Wall clock time and date at job start Tue Mar 31 2020 12:36:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35897 * 116.99701 * 2 1 4 4 C 1.38754 * 120.05735 * 0.02562 * 3 2 1 5 5 C 1.38127 * 119.94064 * 179.97438 * 4 3 2 6 6 C 1.38288 * 120.05654 * 359.74876 * 5 4 3 7 7 C 1.38247 * 120.11046 * 0.50843 * 6 5 4 8 8 C 1.50703 * 119.97000 * 179.76585 * 7 6 5 9 9 H 1.09005 * 109.46922 * 179.72947 * 8 7 6 10 10 C 1.52997 * 109.47097 * 59.72421 * 8 7 6 11 11 C 1.53003 * 109.47161 * 299.72543 * 8 7 6 12 12 C 1.50696 * 109.46849 * 185.00084 * 11 8 7 13 13 O 1.21281 * 120.00228 * 0.02562 * 12 11 8 14 14 N 1.34785 * 119.99792 * 179.97438 * 12 11 8 15 15 C 1.47576 * 134.49390 * 179.97438 * 14 12 11 16 16 C 1.53946 * 86.11846 * 155.36116 * 15 14 12 17 17 O 1.42894 * 113.74258 * 269.15648 * 16 15 14 18 18 C 1.50696 * 113.73834 * 137.95019 * 16 15 14 19 19 H 1.07999 * 120.00319 * 1.93267 * 18 16 15 20 20 C 1.37885 * 119.99717 * 181.92651 * 18 16 15 21 21 N 1.31516 * 119.99913 * 180.02562 * 20 18 16 22 22 Si 1.86798 * 119.99766 * 0.02562 * 20 18 16 23 23 H 1.48500 * 109.47353 * 269.99586 * 22 20 18 24 24 H 1.48501 * 109.47293 * 30.00037 * 22 20 18 25 25 H 1.48504 * 109.46680 * 149.99835 * 22 20 18 26 26 C 1.47805 * 134.45494 * 359.87006 * 14 12 11 27 27 C 1.38160 * 120.05752 * 359.49578 * 7 6 5 28 28 H 1.09002 * 109.47175 * 60.00620 * 1 2 3 29 29 H 1.09004 * 109.47154 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47504 * 300.00608 * 1 2 3 31 31 H 1.07997 * 120.02970 * 0.02562 * 4 3 2 32 32 H 1.08003 * 119.97078 * 180.02562 * 5 4 3 33 33 H 1.08003 * 119.94706 * 180.27664 * 6 5 4 34 34 H 1.09003 * 109.47326 * 179.97438 * 10 8 7 35 35 H 1.08992 * 109.47377 * 300.00256 * 10 8 7 36 36 H 1.09002 * 109.46807 * 60.00338 * 10 8 7 37 37 H 1.08997 * 109.47266 * 65.00110 * 11 8 7 38 38 H 1.08996 * 109.47071 * 305.00091 * 11 8 7 39 39 H 1.08999 * 113.76805 * 41.06190 * 15 14 12 40 40 H 1.09001 * 113.77518 * 269.66882 * 15 14 12 41 41 H 0.96701 * 113.99575 * 178.07128 * 17 16 15 42 42 H 0.97001 * 119.99646 * 179.97438 * 21 20 18 43 43 H 1.09008 * 113.77106 * 90.37414 * 26 14 12 44 44 H 1.08997 * 113.84172 * 318.91386 * 26 14 12 45 45 H 1.08001 * 120.03256 * 180.28016 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2913 2.3753 0.0005 5 6 1.9208 3.6048 0.0011 6 6 3.3019 3.6758 0.0063 7 6 4.0559 2.5171 0.0004 8 6 5.5608 2.5982 0.0008 9 1 5.9789 1.5915 0.0006 10 6 6.0309 3.3454 1.2504 11 6 6.0316 3.3462 -1.2481 12 6 7.5370 3.3208 -1.3111 13 8 8.1709 2.7593 -0.4429 14 7 8.1789 3.9212 -2.3329 15 6 9.5964 4.0912 -2.7069 16 6 9.0880 4.2478 -4.1515 17 8 9.0239 3.0175 -4.8755 18 6 9.7746 5.3470 -4.9204 19 1 10.5670 5.9163 -4.4574 20 6 9.3912 5.6258 -6.2152 21 7 9.9908 6.5847 -6.8865 22 14 8.0203 4.6414 -7.0159 23 1 8.5971 3.4591 -7.7049 24 1 7.0625 4.1894 -5.9750 25 1 7.3115 5.4934 -8.0043 26 6 7.7449 4.6722 -3.5297 27 6 3.4311 1.2848 -0.0002 28 1 -0.3634 0.5137 -0.8901 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 0.2127 2.3204 0.0014 32 1 1.3340 4.5114 0.0019 33 1 3.7923 4.6380 0.0112 34 1 7.1194 3.4037 1.2509 35 1 5.6128 4.3520 1.2506 36 1 5.6955 2.8125 2.1401 37 1 5.6872 4.3794 -1.2042 38 1 5.6225 2.8642 -2.1360 39 1 10.2024 3.1991 -2.5488 40 1 10.0526 4.9942 -2.3013 41 1 8.6772 3.1074 -5.7737 42 1 9.7213 6.7806 -7.7975 43 1 7.6563 5.7463 -3.3662 44 1 6.8752 4.2434 -4.0275 45 1 4.0206 0.3799 -0.0002 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000186821034.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:36:57 Heat of formation + Delta-G solvation = -54.441827 kcal Electronic energy + Delta-G solvation = -26587.108052 eV Core-core repulsion = 22764.682984 eV Total energy + Delta-G solvation = -3822.425068 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.47884 -39.80312 -38.42967 -37.50257 -34.70065 -34.35756 -32.56491 -31.05196 -29.90098 -29.09031 -27.58609 -27.39285 -25.56836 -25.12322 -23.26693 -22.77554 -20.61965 -19.92036 -18.48786 -17.85378 -17.44572 -16.63102 -16.44414 -16.31630 -16.14792 -15.99812 -15.36556 -15.13845 -14.48727 -14.17073 -13.78775 -13.74072 -13.58105 -13.31758 -13.17955 -13.01260 -12.61702 -12.60658 -12.37223 -12.27630 -12.14259 -11.81356 -11.47564 -11.39522 -11.22870 -11.03814 -10.93869 -10.86088 -10.72014 -10.61935 -10.14883 -9.68975 -9.29066 -9.02642 -8.95936 -8.67913 -8.37363 -8.02285 -6.43878 -4.50101 1.14044 1.28140 2.97684 2.99463 3.00161 3.09060 3.12941 3.38393 3.60836 4.01392 4.49994 4.56536 4.65132 4.77643 4.81427 4.81871 4.88977 5.03572 5.09554 5.13372 5.15363 5.19962 5.29213 5.42534 5.53716 5.59274 5.68812 5.78028 5.87176 6.00906 6.02010 6.07246 6.10230 6.16140 6.25109 6.26093 6.34305 6.44248 6.46579 6.51156 6.60401 6.63912 7.17436 7.18919 8.01574 8.30409 8.50091 8.60053 8.63946 9.13636 10.68291 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.016697 B = 0.002953 C = 0.002719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1676.541713 B = 9479.618817 C =10295.171065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.319 6.319 3 C 0.126 3.874 4 C -0.215 4.215 5 C -0.079 4.079 6 C -0.150 4.150 7 C -0.032 4.032 8 C -0.036 4.036 9 H 0.088 0.912 10 C -0.147 4.147 11 C -0.127 4.127 12 C 0.531 3.469 13 O -0.557 6.557 14 N -0.635 5.635 15 C 0.127 3.873 16 C 0.194 3.806 17 O -0.553 6.553 18 C -0.536 4.536 19 H 0.091 0.909 20 C 0.080 3.920 21 N -0.876 5.876 22 Si 0.857 3.143 23 H -0.267 1.267 24 H -0.255 1.255 25 H -0.283 1.283 26 C 0.062 3.938 27 C -0.147 4.147 28 H 0.055 0.945 29 H 0.098 0.902 30 H 0.054 0.946 31 H 0.125 0.875 32 H 0.124 0.876 33 H 0.125 0.875 34 H 0.082 0.918 35 H 0.050 0.950 36 H 0.052 0.948 37 H 0.091 0.909 38 H 0.090 0.910 39 H 0.075 0.925 40 H 0.094 0.906 41 H 0.352 0.648 42 H 0.271 0.729 43 H 0.095 0.905 44 H 0.069 0.931 45 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.862 -6.315 11.823 23.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.232 6.232 3 C 0.081 3.919 4 C -0.234 4.234 5 C -0.097 4.097 6 C -0.168 4.168 7 C -0.032 4.032 8 C -0.054 4.054 9 H 0.106 0.894 10 C -0.204 4.204 11 C -0.167 4.167 12 C 0.321 3.679 13 O -0.437 6.437 14 N -0.369 5.369 15 C 0.005 3.995 16 C 0.153 3.847 17 O -0.364 6.364 18 C -0.574 4.574 19 H 0.109 0.891 20 C -0.126 4.126 21 N -0.512 5.512 22 Si 0.685 3.315 23 H -0.193 1.193 24 H -0.180 1.180 25 H -0.209 1.209 26 C -0.061 4.061 27 C -0.166 4.166 28 H 0.073 0.927 29 H 0.117 0.883 30 H 0.073 0.927 31 H 0.143 0.857 32 H 0.142 0.858 33 H 0.142 0.858 34 H 0.101 0.899 35 H 0.069 0.931 36 H 0.071 0.929 37 H 0.109 0.891 38 H 0.108 0.892 39 H 0.093 0.907 40 H 0.112 0.888 41 H 0.204 0.796 42 H 0.081 0.919 43 H 0.113 0.887 44 H 0.087 0.913 45 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -18.297 -7.013 12.806 23.408 hybrid contribution -1.428 0.055 -1.238 1.891 sum -19.725 -6.958 11.568 23.902 Atomic orbital electron populations 1.23037 0.78530 1.03842 1.01283 1.86075 1.21269 1.27077 1.88806 1.19000 0.92259 0.84093 0.96556 1.21188 0.99815 0.92476 1.09941 1.20914 0.94569 0.96905 0.97331 1.20961 0.93570 0.98304 1.03998 1.19738 0.95495 0.92140 0.95839 1.19905 0.89268 1.01379 0.94883 0.89371 1.21948 1.03549 0.99084 0.95821 1.21649 0.92883 1.02644 0.99523 1.20136 0.89579 0.78471 0.79725 1.90612 1.68869 1.46003 1.38211 1.50194 1.10133 1.52993 1.23553 1.23259 0.82959 1.01229 0.92017 1.20566 0.90806 0.83464 0.89831 1.86470 1.87659 1.33569 1.28704 1.21236 1.21299 1.16255 0.98605 0.89103 1.25012 0.95909 0.94690 0.96940 1.69859 1.40599 1.29330 1.11398 0.87359 0.83046 0.80532 0.80518 1.19320 1.18048 1.20950 1.24674 1.01451 0.96766 0.83168 1.20361 0.91236 0.98342 1.06662 0.92679 0.88319 0.92744 0.85741 0.85827 0.85750 0.89937 0.93099 0.92885 0.89059 0.89160 0.90662 0.88841 0.79634 0.91897 0.88716 0.91289 0.85162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 9.81 101.05 0.99 1.18 16 2 O -0.32 -3.45 10.50 -19.42 -0.20 -3.65 16 3 C 0.13 1.44 6.69 -39.21 -0.26 1.18 16 4 C -0.22 -2.13 9.04 -39.43 -0.36 -2.48 16 5 C -0.08 -0.77 10.04 -39.60 -0.40 -1.17 16 6 C -0.15 -1.62 8.76 -39.56 -0.35 -1.97 16 7 C -0.03 -0.38 4.78 -104.65 -0.50 -0.88 16 8 C -0.04 -0.47 2.21 -91.77 -0.20 -0.67 16 9 H 0.09 1.25 7.69 -51.93 -0.40 0.85 16 10 C -0.15 -1.87 8.74 37.16 0.32 -1.54 16 11 C -0.13 -1.81 4.67 -27.88 -0.13 -1.94 16 12 C 0.53 9.75 7.77 -10.98 -0.09 9.66 16 13 O -0.56 -11.50 14.69 5.56 0.08 -11.42 16 14 N -0.63 -12.36 3.61 -178.10 -0.64 -13.00 16 15 C 0.13 2.61 8.23 -2.97 -0.02 2.59 16 16 C 0.19 4.34 1.06 -90.84 -0.10 4.25 16 17 O -0.55 -12.87 13.35 -35.23 -0.47 -13.34 16 18 C -0.54 -13.62 9.19 -34.44 -0.32 -13.94 16 19 H 0.09 2.48 8.06 -52.49 -0.42 2.05 16 20 C 0.08 2.06 5.47 -17.82 -0.10 1.97 16 21 N -0.88 -24.25 13.96 55.43 0.77 -23.47 16 22 Si 0.86 18.54 24.31 -169.99 -4.13 14.40 16 23 H -0.27 -5.67 7.05 56.52 0.40 -5.27 16 24 H -0.26 -5.11 5.16 56.52 0.29 -4.82 16 25 H -0.28 -6.15 7.11 56.52 0.40 -5.74 16 26 C 0.06 1.21 7.10 -2.83 -0.02 1.19 16 27 C -0.15 -1.80 9.61 -39.43 -0.38 -2.18 16 28 H 0.05 0.31 7.66 -51.93 -0.40 -0.08 16 29 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.05 0.30 7.66 -51.93 -0.40 -0.10 16 31 H 0.12 0.94 6.30 -52.49 -0.33 0.60 16 32 H 0.12 0.91 8.06 -52.48 -0.42 0.49 16 33 H 0.12 1.20 7.15 -52.48 -0.38 0.82 16 34 H 0.08 1.25 5.95 -51.93 -0.31 0.94 16 35 H 0.05 0.58 7.37 -51.93 -0.38 0.19 16 36 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.09 1.15 7.58 -51.93 -0.39 0.76 16 38 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 39 H 0.07 1.56 8.14 -51.93 -0.42 1.14 16 40 H 0.09 1.79 8.09 -51.93 -0.42 1.37 16 41 H 0.35 7.78 3.57 45.56 0.16 7.94 16 42 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 43 H 0.09 1.74 8.09 -51.92 -0.42 1.32 16 44 H 0.07 1.28 6.83 -51.93 -0.35 0.92 16 45 H 0.13 1.53 7.94 -52.49 -0.42 1.11 16 LS Contribution 361.80 15.07 5.45 5.45 Total: -1.00 -30.32 361.80 -7.26 -37.58 By element: Atomic # 1 Polarization: 18.43 SS G_CDS: -6.22 Total: 12.21 kcal Atomic # 6 Polarization: -2.86 SS G_CDS: -1.90 Total: -4.75 kcal Atomic # 7 Polarization: -36.60 SS G_CDS: 0.13 Total: -36.47 kcal Atomic # 8 Polarization: -27.83 SS G_CDS: -0.59 Total: -28.42 kcal Atomic # 14 Polarization: 18.54 SS G_CDS: -4.13 Total: 14.40 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -30.32 -7.26 -37.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186821034.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.858 kcal (2) G-P(sol) polarization free energy of solvation -30.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds