Wall clock time and date at job start Tue Mar 31 2020 13:08:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42899 * 114.00193 * 2 1 4 4 C 1.52997 * 109.47136 * 180.02562 * 3 2 1 5 5 H 1.09009 * 109.47101 * 186.06748 * 4 3 2 6 6 C 1.52993 * 109.47326 * 306.06916 * 4 3 2 7 7 N 1.46509 * 109.47325 * 66.07146 * 4 3 2 8 8 C 1.46498 * 119.99577 * 293.74470 * 7 4 3 9 9 C 1.34776 * 120.00024 * 113.75003 * 7 4 3 10 10 O 1.21724 * 120.00143 * 359.97438 * 9 7 4 11 11 C 1.46254 * 119.99609 * 180.02562 * 9 7 4 12 12 C 1.35018 * 119.99637 * 179.97438 * 11 9 7 13 13 C 1.46966 * 120.00059 * 179.97438 * 12 11 9 14 14 C 1.40024 * 120.10400 * 180.02562 * 13 12 11 15 15 C 1.37593 * 119.89780 * 179.97438 * 14 13 12 16 16 C 1.39179 * 120.10287 * 0.24844 * 15 14 13 17 17 O 1.35569 * 119.89808 * 179.74426 * 16 15 14 18 18 C 1.34780 * 117.00101 * 354.46460 * 17 16 15 19 19 H 1.07999 * 120.00303 * 5.05130 * 18 17 16 20 20 C 1.38722 * 119.99623 * 185.04451 * 18 17 16 21 21 N 1.31515 * 119.99528 * 180.02562 * 20 18 17 22 22 Si 1.86797 * 120.00407 * 0.02562 * 20 18 17 23 23 H 1.48497 * 109.46932 * 89.99688 * 22 20 18 24 24 H 1.48496 * 109.47032 * 209.99432 * 22 20 18 25 25 H 1.48493 * 109.47096 * 329.99854 * 22 20 18 26 26 C 1.39178 * 120.20157 * 359.49533 * 16 15 14 27 27 C 1.37597 * 120.10048 * 0.50977 * 26 16 15 28 28 H 1.08997 * 109.47183 * 300.00010 * 1 2 3 29 29 H 1.08996 * 109.47138 * 60.00368 * 1 2 3 30 30 H 1.09005 * 109.47017 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47024 * 60.00185 * 3 2 1 32 32 H 1.09006 * 109.46939 * 299.99627 * 3 2 1 33 33 H 1.08995 * 109.47145 * 59.99822 * 6 4 3 34 34 H 1.09001 * 109.47677 * 180.02562 * 6 4 3 35 35 H 1.09001 * 109.47252 * 299.99981 * 6 4 3 36 36 H 1.09001 * 109.47530 * 274.57470 * 8 7 4 37 37 H 1.09004 * 109.47020 * 34.57254 * 8 7 4 38 38 H 1.09005 * 109.46827 * 154.56726 * 8 7 4 39 39 H 1.07997 * 120.00144 * 359.97438 * 11 9 7 40 40 H 1.08003 * 120.00651 * 0.02562 * 12 11 9 41 41 H 1.08002 * 120.04999 * 359.95895 * 14 13 12 42 42 H 1.07998 * 119.95207 * 179.97438 * 15 14 13 43 43 H 0.96998 * 119.99780 * 180.02562 * 21 20 18 44 44 H 1.07997 * 119.95048 * 180.24908 * 26 16 15 45 45 H 1.08000 * 120.05360 * 179.77162 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 1 3.9784 2.1747 0.1080 6 6 3.9773 0.2975 1.1649 7 7 3.9776 0.5877 -1.2635 8 6 3.6292 -0.7997 -1.5794 9 6 4.7048 1.3151 -2.1345 10 8 4.9938 2.4680 -1.8721 11 6 5.1456 0.7194 -3.3953 12 6 5.8737 1.4482 -4.2681 13 6 6.3171 0.8495 -5.5349 14 6 7.0728 1.6032 -6.4414 15 6 7.4862 1.0382 -7.6259 16 6 7.1501 -0.2786 -7.9260 17 8 7.5552 -0.8294 -9.0966 18 6 8.1790 -0.0163 -9.9720 19 1 8.4087 1.0018 -9.6942 20 6 8.5261 -0.4871 -11.2299 21 7 9.1352 0.3062 -12.0839 22 14 8.1284 -2.2478 -11.7107 23 1 6.7825 -2.2981 -12.3362 24 1 9.1425 -2.7377 -12.6785 25 1 8.1439 -3.1071 -10.4998 26 6 6.4037 -1.0333 -7.0258 27 6 5.9858 -0.4767 -5.8388 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.6887 1.8463 0.8900 32 1 1.6887 1.8463 -0.8901 33 1 3.5343 -0.6925 1.0563 34 1 5.0639 0.2117 1.1648 35 1 3.6484 0.7415 2.1045 36 1 4.3647 -1.4695 -1.1338 37 1 2.6413 -1.0266 -1.1785 38 1 3.6224 -0.9354 -2.6609 39 1 4.8887 -0.3034 -3.6283 40 1 6.1309 2.4709 -4.0350 41 1 7.3304 2.6264 -6.2112 42 1 8.0687 1.6189 -8.3259 43 1 9.3776 -0.0229 -12.9635 44 1 6.1486 -2.0560 -7.2610 45 1 5.4035 -1.0618 -5.1424 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000193609366.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:08:16 Heat of formation + Delta-G solvation = -59.631118 kcal Electronic energy + Delta-G solvation = -25586.381847 eV Core-core repulsion = 21763.731755 eV Total energy + Delta-G solvation = -3822.650092 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.12671 -39.32643 -38.28861 -37.05109 -35.78711 -33.38629 -32.54292 -31.88392 -30.51662 -28.36271 -27.70761 -27.08786 -25.82031 -25.58910 -23.66427 -22.29816 -21.39500 -19.91267 -18.70518 -18.00536 -17.58777 -17.33742 -16.57327 -16.46023 -16.11176 -15.41626 -14.96932 -14.88231 -14.67020 -14.12012 -13.99380 -13.96699 -13.61237 -13.37275 -13.10047 -12.84413 -12.78199 -12.70226 -12.45132 -12.37016 -12.29782 -12.06127 -11.87048 -11.65481 -11.37782 -11.32363 -11.15595 -11.01538 -10.74345 -10.26955 -10.08224 -9.65654 -9.63178 -9.53941 -8.93008 -8.68602 -8.45934 -7.22637 -6.59597 -4.23361 1.00513 2.04420 2.47998 2.96451 3.12278 3.16138 3.29493 3.35916 3.57188 4.09471 4.44015 4.48597 4.64079 4.71379 4.83072 4.90827 4.94678 4.97913 5.02813 5.09337 5.16141 5.22309 5.28266 5.29109 5.42501 5.45098 5.51429 5.56603 5.61247 5.74601 5.88597 5.95431 5.99951 6.04748 6.30840 6.33307 6.53080 6.57486 6.68946 6.73909 6.94243 7.10016 7.17542 7.42738 7.42861 7.63683 7.85037 8.28496 8.73753 9.34186 10.46693 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.027263 B = 0.002074 C = 0.001989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1026.796769 B =13494.358126 C =14076.206234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.384 6.384 3 C 0.051 3.949 4 C 0.140 3.860 5 H 0.111 0.889 6 C -0.156 4.156 7 N -0.609 5.609 8 C 0.071 3.929 9 C 0.555 3.445 10 O -0.562 6.562 11 C -0.277 4.277 12 C 0.034 3.966 13 C -0.188 4.188 14 C -0.037 4.037 15 C -0.230 4.230 16 C 0.173 3.827 17 O -0.203 6.203 18 C -0.392 4.392 19 H 0.111 0.889 20 C 0.065 3.935 21 N -0.867 5.867 22 Si 0.907 3.093 23 H -0.271 1.271 24 H -0.280 1.280 25 H -0.258 1.258 26 C -0.199 4.199 27 C -0.045 4.045 28 H 0.040 0.960 29 H 0.041 0.959 30 H 0.085 0.915 31 H 0.058 0.942 32 H 0.054 0.946 33 H 0.069 0.931 34 H 0.058 0.942 35 H 0.063 0.937 36 H 0.050 0.950 37 H 0.092 0.908 38 H 0.072 0.928 39 H 0.127 0.873 40 H 0.124 0.876 41 H 0.117 0.883 42 H 0.137 0.863 43 H 0.283 0.717 44 H 0.121 0.879 45 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.016 -1.954 22.350 26.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.303 6.303 3 C -0.026 4.026 4 C 0.036 3.964 5 H 0.129 0.871 6 C -0.214 4.214 7 N -0.342 5.342 8 C -0.072 4.072 9 C 0.349 3.651 10 O -0.443 6.443 11 C -0.298 4.298 12 C 0.014 3.986 13 C -0.189 4.189 14 C -0.056 4.056 15 C -0.249 4.249 16 C 0.119 3.881 17 O -0.106 6.106 18 C -0.466 4.466 19 H 0.128 0.872 20 C -0.140 4.140 21 N -0.503 5.503 22 Si 0.732 3.268 23 H -0.197 1.197 24 H -0.205 1.205 25 H -0.182 1.182 26 C -0.218 4.218 27 C -0.064 4.064 28 H 0.058 0.942 29 H 0.059 0.941 30 H 0.104 0.896 31 H 0.077 0.923 32 H 0.072 0.928 33 H 0.088 0.912 34 H 0.077 0.923 35 H 0.082 0.918 36 H 0.068 0.932 37 H 0.110 0.890 38 H 0.091 0.909 39 H 0.145 0.855 40 H 0.142 0.858 41 H 0.135 0.865 42 H 0.155 0.845 43 H 0.093 0.907 44 H 0.139 0.861 45 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -13.657 -1.746 22.133 26.066 hybrid contribution -0.318 -0.416 -0.423 0.673 sum -13.974 -2.162 21.710 25.909 Atomic orbital electron populations 1.22750 0.81276 1.02735 0.99982 1.87853 1.19513 1.27710 1.95216 1.23017 0.93860 0.85005 1.00726 1.21104 0.91621 0.99438 0.84194 0.87083 1.22014 1.01575 1.00896 0.96877 1.47683 1.54010 1.13771 1.18690 1.22042 1.02193 0.81277 1.01684 1.18480 0.77064 0.85338 0.84227 1.90754 1.57867 1.17826 1.77821 1.22581 1.09477 1.01891 0.95855 1.22319 0.88067 0.98121 0.90097 1.18533 1.08742 0.95330 0.96312 1.21041 0.93840 0.98283 0.92395 1.21221 1.07884 0.96316 0.99453 1.19362 0.91013 0.91396 0.86349 1.83503 1.65009 1.38691 1.23355 1.20875 1.35879 0.96451 0.93440 0.87204 1.24545 0.95297 0.99992 0.94145 1.69620 1.37176 1.36381 1.07126 0.86151 0.78561 0.82932 0.79153 1.19651 1.20533 1.18203 1.20140 1.05577 1.00687 0.95429 1.20875 0.96691 0.93762 0.95029 0.94177 0.94071 0.89616 0.92341 0.92804 0.91245 0.92303 0.91759 0.93165 0.88963 0.90923 0.85534 0.85837 0.86535 0.84509 0.90676 0.86118 0.86315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 11.01 101.05 1.11 1.28 16 2 O -0.38 -3.13 6.96 -35.23 -0.25 -3.37 16 3 C 0.05 0.43 5.73 37.16 0.21 0.64 16 4 C 0.14 1.37 3.15 -67.93 -0.21 1.16 16 5 H 0.11 1.23 6.92 -51.92 -0.36 0.87 16 6 C -0.16 -1.25 8.88 37.15 0.33 -0.92 16 7 N -0.61 -6.93 2.76 -175.63 -0.49 -7.41 16 8 C 0.07 0.64 9.09 59.85 0.54 1.18 16 9 C 0.56 7.98 7.60 -13.04 -0.10 7.88 16 10 O -0.56 -9.75 15.57 5.17 0.08 -9.67 16 11 C -0.28 -3.81 8.62 -37.51 -0.32 -4.13 16 12 C 0.03 0.51 9.45 -37.19 -0.35 0.16 16 13 C -0.19 -3.12 5.87 -105.02 -0.62 -3.73 16 14 C -0.04 -0.66 9.78 -39.15 -0.38 -1.04 16 15 C -0.23 -4.72 9.14 -39.47 -0.36 -5.08 16 16 C 0.17 3.79 6.66 -38.88 -0.26 3.54 16 17 O -0.20 -5.08 8.57 0.75 0.01 -5.07 16 18 C -0.39 -10.52 9.94 30.91 0.31 -10.21 16 19 H 0.11 3.01 5.41 -52.49 -0.28 2.72 16 20 C 0.07 1.76 5.49 -17.51 -0.10 1.66 16 21 N -0.87 -23.99 13.96 55.48 0.77 -23.22 16 22 Si 0.91 20.65 28.62 -169.99 -4.86 15.78 16 23 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 24 H -0.28 -6.15 7.11 56.52 0.40 -5.74 16 25 H -0.26 -5.88 7.11 56.52 0.40 -5.48 16 26 C -0.20 -3.71 9.97 -39.47 -0.39 -4.10 16 27 C -0.05 -0.73 9.40 -39.14 -0.37 -1.10 16 28 H 0.04 0.19 8.14 -51.93 -0.42 -0.23 16 29 H 0.04 0.23 8.14 -51.93 -0.42 -0.19 16 30 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 32 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.07 0.56 6.93 -51.93 -0.36 0.20 16 34 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.09 0.79 5.22 -51.93 -0.27 0.52 16 38 H 0.07 0.63 5.84 -51.93 -0.30 0.33 16 39 H 0.13 1.50 4.11 -52.49 -0.22 1.28 16 40 H 0.12 1.86 7.52 -52.48 -0.39 1.46 16 41 H 0.12 1.76 8.06 -52.49 -0.42 1.34 16 42 H 0.14 2.93 5.62 -52.49 -0.29 2.64 16 43 H 0.28 7.20 8.31 -40.82 -0.34 6.86 16 44 H 0.12 2.05 8.06 -52.49 -0.42 1.63 16 45 H 0.12 1.55 6.16 -52.49 -0.32 1.22 16 LS Contribution 370.86 15.07 5.59 5.59 Total: -1.00 -30.05 370.86 -6.27 -36.32 By element: Atomic # 1 Polarization: 10.05 SS G_CDS: -6.17 Total: 3.88 kcal Atomic # 6 Polarization: -11.86 SS G_CDS: -0.96 Total: -12.82 kcal Atomic # 7 Polarization: -30.92 SS G_CDS: 0.29 Total: -30.63 kcal Atomic # 8 Polarization: -17.96 SS G_CDS: -0.16 Total: -18.11 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -4.86 Total: 15.78 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -30.05 -6.27 -36.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193609366.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.308 kcal (2) G-P(sol) polarization free energy of solvation -30.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.323 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds