Wall clock time and date at job start Tue Mar 31 2020 13:07:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09006 * 109.47340 * 2 1 4 4 C 1.53002 * 109.47170 * 239.99836 * 2 1 3 5 5 O 1.42897 * 109.46982 * 305.00374 * 4 2 1 6 6 C 1.42902 * 114.00099 * 179.97438 * 5 4 2 7 7 H 1.09010 * 110.74706 * 32.01211 * 6 5 4 8 8 C 1.55293 * 110.85097 * 155.70912 * 6 5 4 9 9 C 1.54942 * 100.94653 * 152.32395 * 8 6 5 10 10 O 1.43655 * 105.13383 * 323.55770 * 9 8 6 11 11 C 1.43241 * 109.96919 * 24.42500 * 10 9 8 12 12 N 1.46497 * 109.47387 * 119.99714 * 2 1 3 13 13 C 1.34782 * 120.00392 * 275.00275 * 12 2 1 14 14 O 1.21550 * 119.99381 * 359.97438 * 13 12 2 15 15 C 1.47884 * 120.00144 * 179.97438 * 13 12 2 16 16 C 1.39916 * 120.02398 * 359.97438 * 15 13 12 17 17 C 1.38335 * 120.35933 * 180.02562 * 16 15 13 18 18 C 1.37753 * 120.40863 * 359.97438 * 17 16 15 19 19 C 1.40753 * 120.04180 * 0.02562 * 18 17 16 20 20 C 1.41438 * 120.17777 * 180.02562 * 19 18 17 21 21 H 1.07995 * 119.99688 * 24.36324 * 20 19 18 22 22 C 1.39936 * 119.99502 * 204.36267 * 20 19 18 23 23 N 1.30817 * 120.00539 * 17.73554 * 22 20 19 24 24 Si 1.86809 * 119.99476 * 197.73851 * 22 20 19 25 25 H 1.48498 * 109.46942 * 60.00100 * 24 22 20 26 26 H 1.48500 * 109.46796 * 179.97438 * 24 22 20 27 27 H 1.48497 * 109.46949 * 299.99936 * 24 22 20 28 28 C 1.38988 * 120.02510 * 179.72431 * 15 13 12 29 29 H 1.08999 * 109.47211 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47045 * 300.00314 * 1 2 3 31 31 H 1.09000 * 109.47226 * 59.99583 * 1 2 3 32 32 H 1.09003 * 109.46374 * 64.99853 * 4 2 1 33 33 H 1.08995 * 109.47497 * 184.99689 * 4 2 1 34 34 H 1.09008 * 111.13071 * 270.24313 * 8 6 5 35 35 H 1.09004 * 111.12601 * 34.40188 * 8 6 5 36 36 H 1.08997 * 110.31639 * 204.64078 * 9 8 6 37 37 H 1.09002 * 110.30934 * 82.47073 * 9 8 6 38 38 H 1.08995 * 109.82934 * 238.77372 * 11 10 9 39 39 H 1.08999 * 109.82838 * 117.80062 * 11 10 9 40 40 H 0.97000 * 119.99995 * 94.72174 * 12 2 1 41 41 H 1.08008 * 119.82511 * 0.02562 * 16 15 13 42 42 H 1.07996 * 119.79598 * 179.97438 * 17 16 15 43 43 H 1.07995 * 119.97995 * 179.97438 * 18 17 16 44 44 H 0.97005 * 120.00339 * 180.02562 * 23 22 20 45 45 H 1.08003 * 120.20417 * 359.97438 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 1.4701 -2.0303 -1.3094 6 6 1.8835 -2.7926 -2.4453 7 1 2.9013 -2.5318 -2.7357 8 6 1.7568 -4.3148 -2.1653 9 6 1.5298 -4.8596 -3.5979 10 8 0.7224 -3.8681 -4.2527 11 6 0.9076 -2.5939 -3.6249 12 7 2.0184 -0.6905 1.1962 13 6 2.1471 -0.0182 2.3572 14 8 1.8584 1.1613 2.4116 15 6 2.6396 -0.7154 3.5648 16 6 2.9715 -2.0732 3.5028 17 6 3.4324 -2.7324 4.6282 18 6 3.5703 -2.0601 5.8226 19 6 3.2413 -0.6940 5.9043 20 6 3.3823 -0.0006 7.1290 21 1 4.0783 -0.3568 7.8740 22 6 2.6200 1.1467 7.3751 23 7 1.5515 1.3881 6.6600 24 14 3.1282 2.3338 8.7251 25 1 4.4862 2.8605 8.4356 26 1 2.1627 3.4605 8.7827 27 1 3.1401 1.6242 10.0295 28 6 2.7780 -0.0212 4.7609 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 1.7516 -0.1583 -2.1369 33 1 3.1263 -0.7995 -1.2057 34 1 2.6756 -4.7130 -1.7346 35 1 0.9009 -4.5265 -1.5243 36 1 1.0026 -5.8128 -3.5612 37 1 2.4827 -4.9731 -4.1149 38 1 -0.0479 -2.2214 -3.2556 39 1 1.3301 -1.8876 -4.3394 40 1 2.2453 -1.6327 1.1536 41 1 2.8675 -2.6097 2.5711 42 1 3.6856 -3.7807 4.5702 43 1 3.9303 -2.5816 6.6971 44 1 1.0233 2.1837 6.8304 45 1 2.5271 1.0281 4.8123 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000177465712.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:07:21 Heat of formation + Delta-G solvation = -115.538346 kcal Electronic energy + Delta-G solvation = -26376.817298 eV Core-core repulsion = 22551.742886 eV Total energy + Delta-G solvation = -3825.074412 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.05706 -39.31745 -37.78091 -36.94026 -34.85075 -33.73759 -31.83328 -31.02696 -29.56966 -29.34716 -29.01852 -26.55835 -25.30447 -23.18317 -22.73277 -21.87258 -21.07172 -20.58197 -19.56196 -17.79260 -17.68418 -17.01280 -16.32659 -15.90127 -15.70403 -15.22293 -14.96926 -14.80731 -14.67352 -14.14398 -14.08458 -13.70595 -13.50470 -13.19835 -12.87174 -12.71633 -12.62181 -12.48670 -12.34284 -11.97495 -11.82155 -11.66943 -11.43899 -11.14836 -11.07946 -11.05010 -10.94621 -10.71935 -10.50174 -10.02319 -9.96468 -9.84762 -9.68687 -9.20593 -8.99862 -8.66018 -7.62238 -7.51460 -6.79489 -4.40966 2.22250 2.82710 3.07511 3.09245 3.11209 3.17003 3.59035 3.69746 3.88041 3.92487 4.05812 4.48591 4.54399 4.64193 4.69758 4.78329 4.90359 4.99445 5.12516 5.27460 5.32031 5.36715 5.45083 5.50859 5.56492 5.62141 5.66832 5.71625 5.89019 6.06422 6.16328 6.29335 6.43381 6.56507 6.72609 6.81738 6.93601 6.99856 7.03630 7.21967 7.38864 7.71384 7.77345 7.93652 8.12330 8.20819 8.51092 8.80675 8.84126 8.97439 10.15190 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.024713 B = 0.002579 C = 0.002386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1132.741203 B =10853.343900 C =11733.631286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.148 3.852 3 H 0.098 0.902 4 C 0.052 3.948 5 O -0.363 6.363 6 C 0.056 3.944 7 H 0.079 0.921 8 C -0.153 4.153 9 C 0.051 3.949 10 O -0.381 6.381 11 C 0.028 3.972 12 N -0.729 5.729 13 C 0.565 3.435 14 O -0.548 6.548 15 C -0.128 4.128 16 C -0.217 4.217 17 C -0.098 4.098 18 C -0.212 4.212 19 C 0.099 3.901 20 C -0.461 4.461 21 H 0.081 0.919 22 C 0.073 3.927 23 N -0.783 5.783 24 Si 0.910 3.090 25 H -0.263 1.263 26 H -0.277 1.277 27 H -0.265 1.265 28 C -0.093 4.093 29 H 0.064 0.936 30 H 0.063 0.937 31 H 0.057 0.943 32 H 0.063 0.937 33 H 0.059 0.941 34 H 0.091 0.909 35 H 0.092 0.908 36 H 0.090 0.910 37 H 0.063 0.937 38 H 0.082 0.918 39 H 0.069 0.931 40 H 0.402 0.598 41 H 0.090 0.910 42 H 0.092 0.908 43 H 0.095 0.905 44 H 0.285 0.715 45 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.554 -7.012 -17.381 18.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.043 3.957 3 H 0.116 0.884 4 C -0.025 4.025 5 O -0.281 6.281 6 C -0.003 4.003 7 H 0.097 0.903 8 C -0.191 4.191 9 C -0.025 4.025 10 O -0.301 6.301 11 C -0.049 4.049 12 N -0.383 5.383 13 C 0.355 3.645 14 O -0.426 6.426 15 C -0.131 4.131 16 C -0.237 4.237 17 C -0.116 4.116 18 C -0.232 4.232 19 C 0.096 3.904 20 C -0.490 4.490 21 H 0.099 0.901 22 C -0.146 4.146 23 N -0.407 5.407 24 Si 0.735 3.265 25 H -0.187 1.187 26 H -0.202 1.202 27 H -0.190 1.190 28 C -0.113 4.113 29 H 0.083 0.917 30 H 0.082 0.918 31 H 0.076 0.924 32 H 0.081 0.919 33 H 0.077 0.923 34 H 0.109 0.891 35 H 0.111 0.889 36 H 0.108 0.892 37 H 0.081 0.919 38 H 0.100 0.900 39 H 0.087 0.913 40 H 0.238 0.762 41 H 0.108 0.892 42 H 0.110 0.890 43 H 0.113 0.887 44 H 0.096 0.904 45 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -0.129 -6.081 -17.406 18.438 hybrid contribution 0.517 0.181 0.523 0.758 sum 0.388 -5.899 -16.883 17.888 Atomic orbital electron populations 1.22088 0.94912 1.02701 1.02075 1.20893 0.95044 0.96641 0.83124 0.88424 1.22974 0.97575 0.83785 0.98171 1.87993 1.69943 1.26490 1.43716 1.23660 0.97543 0.92313 0.86756 0.90338 1.23321 1.04592 0.93154 0.98029 1.23357 0.95496 0.92731 0.90935 1.88432 1.66996 1.17768 1.56860 1.23675 1.00551 0.86295 0.94394 1.45976 1.68926 1.14257 1.09158 1.18863 0.76205 0.86286 0.83118 1.90687 1.50657 1.16191 1.85068 1.19470 1.06070 0.94391 0.93166 1.20350 1.11813 0.93953 0.97562 1.20431 1.00230 0.97522 0.93451 1.21095 1.10972 0.94568 0.96592 1.17598 0.89407 0.90643 0.92749 1.19553 1.20312 1.07821 1.01273 0.90132 1.25962 0.93387 0.97955 0.97278 1.69780 1.10399 1.24863 1.35692 0.86329 0.79686 0.79577 0.80952 1.18735 1.20230 1.18967 1.21639 0.99627 1.00432 0.89587 0.91670 0.91829 0.92374 0.91863 0.92265 0.89071 0.88920 0.89188 0.91924 0.90031 0.91276 0.76162 0.89228 0.88960 0.88657 0.90385 0.84860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.14 9.29 37.16 0.35 -1.80 16 2 C 0.15 2.01 2.98 -67.93 -0.20 1.81 16 3 H 0.10 1.42 7.58 -51.93 -0.39 1.03 16 4 C 0.05 0.52 5.56 37.16 0.21 0.73 16 5 O -0.36 -3.81 8.93 -35.23 -0.31 -4.12 16 6 C 0.06 0.47 3.45 -24.79 -0.09 0.39 16 7 H 0.08 0.56 7.89 -51.92 -0.41 0.15 16 8 C -0.15 -1.18 6.89 -24.49 -0.17 -1.35 16 9 C 0.05 0.38 7.78 38.18 0.30 0.67 16 10 O -0.38 -3.87 11.36 -35.23 -0.40 -4.27 16 11 C 0.03 0.24 7.58 37.88 0.29 0.53 16 12 N -0.73 -12.06 5.01 -54.74 -0.27 -12.34 16 13 C 0.56 12.27 7.74 -12.31 -0.10 12.18 16 14 O -0.55 -13.54 16.00 5.32 0.09 -13.45 16 15 C -0.13 -3.02 5.87 -105.04 -0.62 -3.64 16 16 C -0.22 -4.57 9.55 -38.92 -0.37 -4.94 16 17 C -0.10 -2.09 10.01 -39.72 -0.40 -2.49 16 18 C -0.21 -5.05 9.78 -38.81 -0.38 -5.43 16 19 C 0.10 2.61 5.57 -106.87 -0.60 2.02 16 20 C -0.46 -12.12 9.05 -37.73 -0.34 -12.46 16 21 H 0.08 2.00 7.91 -52.49 -0.41 1.59 16 22 C 0.07 1.86 5.14 -17.35 -0.09 1.77 16 23 N -0.78 -20.82 10.96 55.55 0.61 -20.21 16 24 Si 0.91 18.80 29.60 -169.99 -5.03 13.77 16 25 H -0.26 -5.39 7.11 56.52 0.40 -4.98 16 26 H -0.28 -5.62 7.11 56.52 0.40 -5.22 16 27 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 28 C -0.09 -2.48 8.24 -38.44 -0.32 -2.79 16 29 H 0.06 0.88 7.56 -51.93 -0.39 0.49 16 30 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 33 H 0.06 0.56 8.11 -51.93 -0.42 0.14 16 34 H 0.09 0.59 8.14 -51.92 -0.42 0.17 16 35 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.08 0.76 8.05 -51.93 -0.42 0.34 16 39 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.40 6.08 6.40 -40.82 -0.26 5.82 16 41 H 0.09 1.58 6.38 -52.48 -0.33 1.25 16 42 H 0.09 1.67 8.06 -52.49 -0.42 1.25 16 43 H 0.10 2.11 8.06 -52.49 -0.42 1.68 16 44 H 0.28 6.98 8.30 -40.82 -0.34 6.64 16 45 H 0.13 3.85 5.75 -52.48 -0.30 3.55 16 LS Contribution 372.78 15.07 5.62 5.62 Total: -1.00 -30.46 372.78 -8.94 -39.40 By element: Atomic # 1 Polarization: 17.12 SS G_CDS: -6.71 Total: 10.41 kcal Atomic # 6 Polarization: -12.28 SS G_CDS: -2.52 Total: -14.81 kcal Atomic # 7 Polarization: -32.88 SS G_CDS: 0.33 Total: -32.54 kcal Atomic # 8 Polarization: -21.22 SS G_CDS: -0.63 Total: -21.85 kcal Atomic # 14 Polarization: 18.80 SS G_CDS: -5.03 Total: 13.77 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -30.46 -8.94 -39.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177465712.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.138 kcal (2) G-P(sol) polarization free energy of solvation -30.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds