Wall clock time and date at job start Tue Mar 31 2020 12:55:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35982 * 117.00177 * 2 1 4 4 C 1.38718 * 119.99787 * 359.97438 * 3 2 1 5 5 C 1.38107 * 119.99977 * 179.97438 * 4 3 2 6 6 C 1.38715 * 120.00384 * 0.02562 * 5 4 3 7 7 O 1.35982 * 120.00575 * 179.97438 * 6 5 4 8 8 C 1.42900 * 116.99679 * 0.02562 * 7 6 5 9 9 C 1.38681 * 119.99806 * 0.02562 * 6 5 4 10 10 C 1.50701 * 120.00229 * 179.97438 * 9 6 5 11 11 H 1.08998 * 115.54957 * 25.66915 * 10 9 6 12 12 C 1.53074 * 117.49422 * 171.39831 * 10 9 6 13 13 C 1.53001 * 59.98553 * 107.48433 * 12 10 9 14 14 H 1.08999 * 117.49835 * 252.50373 * 13 12 10 15 15 C 1.50698 * 117.50007 * 107.49660 * 13 12 10 16 16 O 1.21283 * 120.00472 * 291.25886 * 15 13 12 17 17 N 1.34777 * 119.99538 * 111.25224 * 15 13 12 18 18 C 1.46499 * 119.99665 * 179.72653 * 17 15 13 19 19 H 1.08999 * 109.47228 * 325.27715 * 18 17 15 20 20 C 1.52999 * 109.47341 * 85.27876 * 18 17 15 21 21 C 1.50706 * 109.47303 * 205.27741 * 18 17 15 22 22 H 1.07998 * 119.99769 * 0.02562 * 21 18 17 23 23 C 1.37877 * 120.00286 * 179.97438 * 21 18 17 24 24 N 1.31515 * 119.99896 * 0.02562 * 23 21 18 25 25 Si 1.86797 * 119.99872 * 180.02562 * 23 21 18 26 26 H 1.48496 * 109.47221 * 60.00660 * 25 23 21 27 27 H 1.48504 * 109.46710 * 180.02562 * 25 23 21 28 28 H 1.48498 * 109.47441 * 300.00053 * 25 23 21 29 29 C 1.38156 * 119.99636 * 0.23127 * 9 6 5 30 30 H 1.09001 * 109.46771 * 60.00012 * 1 2 3 31 31 H 1.09003 * 109.46951 * 179.97438 * 1 2 3 32 32 H 1.08990 * 109.47173 * 299.99679 * 1 2 3 33 33 H 1.08004 * 120.00161 * 359.97438 * 4 3 2 34 34 H 1.08007 * 120.00300 * 179.97438 * 5 4 3 35 35 H 1.08991 * 109.47218 * 300.00068 * 8 7 6 36 36 H 1.09008 * 109.47028 * 59.99937 * 8 7 6 37 37 H 1.09003 * 109.46840 * 179.97438 * 8 7 6 38 38 H 1.09000 * 117.49347 * 359.97438 * 12 10 9 39 39 H 1.09001 * 117.51171 * 214.96323 * 12 10 9 40 40 H 0.97001 * 120.00485 * 0.02562 * 17 15 13 41 41 H 1.08999 * 109.47091 * 59.99755 * 20 18 17 42 42 H 1.08996 * 109.47098 * 180.02562 * 20 18 17 43 43 H 1.09001 * 109.46823 * 300.00095 * 20 18 17 44 44 H 0.96999 * 119.99952 * 179.97438 * 24 23 21 45 45 H 1.08003 * 119.99906 * 179.72565 * 29 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2116 0.0000 4 6 1.2908 2.3750 -0.0005 5 6 1.9178 3.6055 0.0000 6 6 3.3031 3.6782 0.0005 7 8 3.9205 4.8898 0.0005 8 6 3.0805 6.0459 0.0005 9 6 4.0584 2.5152 0.0000 10 6 5.5634 2.5940 0.0000 11 1 5.9865 3.5036 0.4264 12 6 6.3394 1.2902 0.2025 13 6 6.3043 1.9538 -1.1756 14 1 5.7032 1.4760 -1.9492 15 6 7.5635 2.6288 -1.6551 16 8 7.9528 3.6416 -1.1132 17 7 8.2571 2.1069 -2.6861 18 6 9.4779 2.7664 -3.1561 19 1 9.3684 3.8464 -3.0578 20 6 10.6673 2.2959 -2.3167 21 6 9.7137 2.4151 -4.6026 22 1 9.0230 1.7659 -5.1201 23 6 10.8106 2.9234 -5.2656 24 7 11.6514 3.7144 -4.6355 25 14 11.1023 2.4885 -7.0586 26 1 9.9477 2.9453 -7.8730 27 1 12.3399 3.1569 -7.5350 28 1 11.2518 1.0172 -7.1932 29 6 3.4312 1.2842 -0.0059 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5137 0.8899 33 1 0.2123 2.3185 -0.0014 34 1 1.3296 4.5114 -0.0008 35 1 2.4513 6.0378 -0.8894 36 1 2.4512 6.0377 0.8906 37 1 3.6984 6.9439 0.0010 38 1 5.7610 0.3760 0.3360 39 1 7.2732 1.3417 0.7623 40 1 7.9457 1.2971 -3.1198 41 1 10.7769 1.2159 -2.4151 42 1 11.5755 2.7869 -2.6661 43 1 10.4968 2.5500 -1.2705 44 1 12.4233 4.0716 -5.1018 45 1 4.0194 0.3784 -0.0108 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000188379809.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:55:31 Heat of formation + Delta-G solvation = -83.884895 kcal Electronic energy + Delta-G solvation = -26294.045979 eV Core-core repulsion = 22470.344163 eV Total energy + Delta-G solvation = -3823.701815 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.69151 -40.72280 -39.86604 -38.33660 -36.87661 -36.31172 -34.29965 -31.99263 -30.94247 -30.65272 -28.21556 -27.72278 -27.35476 -25.63031 -24.79915 -22.86268 -22.56314 -21.43197 -20.94323 -19.29944 -18.90869 -18.43998 -17.84478 -17.40517 -17.15856 -16.74756 -16.38640 -16.15479 -15.94048 -15.66573 -15.44091 -15.22344 -15.09771 -14.47365 -14.35257 -13.72618 -13.71017 -13.67828 -13.43353 -13.06081 -13.01482 -12.87336 -12.83537 -12.73912 -12.46428 -12.28729 -12.26261 -12.17040 -11.83282 -11.77521 -11.36461 -11.24121 -11.12654 -10.74555 -10.57549 -9.80335 -9.73841 -8.66026 -8.17715 -6.35838 0.16601 0.45997 1.44348 1.47130 1.54885 1.67433 2.32297 2.37121 2.49600 2.52063 2.67347 3.05230 3.12474 3.54306 3.72655 3.79536 3.94471 4.00976 4.21489 4.27051 4.29239 4.31338 4.39568 4.39970 4.46443 4.51912 4.70903 4.72933 4.78217 4.78630 4.80073 4.91825 4.94674 5.07014 5.09242 5.27042 5.29001 5.36518 5.42962 5.60333 5.60857 5.68874 5.90894 6.09253 6.38245 6.57037 6.71673 6.97606 7.31668 7.56432 8.88618 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.016259 B = 0.002698 C = 0.002572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1721.738917 B =10376.583842 C =10884.900896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.333 6.333 3 C 0.087 3.913 4 C -0.167 4.167 5 C -0.166 4.166 6 C 0.081 3.919 7 O -0.340 6.340 8 C 0.019 3.981 9 C -0.058 4.058 10 C -0.078 4.078 11 H 0.099 0.901 12 C -0.122 4.122 13 C -0.176 4.176 14 H 0.143 0.857 15 C 0.525 3.475 16 O -0.601 6.601 17 N -0.701 5.701 18 C 0.270 3.730 19 H -0.005 1.005 20 C -0.132 4.132 21 C -0.549 4.549 22 H 0.073 0.927 23 C 0.013 3.987 24 N -0.918 5.918 25 Si 0.975 3.025 26 H -0.271 1.271 27 H -0.285 1.285 28 H -0.262 1.262 29 C -0.119 4.119 30 H 0.063 0.937 31 H 0.116 0.884 32 H 0.065 0.935 33 H 0.159 0.841 34 H 0.156 0.844 35 H 0.065 0.935 36 H 0.072 0.928 37 H 0.104 0.896 38 H 0.141 0.859 39 H 0.097 0.903 40 H 0.406 0.594 41 H 0.042 0.958 42 H 0.067 0.933 43 H 0.011 0.989 44 H 0.266 0.734 45 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.002 -6.243 10.195 28.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.248 6.248 3 C 0.042 3.958 4 C -0.186 4.186 5 C -0.184 4.184 6 C 0.036 3.964 7 O -0.254 6.254 8 C -0.075 4.075 9 C -0.059 4.059 10 C -0.097 4.097 11 H 0.117 0.883 12 C -0.159 4.159 13 C -0.197 4.197 14 H 0.161 0.839 15 C 0.313 3.687 16 O -0.483 6.483 17 N -0.349 5.349 18 C 0.167 3.833 19 H 0.013 0.987 20 C -0.191 4.191 21 C -0.587 4.587 22 H 0.091 0.909 23 C -0.187 4.187 24 N -0.557 5.557 25 Si 0.799 3.201 26 H -0.196 1.196 27 H -0.211 1.211 28 H -0.187 1.187 29 C -0.137 4.137 30 H 0.082 0.918 31 H 0.135 0.865 32 H 0.084 0.916 33 H 0.176 0.824 34 H 0.173 0.827 35 H 0.084 0.916 36 H 0.091 0.909 37 H 0.122 0.878 38 H 0.159 0.841 39 H 0.116 0.884 40 H 0.241 0.759 41 H 0.061 0.939 42 H 0.086 0.914 43 H 0.030 0.970 44 H 0.075 0.925 45 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -25.253 -5.569 10.522 27.918 hybrid contribution 0.176 0.371 -1.067 1.143 sum -25.077 -5.197 9.455 27.299 Atomic orbital electron populations 1.23328 0.76604 1.05499 1.02194 1.86060 1.23258 1.26255 1.89188 1.18904 0.92003 0.85035 0.99888 1.21319 1.01320 0.90878 1.05057 1.21254 0.92119 0.99826 1.05215 1.18985 0.91706 0.85285 1.00395 1.86167 1.37086 1.13147 1.89017 1.23293 0.96125 0.85756 1.02358 1.18250 0.92493 0.90862 1.04256 1.20659 0.89854 0.98572 1.00639 0.88308 1.23264 1.02117 0.96631 0.93860 1.22344 0.96599 1.06071 0.94730 0.83900 1.20305 0.84796 0.83866 0.79780 1.90621 1.71591 1.27328 1.58768 1.46216 1.26587 1.29198 1.32899 1.18350 0.80613 0.91364 0.93002 0.98742 1.21885 1.01608 0.99670 0.95943 1.21526 1.10218 1.31419 0.95565 0.90857 1.25841 0.95238 0.94376 1.03226 1.70055 1.14204 1.32890 1.38502 0.85358 0.77409 0.78875 0.78455 1.19595 1.21059 1.18705 1.20217 0.92096 0.97265 1.04109 0.91839 0.86532 0.91603 0.82369 0.82696 0.91636 0.90944 0.87755 0.84110 0.88449 0.75941 0.93913 0.91436 0.97015 0.92494 0.83144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.81 113.37 1.11 1.28 16 2 O -0.33 -5.96 10.50 -93.35 -0.98 -6.94 16 3 C 0.09 1.74 6.69 22.49 0.15 1.89 16 4 C -0.17 -2.83 9.03 22.35 0.20 -2.62 16 5 C -0.17 -3.16 9.03 22.35 0.20 -2.96 16 6 C 0.08 2.11 6.66 22.49 0.15 2.26 16 7 O -0.34 -9.63 9.67 -93.35 -0.90 -10.53 16 8 C 0.02 0.34 9.81 113.37 1.11 1.45 16 9 C -0.06 -1.54 5.62 -19.78 -0.11 -1.65 16 10 C -0.08 -2.41 5.26 -11.51 -0.06 -2.47 16 11 H 0.10 3.69 7.29 -2.39 -0.02 3.68 16 12 C -0.12 -3.10 9.56 30.62 0.29 -2.81 16 13 C -0.18 -5.58 5.82 -11.54 -0.07 -5.64 16 14 H 0.14 3.81 8.14 -2.39 -0.02 3.79 16 15 C 0.53 22.88 7.58 87.66 0.66 23.55 16 16 O -0.60 -31.94 15.92 -3.04 -0.05 -31.99 16 17 N -0.70 -31.16 5.07 -446.09 -2.26 -33.42 16 18 C 0.27 14.72 2.56 44.25 0.11 14.83 16 19 H -0.01 -0.34 7.57 -2.39 -0.02 -0.36 16 20 C -0.13 -6.99 9.26 71.98 0.67 -6.32 16 21 C -0.55 -30.08 8.73 25.60 0.22 -29.86 16 22 H 0.07 3.74 7.74 -2.91 -0.02 3.71 16 23 C 0.01 0.72 5.30 84.65 0.45 1.17 16 24 N -0.92 -54.02 11.32 21.45 0.24 -53.77 16 25 Si 0.97 42.82 29.54 68.60 2.03 44.85 16 26 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 27 H -0.29 -12.39 7.11 99.48 0.71 -11.68 16 28 H -0.26 -10.90 7.11 99.48 0.71 -10.20 16 29 C -0.12 -2.65 9.23 22.35 0.21 -2.44 16 30 H 0.06 0.46 7.66 -2.39 -0.02 0.44 16 31 H 0.12 0.61 8.14 -2.39 -0.02 0.59 16 32 H 0.07 0.44 7.66 -2.39 -0.02 0.42 16 33 H 0.16 1.63 6.29 -2.91 -0.02 1.61 16 34 H 0.16 2.06 6.29 -2.91 -0.02 2.05 16 35 H 0.07 0.97 7.66 -2.39 -0.02 0.95 16 36 H 0.07 0.95 7.66 -2.38 -0.02 0.93 16 37 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 38 H 0.14 2.54 6.18 -2.39 -0.01 2.53 16 39 H 0.10 2.64 8.14 -2.39 -0.02 2.62 16 40 H 0.41 15.17 8.54 -92.71 -0.79 14.38 16 41 H 0.04 2.06 8.14 -2.39 -0.02 2.04 16 42 H 0.07 3.87 6.07 -2.39 -0.01 3.85 16 43 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 44 H 0.27 14.77 8.31 -92.71 -0.77 14.00 16 45 H 0.15 2.86 6.03 -2.91 -0.02 2.85 16 Total: -1.00 -76.24 373.10 3.61 -72.63 By element: Atomic # 1 Polarization: 29.31 SS G_CDS: 0.23 Total: 29.54 kcal Atomic # 6 Polarization: -15.65 SS G_CDS: 5.31 Total: -10.35 kcal Atomic # 7 Polarization: -85.17 SS G_CDS: -2.02 Total: -87.19 kcal Atomic # 8 Polarization: -47.54 SS G_CDS: -1.93 Total: -49.47 kcal Atomic # 14 Polarization: 42.82 SS G_CDS: 2.03 Total: 44.85 kcal Total: -76.24 3.61 -72.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188379809.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.258 kcal (2) G-P(sol) polarization free energy of solvation -76.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.627 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds