Wall clock time and date at job start Tue Mar 31 2020 13:07:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09006 * 109.47340 * 2 1 4 4 C 1.53002 * 109.47170 * 239.99836 * 2 1 3 5 5 O 1.42897 * 109.46982 * 305.00374 * 4 2 1 6 6 C 1.42902 * 114.00099 * 179.97438 * 5 4 2 7 7 H 1.09010 * 110.74706 * 32.01211 * 6 5 4 8 8 C 1.55293 * 110.85097 * 155.70912 * 6 5 4 9 9 C 1.54942 * 100.94653 * 152.32395 * 8 6 5 10 10 O 1.43655 * 105.13383 * 323.55770 * 9 8 6 11 11 C 1.43241 * 109.96919 * 24.42500 * 10 9 8 12 12 N 1.46497 * 109.47387 * 119.99714 * 2 1 3 13 13 C 1.34782 * 120.00392 * 275.00275 * 12 2 1 14 14 O 1.21550 * 119.99381 * 359.97438 * 13 12 2 15 15 C 1.47884 * 120.00144 * 179.97438 * 13 12 2 16 16 C 1.39916 * 120.02398 * 359.97438 * 15 13 12 17 17 C 1.38335 * 120.35933 * 180.02562 * 16 15 13 18 18 C 1.37753 * 120.40863 * 359.97438 * 17 16 15 19 19 C 1.40753 * 120.04180 * 0.02562 * 18 17 16 20 20 C 1.41438 * 120.17777 * 180.02562 * 19 18 17 21 21 H 1.07995 * 119.99688 * 24.36324 * 20 19 18 22 22 C 1.39936 * 119.99502 * 204.36267 * 20 19 18 23 23 N 1.30817 * 120.00539 * 17.73554 * 22 20 19 24 24 Si 1.86809 * 119.99476 * 197.73851 * 22 20 19 25 25 H 1.48498 * 109.46942 * 60.00100 * 24 22 20 26 26 H 1.48500 * 109.46796 * 179.97438 * 24 22 20 27 27 H 1.48497 * 109.46949 * 299.99936 * 24 22 20 28 28 C 1.38988 * 120.02510 * 179.72431 * 15 13 12 29 29 H 1.08999 * 109.47211 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47045 * 300.00314 * 1 2 3 31 31 H 1.09000 * 109.47226 * 59.99583 * 1 2 3 32 32 H 1.09003 * 109.46374 * 64.99853 * 4 2 1 33 33 H 1.08995 * 109.47497 * 184.99689 * 4 2 1 34 34 H 1.09008 * 111.13071 * 270.24313 * 8 6 5 35 35 H 1.09004 * 111.12601 * 34.40188 * 8 6 5 36 36 H 1.08997 * 110.31639 * 204.64078 * 9 8 6 37 37 H 1.09002 * 110.30934 * 82.47073 * 9 8 6 38 38 H 1.08995 * 109.82934 * 238.77372 * 11 10 9 39 39 H 1.08999 * 109.82838 * 117.80062 * 11 10 9 40 40 H 0.97000 * 119.99995 * 94.72174 * 12 2 1 41 41 H 1.08008 * 119.82511 * 0.02562 * 16 15 13 42 42 H 1.07996 * 119.79598 * 179.97438 * 17 16 15 43 43 H 1.07995 * 119.97995 * 179.97438 * 18 17 16 44 44 H 0.97005 * 120.00339 * 180.02562 * 23 22 20 45 45 H 1.08003 * 120.20417 * 359.97438 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 1.4701 -2.0303 -1.3094 6 6 1.8835 -2.7926 -2.4453 7 1 2.9013 -2.5318 -2.7357 8 6 1.7568 -4.3148 -2.1653 9 6 1.5298 -4.8596 -3.5979 10 8 0.7224 -3.8681 -4.2527 11 6 0.9076 -2.5939 -3.6249 12 7 2.0184 -0.6905 1.1962 13 6 2.1471 -0.0182 2.3572 14 8 1.8584 1.1613 2.4116 15 6 2.6396 -0.7154 3.5648 16 6 2.9715 -2.0732 3.5028 17 6 3.4324 -2.7324 4.6282 18 6 3.5703 -2.0601 5.8226 19 6 3.2413 -0.6940 5.9043 20 6 3.3823 -0.0006 7.1290 21 1 4.0783 -0.3568 7.8740 22 6 2.6200 1.1467 7.3751 23 7 1.5515 1.3881 6.6600 24 14 3.1282 2.3338 8.7251 25 1 4.4862 2.8605 8.4356 26 1 2.1627 3.4605 8.7827 27 1 3.1401 1.6242 10.0295 28 6 2.7780 -0.0212 4.7609 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 1.7516 -0.1583 -2.1369 33 1 3.1263 -0.7995 -1.2057 34 1 2.6756 -4.7130 -1.7346 35 1 0.9009 -4.5265 -1.5243 36 1 1.0026 -5.8128 -3.5612 37 1 2.4827 -4.9731 -4.1149 38 1 -0.0479 -2.2214 -3.2556 39 1 1.3301 -1.8876 -4.3394 40 1 2.2453 -1.6327 1.1536 41 1 2.8675 -2.6097 2.5711 42 1 3.6856 -3.7807 4.5702 43 1 3.9303 -2.5816 6.6971 44 1 1.0233 2.1837 6.8304 45 1 2.5271 1.0281 4.8123 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000177465712.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:07:20 Heat of formation + Delta-G solvation = -135.242380 kcal Electronic energy + Delta-G solvation = -26377.671729 eV Core-core repulsion = 22551.742886 eV Total energy + Delta-G solvation = -3825.928843 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.09099 -40.54463 -39.03165 -38.37519 -36.15706 -35.58701 -32.99206 -32.13537 -31.32580 -30.93401 -29.69613 -27.49428 -27.18600 -24.68835 -23.47152 -22.83976 -22.49960 -21.89501 -21.19396 -19.54565 -18.45624 -18.00536 -17.58218 -17.23249 -16.85775 -16.49435 -16.42791 -15.88704 -15.83699 -15.51621 -15.34677 -15.05369 -14.87306 -14.44626 -14.25936 -14.18449 -13.84923 -13.49840 -13.39436 -13.27209 -12.96508 -12.85959 -12.79919 -12.53024 -12.42798 -12.32480 -12.20961 -11.99234 -11.89094 -11.66109 -11.50436 -11.06584 -10.78414 -10.61360 -10.49161 -10.13819 -9.46661 -9.38164 -8.66361 -6.38047 0.39286 1.01684 1.35988 1.47879 1.50566 2.10054 2.18927 2.24258 2.44999 2.79501 3.01248 3.45673 3.70460 3.73629 3.89082 4.00308 4.06313 4.08169 4.20124 4.30044 4.38497 4.43665 4.46089 4.55316 4.60963 4.71263 4.75264 4.79064 4.83552 4.88527 4.96707 4.99704 5.08510 5.09292 5.20017 5.29975 5.31958 5.51419 5.56303 5.87347 5.93346 5.97290 6.05717 6.15524 6.29172 6.52558 6.70893 6.87991 6.95102 7.34032 8.30224 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.024713 B = 0.002579 C = 0.002386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1132.741203 B =10853.343900 C =11733.631286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.141 3.859 3 H 0.087 0.913 4 C 0.061 3.939 5 O -0.378 6.378 6 C 0.055 3.945 7 H 0.098 0.902 8 C -0.152 4.152 9 C 0.048 3.952 10 O -0.406 6.406 11 C 0.026 3.974 12 N -0.706 5.706 13 C 0.561 3.439 14 O -0.588 6.588 15 C -0.139 4.139 16 C -0.197 4.197 17 C -0.095 4.095 18 C -0.218 4.218 19 C 0.067 3.933 20 C -0.498 4.498 21 H 0.084 0.916 22 C 0.029 3.971 23 N -0.826 5.826 24 Si 0.983 3.017 25 H -0.260 1.260 26 H -0.273 1.273 27 H -0.252 1.252 28 C -0.132 4.132 29 H 0.065 0.935 30 H 0.027 0.973 31 H 0.085 0.915 32 H 0.090 0.910 33 H 0.072 0.928 34 H 0.106 0.894 35 H 0.079 0.921 36 H 0.097 0.903 37 H 0.079 0.921 38 H 0.070 0.930 39 H 0.083 0.917 40 H 0.412 0.588 41 H 0.134 0.866 42 H 0.138 0.862 43 H 0.108 0.892 44 H 0.286 0.714 45 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.670 -9.005 -19.179 21.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.037 3.963 3 H 0.105 0.895 4 C -0.015 4.015 5 O -0.298 6.298 6 C -0.003 4.003 7 H 0.116 0.884 8 C -0.190 4.190 9 C -0.028 4.028 10 O -0.326 6.326 11 C -0.051 4.051 12 N -0.359 5.359 13 C 0.351 3.649 14 O -0.470 6.470 15 C -0.142 4.142 16 C -0.216 4.216 17 C -0.113 4.113 18 C -0.238 4.238 19 C 0.064 3.936 20 C -0.527 4.527 21 H 0.102 0.898 22 C -0.186 4.186 23 N -0.451 5.451 24 Si 0.803 3.197 25 H -0.184 1.184 26 H -0.197 1.197 27 H -0.176 1.176 28 C -0.152 4.152 29 H 0.084 0.916 30 H 0.046 0.954 31 H 0.104 0.896 32 H 0.108 0.892 33 H 0.090 0.910 34 H 0.124 0.876 35 H 0.097 0.903 36 H 0.116 0.884 37 H 0.097 0.903 38 H 0.089 0.911 39 H 0.101 0.899 40 H 0.250 0.750 41 H 0.151 0.849 42 H 0.156 0.844 43 H 0.126 0.874 44 H 0.097 0.903 45 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 0.992 -8.131 -19.245 20.916 hybrid contribution 0.153 0.610 0.887 1.087 sum 1.145 -7.521 -18.359 19.873 Atomic orbital electron populations 1.22019 0.94789 1.02570 1.01715 1.21139 0.95137 0.96655 0.83381 0.89487 1.22870 0.98035 0.83875 0.96748 1.87964 1.70392 1.26631 1.44782 1.23795 0.98299 0.92329 0.85884 0.88397 1.23330 1.04760 0.92840 0.98024 1.23523 0.96059 0.92462 0.90732 1.88403 1.67908 1.18699 1.57620 1.23716 1.00296 0.86149 0.94907 1.45813 1.67108 1.14477 1.08503 1.18726 0.76239 0.85845 0.84111 1.90664 1.52574 1.17935 1.85793 1.19805 1.05586 0.95761 0.93091 1.20831 1.08760 0.92672 0.99368 1.20917 0.98632 0.99564 0.92223 1.21406 1.10269 0.93707 0.98382 1.17955 0.90463 0.92205 0.92944 1.19841 1.21493 1.09534 1.01859 0.89759 1.26865 0.92832 0.99279 0.99615 1.69887 1.11776 1.25584 1.37862 0.85242 0.79144 0.77176 0.78129 1.18440 1.19716 1.17596 1.21449 1.02864 0.99434 0.91470 0.91570 0.95363 0.89578 0.89155 0.90999 0.87553 0.90261 0.88443 0.90319 0.91125 0.89908 0.74974 0.84864 0.84394 0.87356 0.90320 0.88325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.96 9.29 71.98 0.67 -3.29 16 2 C 0.14 3.62 2.98 44.99 0.13 3.75 16 3 H 0.09 2.48 7.58 -2.38 -0.02 2.46 16 4 C 0.06 1.03 5.56 71.98 0.40 1.43 16 5 O -0.38 -6.72 8.93 -148.98 -1.33 -8.05 16 6 C 0.06 0.74 3.45 31.85 0.11 0.85 16 7 H 0.10 0.97 7.89 -2.38 -0.02 0.95 16 8 C -0.15 -1.89 6.89 32.05 0.22 -1.67 16 9 C 0.05 0.58 7.78 72.65 0.56 1.15 16 10 O -0.41 -7.45 11.36 -148.98 -1.69 -9.14 16 11 C 0.03 0.39 7.58 72.45 0.55 0.94 16 12 N -0.71 -22.35 5.01 -445.36 -2.23 -24.58 16 13 C 0.56 24.69 7.74 86.80 0.67 25.36 16 14 O -0.59 -30.42 16.00 -3.87 -0.06 -30.48 16 15 C -0.14 -6.64 5.87 -20.14 -0.12 -6.76 16 16 C -0.20 -7.78 9.55 22.70 0.22 -7.56 16 17 C -0.10 -3.79 10.01 22.18 0.22 -3.57 16 18 C -0.22 -10.23 9.78 22.77 0.22 -10.01 16 19 C 0.07 3.65 5.57 -21.32 -0.12 3.53 16 20 C -0.50 -27.31 9.05 23.47 0.21 -27.10 16 21 H 0.08 4.34 7.91 -2.91 -0.02 4.32 16 22 C 0.03 1.53 5.14 85.26 0.44 1.97 16 23 N -0.83 -46.59 10.96 21.82 0.24 -46.35 16 24 Si 0.98 39.89 29.60 68.60 2.03 41.92 16 25 H -0.26 -10.31 7.11 99.48 0.71 -9.60 16 26 H -0.27 -10.69 7.11 99.48 0.71 -9.98 16 27 H -0.25 -9.60 7.11 99.48 0.71 -8.90 16 28 C -0.13 -7.38 8.24 23.01 0.19 -7.19 16 29 H 0.07 1.69 7.56 -2.39 -0.02 1.68 16 30 H 0.03 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 32 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.07 1.06 8.11 -2.39 -0.02 1.04 16 34 H 0.11 0.99 8.14 -2.38 -0.02 0.97 16 35 H 0.08 1.20 8.14 -2.38 -0.02 1.18 16 36 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 37 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 38 H 0.07 1.19 8.05 -2.39 -0.02 1.17 16 39 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 40 H 0.41 11.21 6.40 -92.71 -0.59 10.62 16 41 H 0.13 4.06 6.38 -2.91 -0.02 4.04 16 42 H 0.14 4.25 8.06 -2.91 -0.02 4.23 16 43 H 0.11 4.69 8.06 -2.91 -0.02 4.66 16 44 H 0.29 14.93 8.30 -92.70 -0.77 14.16 16 45 H 0.10 6.16 5.75 -2.91 -0.02 6.14 16 Total: -1.00 -71.35 372.78 1.94 -69.41 By element: Atomic # 1 Polarization: 35.04 SS G_CDS: 0.40 Total: 35.45 kcal Atomic # 6 Polarization: -32.75 SS G_CDS: 4.58 Total: -28.17 kcal Atomic # 7 Polarization: -68.94 SS G_CDS: -1.99 Total: -70.93 kcal Atomic # 8 Polarization: -44.58 SS G_CDS: -3.08 Total: -47.67 kcal Atomic # 14 Polarization: 39.89 SS G_CDS: 2.03 Total: 41.92 kcal Total: -71.35 1.94 -69.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177465712.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.837 kcal (2) G-P(sol) polarization free energy of solvation -71.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds