Wall clock time and date at job start Tue Mar 31 2020 12:36:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35897 * 116.99701 * 2 1 4 4 C 1.38754 * 120.05735 * 0.02562 * 3 2 1 5 5 C 1.38127 * 119.94064 * 179.97438 * 4 3 2 6 6 C 1.38288 * 120.05654 * 359.74876 * 5 4 3 7 7 C 1.38247 * 120.11046 * 0.50843 * 6 5 4 8 8 C 1.50703 * 119.97000 * 179.76585 * 7 6 5 9 9 H 1.09005 * 109.46922 * 179.72947 * 8 7 6 10 10 C 1.52997 * 109.47097 * 59.72421 * 8 7 6 11 11 C 1.53003 * 109.47161 * 299.72543 * 8 7 6 12 12 C 1.50696 * 109.46849 * 185.00084 * 11 8 7 13 13 O 1.21281 * 120.00228 * 0.02562 * 12 11 8 14 14 N 1.34785 * 119.99792 * 179.97438 * 12 11 8 15 15 C 1.47576 * 134.49390 * 179.97438 * 14 12 11 16 16 C 1.53946 * 86.11846 * 155.36116 * 15 14 12 17 17 O 1.42894 * 113.74258 * 269.15648 * 16 15 14 18 18 C 1.50696 * 113.73834 * 137.95019 * 16 15 14 19 19 H 1.07999 * 120.00319 * 1.93267 * 18 16 15 20 20 C 1.37885 * 119.99717 * 181.92651 * 18 16 15 21 21 N 1.31516 * 119.99913 * 180.02562 * 20 18 16 22 22 Si 1.86798 * 119.99766 * 0.02562 * 20 18 16 23 23 H 1.48500 * 109.47353 * 269.99586 * 22 20 18 24 24 H 1.48501 * 109.47293 * 30.00037 * 22 20 18 25 25 H 1.48504 * 109.46680 * 149.99835 * 22 20 18 26 26 C 1.47805 * 134.45494 * 359.87006 * 14 12 11 27 27 C 1.38160 * 120.05752 * 359.49578 * 7 6 5 28 28 H 1.09002 * 109.47175 * 60.00620 * 1 2 3 29 29 H 1.09004 * 109.47154 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47504 * 300.00608 * 1 2 3 31 31 H 1.07997 * 120.02970 * 0.02562 * 4 3 2 32 32 H 1.08003 * 119.97078 * 180.02562 * 5 4 3 33 33 H 1.08003 * 119.94706 * 180.27664 * 6 5 4 34 34 H 1.09003 * 109.47326 * 179.97438 * 10 8 7 35 35 H 1.08992 * 109.47377 * 300.00256 * 10 8 7 36 36 H 1.09002 * 109.46807 * 60.00338 * 10 8 7 37 37 H 1.08997 * 109.47266 * 65.00110 * 11 8 7 38 38 H 1.08996 * 109.47071 * 305.00091 * 11 8 7 39 39 H 1.08999 * 113.76805 * 41.06190 * 15 14 12 40 40 H 1.09001 * 113.77518 * 269.66882 * 15 14 12 41 41 H 0.96701 * 113.99575 * 178.07128 * 17 16 15 42 42 H 0.97001 * 119.99646 * 179.97438 * 21 20 18 43 43 H 1.09008 * 113.77106 * 90.37414 * 26 14 12 44 44 H 1.08997 * 113.84172 * 318.91386 * 26 14 12 45 45 H 1.08001 * 120.03256 * 180.28016 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2913 2.3753 0.0005 5 6 1.9208 3.6048 0.0011 6 6 3.3019 3.6758 0.0063 7 6 4.0559 2.5171 0.0004 8 6 5.5608 2.5982 0.0008 9 1 5.9789 1.5915 0.0006 10 6 6.0309 3.3454 1.2504 11 6 6.0316 3.3462 -1.2481 12 6 7.5370 3.3208 -1.3111 13 8 8.1709 2.7593 -0.4429 14 7 8.1789 3.9212 -2.3329 15 6 9.5964 4.0912 -2.7069 16 6 9.0880 4.2478 -4.1515 17 8 9.0239 3.0175 -4.8755 18 6 9.7746 5.3470 -4.9204 19 1 10.5670 5.9163 -4.4574 20 6 9.3912 5.6258 -6.2152 21 7 9.9908 6.5847 -6.8865 22 14 8.0203 4.6414 -7.0159 23 1 8.5971 3.4591 -7.7049 24 1 7.0625 4.1894 -5.9750 25 1 7.3115 5.4934 -8.0043 26 6 7.7449 4.6722 -3.5297 27 6 3.4311 1.2848 -0.0002 28 1 -0.3634 0.5137 -0.8901 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 0.2127 2.3204 0.0014 32 1 1.3340 4.5114 0.0019 33 1 3.7923 4.6380 0.0112 34 1 7.1194 3.4037 1.2509 35 1 5.6128 4.3520 1.2506 36 1 5.6955 2.8125 2.1401 37 1 5.6872 4.3794 -1.2042 38 1 5.6225 2.8642 -2.1360 39 1 10.2024 3.1991 -2.5488 40 1 10.0526 4.9942 -2.3013 41 1 8.6772 3.1074 -5.7737 42 1 9.7213 6.7806 -7.7975 43 1 7.6563 5.7463 -3.3662 44 1 6.8752 4.2434 -4.0275 45 1 4.0206 0.3799 -0.0002 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000186821034.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:36:56 Heat of formation + Delta-G solvation = -74.907467 kcal Electronic energy + Delta-G solvation = -26587.995509 eV Core-core repulsion = 22764.682984 eV Total energy + Delta-G solvation = -3823.312525 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.52572 -41.06982 -39.67572 -38.62137 -36.23596 -35.56789 -34.53781 -31.86168 -31.19766 -30.15904 -28.80523 -28.14048 -27.13096 -26.81760 -24.22658 -23.54924 -22.04680 -21.09667 -20.00657 -19.32416 -18.67996 -18.11948 -17.91726 -17.30101 -17.04638 -16.68676 -16.63633 -16.48882 -15.66388 -15.46865 -15.43834 -14.94615 -14.70577 -14.50392 -14.40015 -14.28429 -14.01875 -13.90072 -13.66961 -13.34146 -13.05955 -12.90619 -12.76912 -12.62439 -12.44221 -12.31644 -12.25190 -11.92481 -11.85301 -11.79684 -11.63225 -11.36177 -11.07112 -10.78873 -10.39622 -9.80007 -9.61526 -9.14180 -8.41294 -6.53811 0.34380 0.49778 1.27241 1.29666 1.41947 1.64905 1.89973 2.19473 2.37350 2.78460 2.80041 3.22403 3.48513 3.78027 3.84482 3.91975 3.93044 4.06503 4.21480 4.29156 4.36027 4.38962 4.39379 4.44929 4.45701 4.57646 4.59790 4.67326 4.68428 4.70200 4.73352 4.83285 4.86891 4.96271 5.04952 5.07105 5.19280 5.31212 5.33346 5.38510 5.52816 5.68786 5.84714 6.05778 6.46905 6.54034 6.69071 6.82714 7.13400 7.17227 8.74069 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.016697 B = 0.002953 C = 0.002719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1676.541713 B = 9479.618817 C =10295.171065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.341 6.341 3 C 0.114 3.886 4 C -0.214 4.214 5 C -0.077 4.077 6 C -0.156 4.156 7 C -0.039 4.039 8 C -0.029 4.029 9 H 0.068 0.932 10 C -0.142 4.142 11 C -0.118 4.118 12 C 0.527 3.473 13 O -0.584 6.584 14 N -0.637 5.637 15 C 0.123 3.877 16 C 0.182 3.818 17 O -0.562 6.562 18 C -0.543 4.543 19 H 0.055 0.945 20 C 0.027 3.973 21 N -0.925 5.925 22 Si 0.917 3.083 23 H -0.260 1.260 24 H -0.225 1.225 25 H -0.282 1.282 26 C 0.078 3.922 27 C -0.169 4.169 28 H 0.064 0.936 29 H 0.115 0.885 30 H 0.066 0.934 31 H 0.149 0.851 32 H 0.152 0.848 33 H 0.138 0.862 34 H 0.055 0.945 35 H 0.068 0.932 36 H 0.058 0.942 37 H 0.116 0.884 38 H 0.098 0.902 39 H 0.066 0.934 40 H 0.101 0.899 41 H 0.357 0.643 42 H 0.273 0.727 43 H 0.107 0.893 44 H 0.088 0.912 45 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.573 -6.446 12.106 26.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.255 6.255 3 C 0.069 3.931 4 C -0.232 4.232 5 C -0.095 4.095 6 C -0.174 4.174 7 C -0.039 4.039 8 C -0.048 4.048 9 H 0.087 0.913 10 C -0.199 4.199 11 C -0.157 4.157 12 C 0.319 3.681 13 O -0.465 6.465 14 N -0.371 5.371 15 C 0.001 3.999 16 C 0.142 3.858 17 O -0.373 6.373 18 C -0.581 4.581 19 H 0.073 0.927 20 C -0.174 4.174 21 N -0.562 5.562 22 Si 0.741 3.259 23 H -0.186 1.186 24 H -0.149 1.149 25 H -0.208 1.208 26 C -0.045 4.045 27 C -0.188 4.188 28 H 0.083 0.917 29 H 0.134 0.866 30 H 0.085 0.915 31 H 0.167 0.833 32 H 0.170 0.830 33 H 0.156 0.844 34 H 0.074 0.926 35 H 0.087 0.913 36 H 0.077 0.923 37 H 0.134 0.866 38 H 0.116 0.884 39 H 0.085 0.915 40 H 0.119 0.881 41 H 0.209 0.791 42 H 0.083 0.917 43 H 0.125 0.875 44 H 0.106 0.894 45 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -22.024 -7.156 13.113 26.612 hybrid contribution -0.217 0.076 -1.257 1.278 sum -22.241 -7.080 11.856 26.179 Atomic orbital electron populations 1.23330 0.76425 1.05447 1.02315 1.86047 1.23538 1.27143 1.88788 1.19151 0.92196 0.84992 0.96751 1.21507 1.01085 0.91935 1.08702 1.21270 0.94372 0.97918 0.95952 1.21161 0.94225 0.98231 1.03785 1.19572 0.94483 0.92686 0.97151 1.19780 0.90364 1.00160 0.94529 0.91321 1.21875 1.01724 1.00201 0.96076 1.21679 0.89296 1.04379 1.00361 1.20906 0.91230 0.77279 0.78734 1.90609 1.69917 1.46899 1.39121 1.50197 1.09334 1.53443 1.24133 1.23214 0.84075 1.01238 0.91380 1.20630 0.92994 0.82334 0.89873 1.86465 1.87981 1.33745 1.29155 1.21348 1.20764 1.16760 0.99206 0.92695 1.25837 0.98525 0.95604 0.97410 1.70003 1.42764 1.31466 1.11979 0.86368 0.80361 0.79063 0.80102 1.18591 1.14883 1.20788 1.24495 0.99956 0.97582 0.82476 1.20433 0.92066 0.98307 1.08003 0.91690 0.86633 0.91527 0.83315 0.83027 0.84405 0.92618 0.91345 0.92276 0.86629 0.88354 0.91537 0.88146 0.79129 0.91745 0.87512 0.89391 0.86096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 9.81 113.37 1.11 1.31 16 2 O -0.34 -6.91 10.50 -92.39 -0.97 -7.88 16 3 C 0.11 2.43 6.69 22.51 0.15 2.58 16 4 C -0.21 -3.55 9.04 22.37 0.20 -3.35 16 5 C -0.08 -1.21 10.04 22.26 0.22 -0.99 16 6 C -0.16 -2.87 8.76 22.28 0.20 -2.68 16 7 C -0.04 -0.86 4.78 -19.88 -0.10 -0.96 16 8 C -0.03 -0.74 2.21 -11.54 -0.03 -0.76 16 9 H 0.07 1.96 7.69 -2.38 -0.02 1.95 16 10 C -0.14 -3.45 8.74 71.98 0.63 -2.82 16 11 C -0.12 -3.08 4.67 29.85 0.14 -2.94 16 12 C 0.53 18.69 7.77 87.65 0.68 19.37 16 13 O -0.58 -24.11 14.69 -3.03 -0.04 -24.16 16 14 N -0.64 -23.88 3.61 -839.59 -3.03 -26.91 16 15 C 0.12 5.07 8.23 86.49 0.71 5.78 16 16 C 0.18 8.00 1.06 -10.88 -0.01 7.99 16 17 O -0.56 -25.29 13.35 -148.98 -1.99 -27.28 16 18 C -0.54 -27.95 9.19 25.60 0.24 -27.71 16 19 H 0.05 3.13 8.06 -2.91 -0.02 3.11 16 20 C 0.03 1.41 5.47 84.66 0.46 1.88 16 21 N -0.92 -52.19 13.96 21.45 0.30 -51.89 16 22 Si 0.92 37.05 24.31 68.60 1.67 38.71 16 23 H -0.26 -10.21 7.05 99.48 0.70 -9.51 16 24 H -0.23 -7.94 5.16 99.48 0.51 -7.42 16 25 H -0.28 -11.31 7.11 99.48 0.71 -10.60 16 26 C 0.08 2.81 7.10 86.45 0.61 3.43 16 27 C -0.17 -4.00 9.61 22.37 0.21 -3.79 16 28 H 0.06 0.56 7.66 -2.39 -0.02 0.54 16 29 H 0.12 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.07 0.54 7.66 -2.39 -0.02 0.52 16 31 H 0.15 1.65 6.30 -2.91 -0.02 1.63 16 32 H 0.15 1.50 8.06 -2.91 -0.02 1.47 16 33 H 0.14 2.11 7.15 -2.91 -0.02 2.09 16 34 H 0.05 1.67 5.95 -2.39 -0.01 1.65 16 35 H 0.07 1.39 7.37 -2.39 -0.02 1.38 16 36 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 37 H 0.12 2.49 7.58 -2.39 -0.02 2.47 16 38 H 0.10 2.47 8.14 -2.39 -0.02 2.45 16 39 H 0.07 2.81 8.14 -2.39 -0.02 2.79 16 40 H 0.10 3.91 8.09 -2.39 -0.02 3.89 16 41 H 0.36 14.90 3.57 -74.06 -0.26 14.64 16 42 H 0.27 14.35 8.31 -92.71 -0.77 13.58 16 43 H 0.11 3.64 8.09 -2.38 -0.02 3.62 16 44 H 0.09 2.88 6.83 -2.39 -0.02 2.86 16 45 H 0.12 2.92 7.94 -2.91 -0.02 2.90 16 Total: -1.00 -66.89 361.80 1.91 -64.98 By element: Atomic # 1 Polarization: 37.55 SS G_CDS: 0.54 Total: 38.08 kcal Atomic # 6 Polarization: -9.10 SS G_CDS: 5.44 Total: -3.66 kcal Atomic # 7 Polarization: -76.07 SS G_CDS: -2.73 Total: -78.80 kcal Atomic # 8 Polarization: -56.32 SS G_CDS: -3.00 Total: -59.32 kcal Atomic # 14 Polarization: 37.05 SS G_CDS: 1.67 Total: 38.71 kcal Total: -66.89 1.91 -64.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186821034.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.928 kcal (2) G-P(sol) polarization free energy of solvation -66.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds