Wall clock time and date at job start Tue Mar 31 2020 12:55:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35986 * 116.99939 * 2 1 4 4 C 1.38717 * 120.00128 * 0.02562 * 3 2 1 5 5 C 1.38108 * 119.99969 * 179.97438 * 4 3 2 6 6 C 1.38718 * 120.00209 * 0.02562 * 5 4 3 7 7 O 1.35980 * 120.00135 * 179.97438 * 6 5 4 8 8 C 1.42896 * 116.99988 * 0.02892 * 7 6 5 9 9 C 1.38677 * 120.00039 * 359.97438 * 6 5 4 10 10 C 1.50695 * 120.00351 * 179.97438 * 9 6 5 11 11 H 1.08999 * 115.55804 * 25.70940 * 10 9 6 12 12 C 1.53002 * 117.50044 * 171.39103 * 10 9 6 13 13 C 1.53000 * 60.02940 * 107.50594 * 12 10 9 14 14 H 1.09008 * 117.49673 * 107.47884 * 13 12 10 15 15 C 1.50692 * 117.50104 * 252.47218 * 13 12 10 16 16 O 1.21289 * 119.99816 * 68.61089 * 15 13 12 17 17 N 1.34775 * 120.00347 * 248.61074 * 15 13 12 18 18 C 1.46499 * 120.00113 * 179.97438 * 17 15 13 19 19 H 1.09003 * 109.47000 * 325.00290 * 18 17 15 20 20 C 1.53001 * 109.47074 * 85.00055 * 18 17 15 21 21 C 1.50700 * 109.47626 * 205.00174 * 18 17 15 22 22 H 1.07999 * 119.99342 * 0.02562 * 21 18 17 23 23 C 1.37871 * 120.00422 * 180.02562 * 21 18 17 24 24 N 1.31514 * 119.99977 * 359.97438 * 23 21 18 25 25 Si 1.86805 * 120.00061 * 179.97438 * 23 21 18 26 26 H 1.48501 * 109.46983 * 359.97438 * 25 23 21 27 27 H 1.48496 * 109.47022 * 119.99386 * 25 23 21 28 28 H 1.48495 * 109.47097 * 239.99954 * 25 23 21 29 29 C 1.38157 * 119.99767 * 0.25568 * 9 6 5 30 30 H 1.09005 * 109.47266 * 299.99985 * 1 2 3 31 31 H 1.09004 * 109.47377 * 59.99392 * 1 2 3 32 32 H 1.08999 * 109.47490 * 179.97438 * 1 2 3 33 33 H 1.07997 * 119.99966 * 359.94848 * 4 3 2 34 34 H 1.08000 * 120.00057 * 179.97438 * 5 4 3 35 35 H 1.09004 * 109.47253 * 299.99033 * 8 7 6 36 36 H 1.09000 * 109.47645 * 59.99552 * 8 7 6 37 37 H 1.09007 * 109.47403 * 179.97438 * 8 7 6 38 38 H 1.09002 * 117.49918 * 0.02562 * 12 10 9 39 39 H 1.09002 * 117.49754 * 215.00777 * 12 10 9 40 40 H 0.97001 * 119.99998 * 0.02562 * 17 15 13 41 41 H 1.08998 * 109.47094 * 300.00061 * 20 18 17 42 42 H 1.08998 * 109.47074 * 59.99775 * 20 18 17 43 43 H 1.09006 * 109.47370 * 180.02562 * 20 18 17 44 44 H 0.96998 * 119.99627 * 180.02562 * 24 23 21 45 45 H 1.07999 * 120.00183 * 179.74033 * 29 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2116 0.0000 4 6 1.2908 2.3750 0.0005 5 6 1.9179 3.6056 0.0011 6 6 3.3031 3.6782 0.0005 7 8 3.9205 4.8898 0.0005 8 6 3.0805 6.0458 0.0017 9 6 4.0584 2.5152 0.0000 10 6 5.5633 2.5940 -0.0012 11 1 5.9869 3.5034 0.4250 12 6 6.3392 1.2909 0.2014 13 6 6.3042 1.9531 -1.1774 14 1 7.2149 2.4413 -1.5246 15 6 5.4736 1.2911 -2.2464 16 8 4.2643 1.2799 -2.1547 17 7 6.0746 0.7114 -3.3043 18 6 5.2671 0.0673 -4.3433 19 1 4.3928 -0.3977 -3.8878 20 6 4.8148 1.1163 -5.3611 21 6 6.0907 -0.9855 -5.0392 22 1 7.1133 -1.1578 -4.7374 23 6 5.5389 -1.7285 -6.0610 24 7 4.2936 -1.5190 -6.4281 25 14 6.5602 -3.0331 -6.9241 26 1 7.9200 -3.0714 -6.3285 27 1 5.9104 -4.3583 -6.7612 28 1 6.6623 -2.7060 -8.3690 29 6 3.4312 1.2842 -0.0053 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3634 -1.0276 -0.0005 33 1 0.2123 2.3185 0.0001 34 1 1.3297 4.5114 0.0011 35 1 2.4506 6.0383 -0.8878 36 1 2.4519 6.0374 0.8922 37 1 3.6984 6.9439 0.0021 38 1 5.7611 0.3766 0.3351 39 1 7.2730 1.3431 0.7612 40 1 7.0418 0.7200 -3.3775 41 1 4.2190 1.8777 -4.8578 42 1 5.6890 1.5813 -5.8165 43 1 4.2136 0.6371 -6.1339 44 1 3.9053 -2.0420 -7.1468 45 1 4.0194 0.3784 -0.0100 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000188379767.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:55:26 Heat of formation + Delta-G solvation = -48.929830 kcal Electronic energy + Delta-G solvation = -27554.502917 eV Core-core repulsion = 23732.316867 eV Total energy + Delta-G solvation = -3822.186050 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.52010 -39.11762 -38.67110 -36.75273 -35.40543 -34.49001 -32.29716 -30.65966 -29.53985 -28.85819 -27.22625 -26.68175 -25.21648 -24.08375 -23.60773 -21.66415 -20.82101 -20.10068 -19.21066 -18.21494 -17.35113 -16.75415 -16.50808 -15.75141 -15.58520 -15.31981 -15.12849 -14.69892 -14.53281 -14.29022 -14.24167 -13.65964 -13.32763 -13.05108 -12.71984 -12.59884 -12.42736 -12.25635 -11.93279 -11.79651 -11.60477 -11.43514 -11.19306 -11.07266 -10.93366 -10.83740 -10.58829 -10.43373 -10.23790 -10.19624 -10.17867 -10.06039 -9.13026 -8.97153 -8.50408 -7.95318 -7.72548 -7.34169 -6.07766 -4.16561 1.55739 1.85380 3.25220 3.26543 3.33841 3.36791 3.44712 3.63251 3.98984 4.15002 4.32479 4.41989 4.79613 4.90668 5.06583 5.09789 5.16407 5.17176 5.23475 5.24570 5.29609 5.32602 5.43015 5.48638 5.56057 5.61412 5.65799 5.78421 5.92065 5.96596 6.11733 6.23979 6.52424 6.56553 6.66343 6.89437 6.94553 7.04540 7.22659 7.51984 7.56093 7.65150 7.76434 7.80072 7.98901 8.21149 8.78032 8.86075 9.26889 9.51763 10.98170 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.013757 B = 0.003871 C = 0.003461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2034.828986 B = 7230.610133 C = 8089.157062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.316 6.316 3 C 0.088 3.912 4 C -0.171 4.171 5 C -0.182 4.182 6 C 0.097 3.903 7 O -0.317 6.317 8 C 0.030 3.970 9 C -0.034 4.034 10 C -0.075 4.075 11 H 0.121 0.879 12 C -0.153 4.153 13 C -0.177 4.177 14 H 0.120 0.880 15 C 0.523 3.477 16 O -0.535 6.535 17 N -0.706 5.706 18 C 0.266 3.734 19 H 0.048 0.952 20 C -0.145 4.145 21 C -0.531 4.531 22 H 0.061 0.939 23 C 0.066 3.934 24 N -0.884 5.884 25 Si 0.900 3.100 26 H -0.273 1.273 27 H -0.283 1.283 28 H -0.283 1.283 29 C -0.035 4.035 30 H 0.048 0.952 31 H 0.052 0.948 32 H 0.095 0.905 33 H 0.122 0.878 34 H 0.123 0.877 35 H 0.051 0.949 36 H 0.049 0.951 37 H 0.094 0.906 38 H 0.102 0.898 39 H 0.105 0.895 40 H 0.387 0.613 41 H 0.014 0.986 42 H 0.024 0.976 43 H 0.088 0.912 44 H 0.263 0.737 45 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.542 10.677 15.308 18.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.230 6.230 3 C 0.043 3.957 4 C -0.189 4.189 5 C -0.200 4.200 6 C 0.053 3.947 7 O -0.231 6.231 8 C -0.065 4.065 9 C -0.035 4.035 10 C -0.093 4.093 11 H 0.139 0.861 12 C -0.190 4.190 13 C -0.198 4.198 14 H 0.138 0.862 15 C 0.308 3.692 16 O -0.413 6.413 17 N -0.353 5.353 18 C 0.164 3.836 19 H 0.066 0.934 20 C -0.204 4.204 21 C -0.570 4.570 22 H 0.079 0.921 23 C -0.137 4.137 24 N -0.521 5.521 25 Si 0.728 3.272 26 H -0.197 1.197 27 H -0.209 1.209 28 H -0.209 1.209 29 C -0.054 4.054 30 H 0.066 0.934 31 H 0.071 0.929 32 H 0.113 0.887 33 H 0.140 0.860 34 H 0.141 0.859 35 H 0.070 0.930 36 H 0.068 0.932 37 H 0.112 0.888 38 H 0.121 0.879 39 H 0.123 0.877 40 H 0.219 0.781 41 H 0.033 0.967 42 H 0.044 0.956 43 H 0.107 0.893 44 H 0.073 0.927 45 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -3.277 10.430 15.188 18.714 hybrid contribution 0.438 -0.372 -0.912 1.078 sum -2.839 10.058 14.276 17.693 Atomic orbital electron populations 1.22943 0.79304 1.03430 1.00717 1.86090 1.20559 1.26916 1.89477 1.18705 0.92137 0.83943 1.00892 1.20839 0.99341 0.91840 1.06926 1.20730 0.92950 0.97932 1.08432 1.18470 0.90604 0.84598 1.01050 1.86033 1.35290 1.12189 1.89591 1.22945 0.95814 0.86821 1.00929 1.17831 0.92702 0.89765 1.03154 1.20781 0.90221 0.97510 1.00817 0.86107 1.23118 1.02252 0.97012 0.96644 1.22458 1.01933 1.05064 0.90354 0.86170 1.19533 0.88111 0.79191 0.82404 1.90731 1.13857 1.59697 1.77042 1.46502 1.10288 1.55668 1.22866 1.18696 0.91463 0.89874 0.83521 0.93420 1.22057 0.99410 0.97747 1.01168 1.21274 0.98954 1.18749 1.17982 0.92089 1.24884 0.95030 0.97186 0.96625 1.69922 1.12820 1.40278 1.29115 0.86416 0.80210 0.81313 0.79294 1.19735 1.20903 1.20936 1.19806 0.90960 0.97118 0.97511 0.93355 0.92946 0.88680 0.85975 0.85927 0.93009 0.93200 0.88761 0.87925 0.87697 0.78104 0.96732 0.95644 0.89322 0.92734 0.85302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 9.81 101.05 0.99 1.37 16 2 O -0.32 -5.42 10.50 -19.70 -0.21 -5.63 16 3 C 0.09 1.54 6.69 -39.24 -0.26 1.28 16 4 C -0.17 -2.61 9.03 -39.45 -0.36 -2.97 16 5 C -0.18 -2.67 9.03 -39.45 -0.36 -3.03 16 6 C 0.10 1.55 6.66 -39.24 -0.26 1.29 16 7 O -0.32 -4.50 9.67 -19.68 -0.19 -4.69 16 8 C 0.03 0.30 9.81 101.05 0.99 1.29 16 9 C -0.03 -0.57 4.39 -104.49 -0.46 -1.03 16 10 C -0.07 -1.09 5.74 -91.74 -0.53 -1.61 16 11 H 0.12 1.55 7.76 -51.93 -0.40 1.14 16 12 C -0.15 -1.98 9.57 -26.73 -0.26 -2.23 16 13 C -0.18 -2.70 6.19 -91.74 -0.57 -3.27 16 14 H 0.12 1.54 8.14 -51.92 -0.42 1.12 16 15 C 0.52 10.65 7.43 -10.99 -0.08 10.56 16 16 O -0.53 -12.58 11.35 5.55 0.06 -12.52 16 17 N -0.71 -15.13 5.07 -54.93 -0.28 -15.41 16 18 C 0.27 6.94 2.56 -69.08 -0.18 6.76 16 19 H 0.05 1.44 7.58 -51.93 -0.39 1.04 16 20 C -0.15 -3.75 9.26 37.16 0.34 -3.40 16 21 C -0.53 -14.35 8.73 -34.44 -0.30 -14.66 16 22 H 0.06 1.58 7.74 -52.49 -0.41 1.18 16 23 C 0.07 1.80 5.30 -17.82 -0.09 1.70 16 24 N -0.88 -25.37 11.32 55.43 0.63 -24.74 16 25 Si 0.90 20.96 29.54 -169.99 -5.02 15.94 16 26 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 27 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 28 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 29 C -0.04 -0.64 6.10 -39.45 -0.24 -0.88 16 30 H 0.05 0.48 7.66 -51.93 -0.40 0.08 16 31 H 0.05 0.62 7.66 -51.93 -0.40 0.23 16 32 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.12 1.53 6.29 -52.49 -0.33 1.20 16 34 H 0.12 1.44 6.29 -52.49 -0.33 1.11 16 35 H 0.05 0.50 7.66 -51.93 -0.40 0.10 16 36 H 0.05 0.41 7.66 -51.93 -0.40 0.02 16 37 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.10 1.43 6.18 -51.93 -0.32 1.11 16 39 H 0.10 1.04 8.14 -51.93 -0.42 0.61 16 40 H 0.39 7.26 8.54 -40.82 -0.35 6.91 16 41 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 42 H 0.02 0.61 8.14 -51.93 -0.42 0.18 16 43 H 0.09 2.47 6.07 -51.93 -0.32 2.16 16 44 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 45 H 0.13 2.38 5.76 -52.49 -0.30 2.08 16 LS Contribution 365.10 15.07 5.50 5.50 Total: -1.00 -33.17 365.10 -7.53 -40.70 By element: Atomic # 1 Polarization: 16.07 SS G_CDS: -6.41 Total: 9.65 kcal Atomic # 6 Polarization: -7.19 SS G_CDS: -1.61 Total: -8.81 kcal Atomic # 7 Polarization: -40.50 SS G_CDS: 0.35 Total: -40.15 kcal Atomic # 8 Polarization: -22.50 SS G_CDS: -0.33 Total: -22.84 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -33.17 -7.53 -40.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188379767.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.230 kcal (2) G-P(sol) polarization free energy of solvation -33.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.700 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds