 16 33 H 0.04 0.73 8.14 -2.39 -0.02 0.71 16 34 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 35 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 36 H 0.09 0.96 8.11 -2.39 -0.02 0.94 16 37 H 0.09 1.06 7.18 -2.38 -0.02 1.04 16 38 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 39 H 0.05 1.80 7.95 -2.39 -0.02 1.78 16 40 H 0.42 9.30 5.67 -92.71 -0.53 8.78 16 41 H 0.14 3.74 6.38 -2.91 -0.02 3.72 16 42 H 0.14 4.05 8.06 -2.91 -0.02 4.03 16 43 H 0.11 4.59 8.06 -2.91 -0.02 4.57 16 44 H 0.29 14.98 8.30 -92.71 -0.77 14.21 16 45 H 0.10 6.00 5.77 -2.91 -0.02 5.98 16 Total: -1.00 -76.29 378.97 4.99 -71.29 By element: Atomic # 1 Polarization: 29.96 SS G_CDS: 0.47 Total: 30.43 kcal Atomic # 6 Polarization: -23.19 SS G_CDS: 4.92 Total: -18.26 kcal Atomic # 7 Polarization: -68.62 SS G_CDS: -2.20 Total: -70.82 kcal Atomic # 8 Polarization: -54.78 SS G_CDS: -0.23 Total: -55.01 kcal Atomic # 14 Polarization: 40.34 SS G_CDS: 2.03 Total: 42.37 kcal Total: -76.29 4.99 -71.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000173005105.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.835 kcal (2) G-P(sol) polarization free energy of solvation -76.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.294 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds