Wall clock time and date at job start Tue Mar 31 2020 12:36:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35891 * 117.00641 * 2 1 4 4 C 1.38759 * 120.05236 * 0.24918 * 3 2 1 5 5 C 1.38124 * 119.94440 * 180.27807 * 4 3 2 6 6 C 1.38297 * 120.05497 * 359.72364 * 5 4 3 7 7 C 1.38245 * 120.10801 * 0.02562 * 6 5 4 8 8 C 1.38159 * 120.05709 * 359.97438 * 7 6 5 9 9 C 1.50703 * 120.02580 * 179.97438 * 8 7 6 10 10 H 1.09000 * 109.47269 * 179.97438 * 9 8 7 11 11 C 1.52990 * 109.47671 * 299.99986 * 9 8 7 12 12 C 1.53002 * 109.46988 * 60.00413 * 9 8 7 13 13 C 1.50703 * 109.47342 * 174.99876 * 12 9 8 14 14 O 1.21276 * 119.99655 * 359.97438 * 13 12 9 15 15 N 1.34777 * 119.99851 * 179.97438 * 13 12 9 16 16 C 1.47585 * 134.48714 * 179.97438 * 15 13 12 17 17 C 1.53946 * 86.11303 * 155.35829 * 16 15 13 18 18 O 1.42897 * 113.74194 * 269.15036 * 17 16 15 19 19 C 1.50705 * 113.74193 * 137.95267 * 17 16 15 20 20 H 1.08000 * 119.99753 * 17.18899 * 19 17 16 21 21 C 1.37873 * 119.99893 * 197.19270 * 19 17 16 22 22 N 1.31513 * 119.99896 * 194.35422 * 21 19 17 23 23 Si 1.86797 * 120.00211 * 14.35029 * 21 19 17 24 24 H 1.48498 * 109.46923 * 180.02562 * 23 21 19 25 25 H 1.48497 * 109.47361 * 300.00177 * 23 21 19 26 26 H 1.48501 * 109.47273 * 60.00378 * 23 21 19 27 27 C 1.47807 * 134.46136 * 359.86744 * 15 13 12 28 28 H 1.08999 * 109.47347 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.46977 * 300.00328 * 1 2 3 30 30 H 1.09005 * 109.46568 * 60.00335 * 1 2 3 31 31 H 1.07996 * 120.02717 * 0.02562 * 4 3 2 32 32 H 1.07996 * 119.97415 * 179.74552 * 5 4 3 33 33 H 1.08001 * 119.94374 * 180.02562 * 6 5 4 34 34 H 1.08004 * 119.97075 * 179.97438 * 7 6 5 35 35 H 1.09000 * 109.47022 * 59.99545 * 11 9 8 36 36 H 1.08996 * 109.47722 * 180.02562 * 11 9 8 37 37 H 1.09005 * 109.47340 * 300.00433 * 11 9 8 38 38 H 1.08997 * 109.47707 * 54.99305 * 12 9 8 39 39 H 1.09003 * 109.46854 * 294.99832 * 12 9 8 40 40 H 1.08992 * 113.77064 * 41.05629 * 16 15 13 41 41 H 1.09002 * 113.86851 * 269.67132 * 16 15 13 42 42 H 0.96694 * 114.00247 * 174.14979 * 18 17 16 43 43 H 0.97009 * 119.99986 * 354.85954 * 22 21 19 44 44 H 1.08994 * 113.77033 * 90.37473 * 27 15 13 45 45 H 1.09004 * 113.83092 * 318.91824 * 27 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2107 0.0000 4 6 1.2916 2.3752 0.0052 5 6 1.9210 3.6047 -0.0006 6 6 3.3022 3.6756 -0.0058 7 6 4.0561 2.5169 -0.0058 8 6 3.4312 1.2847 0.0000 9 6 4.2538 0.0220 -0.0006 10 1 3.5910 -0.8434 0.0050 11 6 5.1309 -0.0149 -1.2535 12 6 5.1419 -0.0086 1.2449 13 6 5.8729 -1.3250 1.3084 14 8 5.7001 -2.1569 0.4431 15 7 6.7187 -1.5776 2.3270 16 6 7.5755 -2.7197 2.7007 17 6 8.4291 -1.6934 3.4677 18 8 9.4867 -1.1289 2.6901 19 6 8.8869 -2.1749 4.8203 20 1 8.8578 -3.2283 5.0568 21 6 9.3427 -1.2706 5.7560 22 7 9.9991 -1.6938 6.8141 23 14 9.0279 0.5555 5.5207 24 1 9.6157 1.3095 6.6570 25 1 9.6536 1.0063 4.2517 26 1 7.5646 0.8027 5.4662 27 6 7.1615 -0.8209 3.5169 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 0.2130 2.3203 0.0097 32 1 1.3342 4.5113 -0.0007 33 1 3.7925 4.6379 -0.0100 34 1 5.1346 2.5749 -0.0103 35 1 5.7936 0.8505 -1.2586 36 1 5.7255 -0.9284 -1.2542 37 1 4.4981 0.0069 -2.1408 38 1 4.5237 0.1070 2.1351 39 1 5.8644 0.8061 1.1960 40 1 8.0914 -3.1767 1.8563 41 1 7.0827 -3.4492 3.3434 42 1 9.9690 -0.4203 3.1377 43 1 10.0981 -2.6453 6.9750 44 1 6.5453 -0.9906 4.3998 45 1 7.3473 0.2355 3.3230 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000186847082.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:36:59 Heat of formation + Delta-G solvation = -83.626034 kcal Electronic energy + Delta-G solvation = -27086.216495 eV Core-core repulsion = 23262.525905 eV Total energy + Delta-G solvation = -3823.690590 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.59002 -41.10613 -39.48232 -38.37751 -36.11328 -35.82899 -34.64069 -31.44752 -31.01824 -30.48573 -28.72504 -28.05072 -27.24386 -26.45269 -24.50268 -22.98196 -21.96352 -21.07553 -20.01162 -19.86034 -19.01209 -18.14234 -17.58235 -17.25319 -16.86533 -16.66685 -16.42889 -16.36581 -15.82486 -15.35230 -15.26054 -15.02092 -14.85089 -14.59838 -14.36261 -14.09359 -14.04087 -13.81010 -13.55818 -13.30265 -12.94405 -12.88382 -12.70586 -12.48815 -12.42915 -12.20983 -12.12631 -11.96902 -11.75306 -11.63659 -11.56424 -11.28471 -10.95292 -10.80418 -10.30904 -9.76248 -9.64970 -9.06486 -8.82263 -6.58855 0.39499 0.53247 1.43315 1.52524 1.61862 1.66291 1.90416 2.42684 2.44894 2.84058 2.91795 3.25741 3.54754 3.74460 3.77144 3.90277 4.06295 4.10044 4.20393 4.29849 4.34518 4.36689 4.38382 4.42784 4.50680 4.53678 4.59292 4.62906 4.64996 4.71521 4.77511 4.78512 4.83552 4.98159 5.02760 5.13489 5.24593 5.34208 5.48151 5.59858 5.63531 5.66290 5.91254 5.92179 6.40359 6.50148 6.77130 6.97200 7.13526 7.28134 8.52565 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.017142 B = 0.003318 C = 0.003095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1633.009116 B = 8437.066911 C = 9044.550320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.340 6.340 3 C 0.110 3.890 4 C -0.211 4.211 5 C -0.086 4.086 6 C -0.157 4.157 7 C -0.084 4.084 8 C -0.124 4.124 9 C -0.020 4.020 10 H 0.066 0.934 11 C -0.140 4.140 12 C -0.117 4.117 13 C 0.526 3.474 14 O -0.584 6.584 15 N -0.635 5.635 16 C 0.122 3.878 17 C 0.192 3.808 18 O -0.572 6.572 19 C -0.624 4.624 20 H 0.029 0.971 21 C -0.009 4.009 22 N -0.921 5.921 23 Si 1.070 2.930 24 H -0.289 1.289 25 H -0.242 1.242 26 H -0.234 1.234 27 C 0.070 3.930 28 H 0.109 0.891 29 H 0.065 0.935 30 H 0.067 0.933 31 H 0.146 0.854 32 H 0.150 0.850 33 H 0.146 0.854 34 H 0.139 0.861 35 H 0.066 0.934 36 H 0.050 0.950 37 H 0.054 0.946 38 H 0.101 0.899 39 H 0.112 0.888 40 H 0.063 0.937 41 H 0.091 0.909 42 H 0.374 0.626 43 H 0.257 0.743 44 H 0.100 0.900 45 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.754 14.674 -12.532 26.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.254 6.254 3 C 0.065 3.935 4 C -0.230 4.230 5 C -0.104 4.104 6 C -0.175 4.175 7 C -0.101 4.101 8 C -0.124 4.124 9 C -0.039 4.039 10 H 0.084 0.916 11 C -0.197 4.197 12 C -0.156 4.156 13 C 0.318 3.682 14 O -0.466 6.466 15 N -0.369 5.369 16 C -0.001 4.001 17 C 0.151 3.849 18 O -0.381 6.381 19 C -0.662 4.662 20 H 0.048 0.952 21 C -0.209 4.209 22 N -0.555 5.555 23 Si 0.889 3.111 24 H -0.215 1.215 25 H -0.167 1.167 26 H -0.158 1.158 27 C -0.053 4.053 28 H 0.127 0.873 29 H 0.084 0.916 30 H 0.085 0.915 31 H 0.163 0.837 32 H 0.168 0.832 33 H 0.164 0.836 34 H 0.157 0.843 35 H 0.084 0.916 36 H 0.069 0.931 37 H 0.073 0.927 38 H 0.119 0.881 39 H 0.130 0.870 40 H 0.081 0.919 41 H 0.109 0.891 42 H 0.225 0.775 43 H 0.066 0.934 44 H 0.118 0.882 45 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -18.815 15.095 -12.938 27.373 hybrid contribution 0.014 -2.159 0.251 2.174 sum -18.801 12.936 -12.686 26.111 Atomic orbital electron populations 1.23294 0.76765 1.05118 1.02283 1.86086 1.23203 1.27368 1.88746 1.19108 0.92037 0.84949 0.97391 1.21475 1.00916 0.91991 1.08613 1.21303 0.94983 0.97536 0.96568 1.21375 0.94222 0.98883 1.03040 1.21093 1.00851 0.90844 0.97354 1.19247 0.90624 0.95502 1.07052 1.19521 0.95225 0.95231 0.93943 0.91592 1.21865 0.99312 1.02169 0.96396 1.21704 0.99281 0.93912 1.00738 1.20982 0.77385 0.90045 0.79747 1.90604 1.65603 1.50451 1.39909 1.50194 1.42989 1.20036 1.23679 1.23133 0.88799 0.91211 0.96955 1.20348 0.84291 0.91056 0.89194 1.86359 1.49116 1.56274 1.46386 1.22312 1.49888 0.94834 0.99154 0.95225 1.27395 0.90346 1.10723 0.92451 1.70959 1.35857 1.17181 1.31548 0.83879 0.79942 0.69488 0.77791 1.21499 1.16681 1.15755 1.24532 0.95918 0.98154 0.86661 0.87283 0.91602 0.91460 0.83658 0.83232 0.83577 0.84337 0.91553 0.93081 0.92682 0.88121 0.87027 0.91898 0.89091 0.77511 0.93402 0.88173 0.88682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 9.81 113.37 1.11 1.39 16 2 O -0.34 -8.04 9.26 -92.32 -0.86 -8.89 16 3 C 0.11 2.50 6.66 22.51 0.15 2.65 16 4 C -0.21 -3.62 9.04 22.37 0.20 -3.42 16 5 C -0.09 -1.25 10.04 22.26 0.22 -1.03 16 6 C -0.16 -2.44 10.04 22.29 0.22 -2.21 16 7 C -0.08 -1.60 8.76 22.25 0.19 -1.40 16 8 C -0.12 -2.91 4.79 -19.77 -0.09 -3.00 16 9 C -0.02 -0.56 2.17 -11.54 -0.03 -0.59 16 10 H 0.07 2.17 6.81 -2.39 -0.02 2.16 16 11 C -0.14 -3.85 8.75 71.98 0.63 -3.22 16 12 C -0.12 -3.29 4.66 29.85 0.14 -3.15 16 13 C 0.53 19.69 7.77 87.66 0.68 20.37 16 14 O -0.58 -25.47 14.69 -3.02 -0.04 -25.51 16 15 N -0.63 -24.76 3.61 -839.66 -3.03 -27.80 16 16 C 0.12 5.24 8.23 86.49 0.71 5.95 16 17 C 0.19 8.55 1.07 -10.87 -0.01 8.53 16 18 O -0.57 -25.35 13.47 -148.98 -2.01 -27.36 16 19 C -0.62 -32.75 9.04 25.60 0.23 -32.52 16 20 H 0.03 1.73 8.06 -2.91 -0.02 1.71 16 21 C -0.01 -0.44 5.44 84.65 0.46 0.02 16 22 N -0.92 -53.35 13.70 21.45 0.29 -53.06 16 23 Si 1.07 41.34 24.56 68.60 1.68 43.03 16 24 H -0.29 -11.71 7.11 99.48 0.71 -11.01 16 25 H -0.24 -7.90 5.81 99.48 0.58 -7.32 16 26 H -0.23 -7.62 6.48 99.48 0.64 -6.98 16 27 C 0.07 2.58 5.39 86.45 0.47 3.05 16 28 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 29 H 0.07 0.74 7.65 -2.39 -0.02 0.72 16 30 H 0.07 0.72 7.67 -2.38 -0.02 0.71 16 31 H 0.15 1.77 6.30 -2.91 -0.02 1.75 16 32 H 0.15 1.30 8.06 -2.91 -0.02 1.27 16 33 H 0.15 1.53 8.06 -2.91 -0.02 1.51 16 34 H 0.14 2.27 7.16 -2.91 -0.02 2.25 16 35 H 0.07 1.55 7.39 -2.39 -0.02 1.53 16 36 H 0.05 1.71 5.95 -2.39 -0.01 1.69 16 37 H 0.05 1.42 8.14 -2.38 -0.02 1.40 16 38 H 0.10 2.62 8.14 -2.39 -0.02 2.60 16 39 H 0.11 2.66 7.57 -2.39 -0.02 2.65 16 40 H 0.06 2.78 8.14 -2.39 -0.02 2.76 16 41 H 0.09 3.81 8.09 -2.39 -0.02 3.79 16 42 H 0.37 14.85 6.07 -74.06 -0.45 14.40 16 43 H 0.26 15.24 8.73 -92.70 -0.81 14.44 16 44 H 0.10 3.61 7.97 -2.39 -0.02 3.59 16 45 H 0.10 2.98 6.87 -2.38 -0.02 2.97 16 Total: -1.00 -70.03 361.33 1.66 -68.37 By element: Atomic # 1 Polarization: 39.48 SS G_CDS: 0.33 Total: 39.80 kcal Atomic # 6 Polarization: -13.88 SS G_CDS: 5.29 Total: -8.58 kcal Atomic # 7 Polarization: -78.12 SS G_CDS: -2.74 Total: -80.85 kcal Atomic # 8 Polarization: -58.86 SS G_CDS: -2.91 Total: -61.76 kcal Atomic # 14 Polarization: 41.34 SS G_CDS: 1.68 Total: 43.03 kcal Total: -70.03 1.66 -68.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186847082.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.258 kcal (2) G-P(sol) polarization free energy of solvation -70.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds