Wall clock time and date at job start Tue Mar 31 2020 12:55:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35982 * 117.00177 * 2 1 4 4 C 1.38718 * 119.99787 * 359.97438 * 3 2 1 5 5 C 1.38107 * 119.99977 * 179.97438 * 4 3 2 6 6 C 1.38715 * 120.00384 * 0.02562 * 5 4 3 7 7 O 1.35982 * 120.00575 * 179.97438 * 6 5 4 8 8 C 1.42900 * 116.99679 * 0.02562 * 7 6 5 9 9 C 1.38681 * 119.99806 * 0.02562 * 6 5 4 10 10 C 1.50701 * 120.00229 * 179.97438 * 9 6 5 11 11 H 1.08998 * 115.54957 * 25.66915 * 10 9 6 12 12 C 1.53074 * 117.49422 * 171.39831 * 10 9 6 13 13 C 1.53001 * 59.98553 * 107.48433 * 12 10 9 14 14 H 1.08999 * 117.49835 * 252.50373 * 13 12 10 15 15 C 1.50698 * 117.50007 * 107.49660 * 13 12 10 16 16 O 1.21283 * 120.00472 * 291.25886 * 15 13 12 17 17 N 1.34777 * 119.99538 * 111.25224 * 15 13 12 18 18 C 1.46499 * 119.99665 * 179.72653 * 17 15 13 19 19 H 1.08999 * 109.47228 * 325.27715 * 18 17 15 20 20 C 1.52999 * 109.47341 * 85.27876 * 18 17 15 21 21 C 1.50706 * 109.47303 * 205.27741 * 18 17 15 22 22 H 1.07998 * 119.99769 * 0.02562 * 21 18 17 23 23 C 1.37877 * 120.00286 * 179.97438 * 21 18 17 24 24 N 1.31515 * 119.99896 * 0.02562 * 23 21 18 25 25 Si 1.86797 * 119.99872 * 180.02562 * 23 21 18 26 26 H 1.48496 * 109.47221 * 60.00660 * 25 23 21 27 27 H 1.48504 * 109.46710 * 180.02562 * 25 23 21 28 28 H 1.48498 * 109.47441 * 300.00053 * 25 23 21 29 29 C 1.38156 * 119.99636 * 0.23127 * 9 6 5 30 30 H 1.09001 * 109.46771 * 60.00012 * 1 2 3 31 31 H 1.09003 * 109.46951 * 179.97438 * 1 2 3 32 32 H 1.08990 * 109.47173 * 299.99679 * 1 2 3 33 33 H 1.08004 * 120.00161 * 359.97438 * 4 3 2 34 34 H 1.08007 * 120.00300 * 179.97438 * 5 4 3 35 35 H 1.08991 * 109.47218 * 300.00068 * 8 7 6 36 36 H 1.09008 * 109.47028 * 59.99937 * 8 7 6 37 37 H 1.09003 * 109.46840 * 179.97438 * 8 7 6 38 38 H 1.09000 * 117.49347 * 359.97438 * 12 10 9 39 39 H 1.09001 * 117.51171 * 214.96323 * 12 10 9 40 40 H 0.97001 * 120.00485 * 0.02562 * 17 15 13 41 41 H 1.08999 * 109.47091 * 59.99755 * 20 18 17 42 42 H 1.08996 * 109.47098 * 180.02562 * 20 18 17 43 43 H 1.09001 * 109.46823 * 300.00095 * 20 18 17 44 44 H 0.96999 * 119.99952 * 179.97438 * 24 23 21 45 45 H 1.08003 * 119.99906 * 179.72565 * 29 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2116 0.0000 4 6 1.2908 2.3750 -0.0005 5 6 1.9178 3.6055 0.0000 6 6 3.3031 3.6782 0.0005 7 8 3.9205 4.8898 0.0005 8 6 3.0805 6.0459 0.0005 9 6 4.0584 2.5152 0.0000 10 6 5.5634 2.5940 0.0000 11 1 5.9865 3.5036 0.4264 12 6 6.3394 1.2902 0.2025 13 6 6.3043 1.9538 -1.1756 14 1 5.7032 1.4760 -1.9492 15 6 7.5635 2.6288 -1.6551 16 8 7.9528 3.6416 -1.1132 17 7 8.2571 2.1069 -2.6861 18 6 9.4779 2.7664 -3.1561 19 1 9.3684 3.8464 -3.0578 20 6 10.6673 2.2959 -2.3167 21 6 9.7137 2.4151 -4.6026 22 1 9.0230 1.7659 -5.1201 23 6 10.8106 2.9234 -5.2656 24 7 11.6514 3.7144 -4.6355 25 14 11.1023 2.4885 -7.0586 26 1 9.9477 2.9453 -7.8730 27 1 12.3399 3.1569 -7.5350 28 1 11.2518 1.0172 -7.1932 29 6 3.4312 1.2842 -0.0059 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5137 0.8899 33 1 0.2123 2.3185 -0.0014 34 1 1.3296 4.5114 -0.0008 35 1 2.4513 6.0378 -0.8894 36 1 2.4512 6.0377 0.8906 37 1 3.6984 6.9439 0.0010 38 1 5.7610 0.3760 0.3360 39 1 7.2732 1.3417 0.7623 40 1 7.9457 1.2971 -3.1198 41 1 10.7769 1.2159 -2.4151 42 1 11.5755 2.7869 -2.6661 43 1 10.4968 2.5500 -1.2705 44 1 12.4233 4.0716 -5.1018 45 1 4.0194 0.3784 -0.0108 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000188379809.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:55:32 Heat of formation + Delta-G solvation = -61.787136 kcal Electronic energy + Delta-G solvation = -26293.087748 eV Core-core repulsion = 22470.344163 eV Total energy + Delta-G solvation = -3822.743584 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.78886 -39.27895 -38.99103 -37.13324 -35.67521 -34.54587 -32.28391 -31.05801 -29.95858 -28.90421 -27.56672 -27.04281 -25.21932 -24.27041 -23.71240 -22.00727 -20.89271 -20.24486 -19.20585 -18.37427 -17.67345 -17.30849 -16.74963 -16.02990 -15.79529 -15.66561 -15.22599 -14.92057 -14.62226 -14.60216 -14.36784 -13.73005 -13.69788 -13.19435 -12.99150 -12.96098 -12.48876 -12.33508 -12.00579 -11.98322 -11.82601 -11.64832 -11.41372 -11.11600 -10.96376 -10.92066 -10.79015 -10.68692 -10.43922 -10.28659 -10.18667 -10.17804 -9.06481 -9.00420 -8.78281 -8.49815 -7.83335 -7.80005 -6.07809 -4.16885 1.01913 1.31338 3.03660 3.19849 3.26972 3.28694 3.33503 3.35162 3.53258 4.06976 4.24520 4.38544 4.49903 4.57432 4.77177 4.85122 4.86357 4.92978 5.01804 5.04636 5.13654 5.17486 5.18642 5.24305 5.26703 5.38487 5.39706 5.60210 5.68677 5.84896 5.88362 6.08826 6.14279 6.19433 6.35256 6.53925 6.88625 7.02912 7.11112 7.21126 7.36084 7.53801 7.63282 7.75556 7.97859 8.20430 8.75718 8.84291 9.23044 9.50896 10.98194 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.016259 B = 0.002698 C = 0.002572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1721.738917 B =10376.583842 C =10884.900896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.318 6.318 3 C 0.092 3.908 4 C -0.174 4.174 5 C -0.169 4.169 6 C 0.105 3.895 7 O -0.304 6.304 8 C 0.028 3.972 9 C -0.038 4.038 10 C -0.079 4.079 11 H 0.133 0.867 12 C -0.148 4.148 13 C -0.170 4.170 14 H 0.119 0.881 15 C 0.530 3.470 16 O -0.553 6.553 17 N -0.705 5.705 18 C 0.264 3.736 19 H 0.048 0.952 20 C -0.146 4.146 21 C -0.533 4.533 22 H 0.060 0.940 23 C 0.066 3.934 24 N -0.884 5.884 25 Si 0.902 3.098 26 H -0.276 1.276 27 H -0.286 1.286 28 H -0.276 1.276 29 C -0.114 4.114 30 H 0.053 0.947 31 H 0.098 0.902 32 H 0.053 0.947 33 H 0.128 0.872 34 H 0.131 0.869 35 H 0.053 0.947 36 H 0.052 0.948 37 H 0.101 0.899 38 H 0.104 0.896 39 H 0.104 0.896 40 H 0.389 0.611 41 H 0.026 0.974 42 H 0.089 0.911 43 H 0.014 0.986 44 H 0.264 0.736 45 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.123 -4.128 10.793 25.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.232 6.232 3 C 0.047 3.953 4 C -0.193 4.193 5 C -0.188 4.188 6 C 0.059 3.941 7 O -0.217 6.217 8 C -0.068 4.068 9 C -0.039 4.039 10 C -0.098 4.098 11 H 0.150 0.850 12 C -0.186 4.186 13 C -0.191 4.191 14 H 0.137 0.863 15 C 0.314 3.686 16 O -0.432 6.432 17 N -0.352 5.352 18 C 0.163 3.837 19 H 0.066 0.934 20 C -0.205 4.205 21 C -0.572 4.572 22 H 0.079 0.921 23 C -0.137 4.137 24 N -0.522 5.522 25 Si 0.729 3.271 26 H -0.202 1.202 27 H -0.212 1.212 28 H -0.202 1.202 29 C -0.132 4.132 30 H 0.072 0.928 31 H 0.116 0.884 32 H 0.071 0.929 33 H 0.146 0.854 34 H 0.149 0.851 35 H 0.071 0.929 36 H 0.070 0.930 37 H 0.119 0.881 38 H 0.122 0.878 39 H 0.123 0.877 40 H 0.221 0.779 41 H 0.045 0.955 42 H 0.108 0.892 43 H 0.033 0.967 44 H 0.074 0.926 45 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -22.332 -3.416 11.116 25.179 hybrid contribution -0.613 -0.337 -1.324 1.498 sum -22.945 -3.754 9.792 25.228 Atomic orbital electron populations 1.23011 0.78721 1.03782 1.01129 1.86076 1.21037 1.26708 1.89367 1.18785 0.92051 0.84160 1.00296 1.20961 0.99795 0.91685 1.06864 1.20975 0.93064 0.98396 1.06379 1.18687 0.90492 0.85551 0.99344 1.86214 1.34972 1.11896 1.88655 1.23051 0.95926 0.86990 1.00806 1.18300 0.93698 0.89743 1.02127 1.20839 0.88322 0.98983 1.01615 0.84965 1.23121 1.02467 0.95998 0.96978 1.22474 0.98805 1.04750 0.93060 0.86298 1.19438 0.83725 0.84517 0.80877 1.90648 1.70027 1.25090 1.57424 1.46443 1.27581 1.28772 1.32432 1.18732 0.78666 0.93932 0.92395 0.93419 1.22070 1.02799 0.99139 0.96481 1.21203 1.09734 1.31073 0.95162 0.92136 1.24890 0.95609 0.94727 0.98513 1.69898 1.13730 1.31971 1.36572 0.86507 0.77602 0.78575 0.84396 1.20195 1.21151 1.20165 1.20139 0.91265 0.97658 1.04132 0.92822 0.88361 0.92870 0.85384 0.85139 0.92857 0.92991 0.88103 0.87801 0.87723 0.77883 0.95476 0.89203 0.96671 0.92560 0.84177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 9.81 101.05 0.99 1.17 16 2 O -0.32 -3.31 10.50 -19.68 -0.21 -3.51 16 3 C 0.09 1.04 6.69 -39.24 -0.26 0.77 16 4 C -0.17 -1.74 9.03 -39.45 -0.36 -2.09 16 5 C -0.17 -1.80 9.03 -39.45 -0.36 -2.15 16 6 C 0.10 1.38 6.66 -39.24 -0.26 1.12 16 7 O -0.30 -4.19 9.67 -19.68 -0.19 -4.38 16 8 C 0.03 0.25 9.81 101.05 0.99 1.24 16 9 C -0.04 -0.51 5.62 -104.49 -0.59 -1.10 16 10 C -0.08 -1.19 5.26 -91.73 -0.48 -1.67 16 11 H 0.13 2.29 7.29 -51.93 -0.38 1.91 16 12 C -0.15 -1.96 9.56 -26.69 -0.26 -2.22 16 13 C -0.17 -2.69 5.82 -91.77 -0.53 -3.23 16 14 H 0.12 1.67 8.14 -51.93 -0.42 1.25 16 15 C 0.53 11.17 7.58 -10.99 -0.08 11.09 16 16 O -0.55 -13.84 15.92 5.55 0.09 -13.75 16 17 N -0.71 -15.39 5.07 -54.93 -0.28 -15.67 16 18 C 0.26 6.95 2.56 -69.08 -0.18 6.78 16 19 H 0.05 1.45 7.57 -51.93 -0.39 1.05 16 20 C -0.15 -3.74 9.26 37.16 0.34 -3.40 16 21 C -0.53 -14.49 8.73 -34.44 -0.30 -14.79 16 22 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 23 C 0.07 1.80 5.30 -17.82 -0.09 1.71 16 24 N -0.88 -25.38 11.32 55.43 0.63 -24.75 16 25 Si 0.90 20.99 29.54 -169.99 -5.02 15.97 16 26 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 27 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 28 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 29 C -0.11 -1.37 9.23 -39.45 -0.36 -1.73 16 30 H 0.05 0.29 7.66 -51.93 -0.40 -0.11 16 31 H 0.10 0.43 8.14 -51.93 -0.42 0.00 16 32 H 0.05 0.27 7.66 -51.93 -0.40 -0.12 16 33 H 0.13 0.93 6.29 -52.48 -0.33 0.60 16 34 H 0.13 1.06 6.29 -52.48 -0.33 0.73 16 35 H 0.05 0.42 7.66 -51.93 -0.40 0.02 16 36 H 0.05 0.37 7.66 -51.92 -0.40 -0.02 16 37 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.10 1.09 6.18 -51.93 -0.32 0.77 16 39 H 0.10 1.44 8.14 -51.93 -0.42 1.01 16 40 H 0.39 7.38 8.54 -40.82 -0.35 7.03 16 41 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.09 2.48 6.07 -51.93 -0.32 2.17 16 43 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 44 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 45 H 0.14 1.51 6.03 -52.48 -0.32 1.20 16 LS Contribution 373.10 15.07 5.62 5.62 Total: -1.00 -33.48 373.10 -7.55 -41.03 By element: Atomic # 1 Polarization: 14.36 SS G_CDS: -6.40 Total: 7.96 kcal Atomic # 6 Polarization: -6.73 SS G_CDS: -1.79 Total: -8.51 kcal Atomic # 7 Polarization: -40.76 SS G_CDS: 0.35 Total: -40.42 kcal Atomic # 8 Polarization: -21.34 SS G_CDS: -0.31 Total: -21.65 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -33.48 -7.55 -41.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188379809.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.757 kcal (2) G-P(sol) polarization free energy of solvation -33.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds