Wall clock time and date at job start Tue Mar 31 2020 12:37:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35891 * 117.00641 * 2 1 4 4 C 1.38759 * 120.05236 * 0.24918 * 3 2 1 5 5 C 1.38124 * 119.94440 * 180.27807 * 4 3 2 6 6 C 1.38297 * 120.05497 * 359.72364 * 5 4 3 7 7 C 1.38245 * 120.10801 * 0.02562 * 6 5 4 8 8 C 1.38159 * 120.05709 * 359.97438 * 7 6 5 9 9 C 1.50703 * 120.02580 * 179.97438 * 8 7 6 10 10 H 1.09000 * 109.47269 * 179.97438 * 9 8 7 11 11 C 1.52990 * 109.47671 * 299.99986 * 9 8 7 12 12 C 1.53002 * 109.46988 * 60.00413 * 9 8 7 13 13 C 1.50703 * 109.47342 * 174.99876 * 12 9 8 14 14 O 1.21276 * 119.99655 * 359.97438 * 13 12 9 15 15 N 1.34777 * 119.99851 * 179.97438 * 13 12 9 16 16 C 1.47585 * 134.48714 * 179.97438 * 15 13 12 17 17 C 1.53946 * 86.11303 * 155.35829 * 16 15 13 18 18 O 1.42897 * 113.74194 * 269.15036 * 17 16 15 19 19 C 1.50705 * 113.74193 * 137.95267 * 17 16 15 20 20 H 1.08000 * 119.99753 * 17.18899 * 19 17 16 21 21 C 1.37873 * 119.99893 * 197.19270 * 19 17 16 22 22 N 1.31513 * 119.99896 * 194.35422 * 21 19 17 23 23 Si 1.86797 * 120.00211 * 14.35029 * 21 19 17 24 24 H 1.48498 * 109.46923 * 180.02562 * 23 21 19 25 25 H 1.48497 * 109.47361 * 300.00177 * 23 21 19 26 26 H 1.48501 * 109.47273 * 60.00378 * 23 21 19 27 27 C 1.47807 * 134.46136 * 359.86744 * 15 13 12 28 28 H 1.08999 * 109.47347 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.46977 * 300.00328 * 1 2 3 30 30 H 1.09005 * 109.46568 * 60.00335 * 1 2 3 31 31 H 1.07996 * 120.02717 * 0.02562 * 4 3 2 32 32 H 1.07996 * 119.97415 * 179.74552 * 5 4 3 33 33 H 1.08001 * 119.94374 * 180.02562 * 6 5 4 34 34 H 1.08004 * 119.97075 * 179.97438 * 7 6 5 35 35 H 1.09000 * 109.47022 * 59.99545 * 11 9 8 36 36 H 1.08996 * 109.47722 * 180.02562 * 11 9 8 37 37 H 1.09005 * 109.47340 * 300.00433 * 11 9 8 38 38 H 1.08997 * 109.47707 * 54.99305 * 12 9 8 39 39 H 1.09003 * 109.46854 * 294.99832 * 12 9 8 40 40 H 1.08992 * 113.77064 * 41.05629 * 16 15 13 41 41 H 1.09002 * 113.86851 * 269.67132 * 16 15 13 42 42 H 0.96694 * 114.00247 * 174.14979 * 18 17 16 43 43 H 0.97009 * 119.99986 * 354.85954 * 22 21 19 44 44 H 1.08994 * 113.77033 * 90.37473 * 27 15 13 45 45 H 1.09004 * 113.83092 * 318.91824 * 27 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2107 0.0000 4 6 1.2916 2.3752 0.0052 5 6 1.9210 3.6047 -0.0006 6 6 3.3022 3.6756 -0.0058 7 6 4.0561 2.5169 -0.0058 8 6 3.4312 1.2847 0.0000 9 6 4.2538 0.0220 -0.0006 10 1 3.5910 -0.8434 0.0050 11 6 5.1309 -0.0149 -1.2535 12 6 5.1419 -0.0086 1.2449 13 6 5.8729 -1.3250 1.3084 14 8 5.7001 -2.1569 0.4431 15 7 6.7187 -1.5776 2.3270 16 6 7.5755 -2.7197 2.7007 17 6 8.4291 -1.6934 3.4677 18 8 9.4867 -1.1289 2.6901 19 6 8.8869 -2.1749 4.8203 20 1 8.8578 -3.2283 5.0568 21 6 9.3427 -1.2706 5.7560 22 7 9.9991 -1.6938 6.8141 23 14 9.0279 0.5555 5.5207 24 1 9.6157 1.3095 6.6570 25 1 9.6536 1.0063 4.2517 26 1 7.5646 0.8027 5.4662 27 6 7.1615 -0.8209 3.5169 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 0.2130 2.3203 0.0097 32 1 1.3342 4.5113 -0.0007 33 1 3.7925 4.6379 -0.0100 34 1 5.1346 2.5749 -0.0103 35 1 5.7936 0.8505 -1.2586 36 1 5.7255 -0.9284 -1.2542 37 1 4.4981 0.0069 -2.1408 38 1 4.5237 0.1070 2.1351 39 1 5.8644 0.8061 1.1960 40 1 8.0914 -3.1767 1.8563 41 1 7.0827 -3.4492 3.3434 42 1 9.9690 -0.4203 3.1377 43 1 10.0981 -2.6453 6.9750 44 1 6.5453 -0.9906 4.3998 45 1 7.3473 0.2355 3.3230 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000186847082.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:37:00 Heat of formation + Delta-G solvation = -61.839291 kcal Electronic energy + Delta-G solvation = -27085.271751 eV Core-core repulsion = 23262.525905 eV Total energy + Delta-G solvation = -3822.745846 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.57613 -39.71716 -38.04286 -37.45694 -34.92370 -34.17134 -32.62796 -30.35562 -30.22102 -29.19642 -27.43531 -27.24121 -25.63406 -24.69075 -23.53516 -22.23539 -20.56270 -19.70556 -18.45461 -18.21661 -17.95519 -16.85630 -16.34157 -15.94102 -15.70260 -15.58802 -15.34674 -14.92074 -14.59297 -14.39667 -13.84473 -13.74487 -13.56829 -13.34741 -13.16648 -12.76060 -12.57172 -12.45125 -12.23395 -12.09129 -11.98267 -11.85424 -11.48683 -11.32088 -11.23122 -11.06467 -10.79304 -10.69241 -10.58711 -10.42550 -9.97403 -9.47928 -9.29826 -9.03217 -8.97551 -8.47026 -8.28708 -7.96737 -6.73642 -4.47250 1.15241 1.28500 3.06962 3.09880 3.12821 3.16305 3.27515 3.45215 3.61875 4.17140 4.50636 4.60869 4.74775 4.83853 4.87144 4.89818 4.98727 5.06565 5.16266 5.21266 5.25151 5.26416 5.31995 5.45832 5.52371 5.57595 5.74336 5.82085 5.91216 5.96321 6.05050 6.07802 6.15232 6.19475 6.26297 6.32786 6.34783 6.48633 6.54651 6.57936 6.62645 6.73129 7.22728 7.55822 8.07744 8.33305 8.56793 8.66931 8.71517 9.28377 10.62594 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.017142 B = 0.003318 C = 0.003095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1633.009116 B = 8437.066911 C = 9044.550320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.311 6.311 3 C 0.129 3.871 4 C -0.209 4.209 5 C -0.088 4.088 6 C -0.155 4.155 7 C -0.077 4.077 8 C -0.102 4.102 9 C -0.029 4.029 10 H 0.093 0.907 11 C -0.146 4.146 12 C -0.127 4.127 13 C 0.531 3.469 14 O -0.555 6.555 15 N -0.633 5.633 16 C 0.128 3.872 17 C 0.199 3.801 18 O -0.566 6.566 19 C -0.617 4.617 20 H 0.070 0.930 21 C 0.035 3.965 22 N -0.887 5.887 23 Si 1.040 2.960 24 H -0.278 1.278 25 H -0.279 1.279 26 H -0.273 1.273 27 C 0.057 3.943 28 H 0.099 0.901 29 H 0.054 0.946 30 H 0.053 0.947 31 H 0.126 0.874 32 H 0.122 0.878 33 H 0.123 0.877 34 H 0.129 0.871 35 H 0.048 0.952 36 H 0.081 0.919 37 H 0.050 0.950 38 H 0.088 0.912 39 H 0.089 0.911 40 H 0.072 0.928 41 H 0.090 0.910 42 H 0.366 0.634 43 H 0.274 0.726 44 H 0.094 0.906 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.870 10.718 -11.522 23.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.224 6.224 3 C 0.084 3.916 4 C -0.227 4.227 5 C -0.106 4.106 6 C -0.173 4.173 7 C -0.095 4.095 8 C -0.103 4.103 9 C -0.047 4.047 10 H 0.111 0.889 11 C -0.203 4.203 12 C -0.167 4.167 13 C 0.321 3.679 14 O -0.435 6.435 15 N -0.367 5.367 16 C 0.007 3.993 17 C 0.158 3.842 18 O -0.374 6.374 19 C -0.655 4.655 20 H 0.088 0.912 21 C -0.173 4.173 22 N -0.520 5.520 23 Si 0.868 3.132 24 H -0.204 1.204 25 H -0.206 1.206 26 H -0.199 1.199 27 C -0.066 4.066 28 H 0.118 0.882 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.143 0.857 32 H 0.140 0.860 33 H 0.141 0.859 34 H 0.147 0.853 35 H 0.067 0.933 36 H 0.099 0.901 37 H 0.069 0.931 38 H 0.107 0.893 39 H 0.107 0.893 40 H 0.091 0.909 41 H 0.108 0.892 42 H 0.216 0.784 43 H 0.084 0.916 44 H 0.112 0.888 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -16.911 11.158 -11.904 23.499 hybrid contribution -0.549 -0.806 -0.029 0.976 sum -17.460 10.352 -11.933 23.546 Atomic orbital electron populations 1.23052 0.78640 1.03970 1.01098 1.86123 1.21064 1.26705 1.88538 1.18859 0.91822 0.84252 0.96675 1.21194 0.99838 0.92396 1.09310 1.20898 0.94716 0.96811 0.98185 1.21051 0.93886 0.98379 1.04030 1.20926 1.00166 0.91022 0.97426 1.19333 0.90356 0.95918 1.04696 1.19710 0.95701 0.94911 0.94410 0.88874 1.21946 0.99337 1.03060 0.95967 1.21670 0.99086 0.96140 0.99765 1.20186 0.77949 0.88879 0.80859 1.90608 1.64832 1.49073 1.38993 1.50192 1.42696 1.20672 1.23189 1.23181 0.88251 0.90651 0.97251 1.20412 0.83418 0.89413 0.90947 1.86375 1.48688 1.55813 1.46495 1.22207 1.49708 0.96493 0.97079 0.91218 1.25833 0.91764 1.06019 0.93636 1.70807 1.33167 1.18332 1.29701 0.84147 0.77362 0.75246 0.76470 1.20389 1.20622 1.19857 1.24680 0.98258 0.97156 0.86496 0.88234 0.92748 0.92811 0.85656 0.86031 0.85927 0.85282 0.93298 0.90069 0.93112 0.89328 0.89267 0.90926 0.89234 0.78437 0.91550 0.88809 0.91702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 9.81 101.05 0.99 1.20 16 2 O -0.31 -3.79 9.26 -19.40 -0.18 -3.97 16 3 C 0.13 1.58 6.66 -39.21 -0.26 1.32 16 4 C -0.21 -2.10 9.04 -39.43 -0.36 -2.45 16 5 C -0.09 -0.82 10.04 -39.60 -0.40 -1.21 16 6 C -0.16 -1.51 10.04 -39.56 -0.40 -1.91 16 7 C -0.08 -0.86 8.76 -39.61 -0.35 -1.21 16 8 C -0.10 -1.30 4.79 -104.48 -0.50 -1.81 16 9 C -0.03 -0.41 2.17 -91.77 -0.20 -0.61 16 10 H 0.09 1.51 6.81 -51.93 -0.35 1.16 16 11 C -0.15 -2.06 8.75 37.15 0.32 -1.74 16 12 C -0.13 -1.93 4.66 -27.88 -0.13 -2.06 16 13 C 0.53 10.22 7.77 -10.98 -0.09 10.14 16 14 O -0.56 -12.00 14.69 5.56 0.08 -11.91 16 15 N -0.63 -12.81 3.61 -178.11 -0.64 -13.45 16 16 C 0.13 2.75 8.23 -2.96 -0.02 2.72 16 17 C 0.20 4.52 1.07 -90.84 -0.10 4.43 16 18 O -0.57 -13.01 13.47 -35.23 -0.47 -13.49 16 19 C -0.62 -15.92 9.04 -34.44 -0.31 -16.23 16 20 H 0.07 1.94 8.06 -52.49 -0.42 1.52 16 21 C 0.04 0.92 5.44 -17.82 -0.10 0.83 16 22 N -0.89 -25.04 13.70 55.43 0.76 -24.28 16 23 Si 1.04 21.92 24.56 -169.99 -4.17 17.74 16 24 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 25 H -0.28 -5.30 5.81 56.52 0.33 -4.97 16 26 H -0.27 -5.23 6.48 56.52 0.37 -4.86 16 27 C 0.06 1.14 5.39 -2.83 -0.02 1.13 16 28 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.05 0.36 7.65 -51.93 -0.40 -0.04 16 30 H 0.05 0.34 7.67 -51.93 -0.40 -0.06 16 31 H 0.13 0.97 6.30 -52.49 -0.33 0.64 16 32 H 0.12 0.83 8.06 -52.49 -0.42 0.40 16 33 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 34 H 0.13 1.30 7.16 -52.48 -0.38 0.92 16 35 H 0.05 0.62 7.39 -51.93 -0.38 0.23 16 36 H 0.08 1.35 5.95 -51.93 -0.31 1.04 16 37 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 39 H 0.09 1.24 7.57 -51.93 -0.39 0.84 16 40 H 0.07 1.57 8.14 -51.93 -0.42 1.15 16 41 H 0.09 1.82 8.09 -51.93 -0.42 1.40 16 42 H 0.37 7.77 6.07 45.56 0.28 8.04 16 43 H 0.27 7.73 8.73 -40.82 -0.36 7.38 16 44 H 0.09 1.84 7.97 -51.93 -0.41 1.42 16 45 H 0.06 1.19 6.87 -51.93 -0.36 0.83 16 LS Contribution 361.33 15.07 5.45 5.45 Total: -1.00 -31.01 361.33 -7.17 -38.17 By element: Atomic # 1 Polarization: 19.30 SS G_CDS: -6.08 Total: 13.22 kcal Atomic # 6 Polarization: -5.57 SS G_CDS: -1.90 Total: -7.47 kcal Atomic # 7 Polarization: -37.85 SS G_CDS: 0.12 Total: -37.73 kcal Atomic # 8 Polarization: -28.80 SS G_CDS: -0.57 Total: -29.38 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -4.17 Total: 17.74 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -31.01 -7.17 -38.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186847082.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.668 kcal (2) G-P(sol) polarization free energy of solvation -31.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.171 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds