Wall clock time and date at job start Tue Mar 31 2020 13:08:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42899 * 114.00193 * 2 1 4 4 C 1.52997 * 109.47136 * 180.02562 * 3 2 1 5 5 H 1.09009 * 109.47101 * 186.06748 * 4 3 2 6 6 C 1.52993 * 109.47326 * 306.06916 * 4 3 2 7 7 N 1.46509 * 109.47325 * 66.07146 * 4 3 2 8 8 C 1.46498 * 119.99577 * 293.74470 * 7 4 3 9 9 C 1.34776 * 120.00024 * 113.75003 * 7 4 3 10 10 O 1.21724 * 120.00143 * 359.97438 * 9 7 4 11 11 C 1.46254 * 119.99609 * 180.02562 * 9 7 4 12 12 C 1.35018 * 119.99637 * 179.97438 * 11 9 7 13 13 C 1.46966 * 120.00059 * 179.97438 * 12 11 9 14 14 C 1.40024 * 120.10400 * 180.02562 * 13 12 11 15 15 C 1.37593 * 119.89780 * 179.97438 * 14 13 12 16 16 C 1.39179 * 120.10287 * 0.24844 * 15 14 13 17 17 O 1.35569 * 119.89808 * 179.74426 * 16 15 14 18 18 C 1.34780 * 117.00101 * 354.46460 * 17 16 15 19 19 H 1.07999 * 120.00303 * 5.05130 * 18 17 16 20 20 C 1.38722 * 119.99623 * 185.04451 * 18 17 16 21 21 N 1.31515 * 119.99528 * 180.02562 * 20 18 17 22 22 Si 1.86797 * 120.00407 * 0.02562 * 20 18 17 23 23 H 1.48497 * 109.46932 * 89.99688 * 22 20 18 24 24 H 1.48496 * 109.47032 * 209.99432 * 22 20 18 25 25 H 1.48493 * 109.47096 * 329.99854 * 22 20 18 26 26 C 1.39178 * 120.20157 * 359.49533 * 16 15 14 27 27 C 1.37597 * 120.10048 * 0.50977 * 26 16 15 28 28 H 1.08997 * 109.47183 * 300.00010 * 1 2 3 29 29 H 1.08996 * 109.47138 * 60.00368 * 1 2 3 30 30 H 1.09005 * 109.47017 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47024 * 60.00185 * 3 2 1 32 32 H 1.09006 * 109.46939 * 299.99627 * 3 2 1 33 33 H 1.08995 * 109.47145 * 59.99822 * 6 4 3 34 34 H 1.09001 * 109.47677 * 180.02562 * 6 4 3 35 35 H 1.09001 * 109.47252 * 299.99981 * 6 4 3 36 36 H 1.09001 * 109.47530 * 274.57470 * 8 7 4 37 37 H 1.09004 * 109.47020 * 34.57254 * 8 7 4 38 38 H 1.09005 * 109.46827 * 154.56726 * 8 7 4 39 39 H 1.07997 * 120.00144 * 359.97438 * 11 9 7 40 40 H 1.08003 * 120.00651 * 0.02562 * 12 11 9 41 41 H 1.08002 * 120.04999 * 359.95895 * 14 13 12 42 42 H 1.07998 * 119.95207 * 179.97438 * 15 14 13 43 43 H 0.96998 * 119.99780 * 180.02562 * 21 20 18 44 44 H 1.07997 * 119.95048 * 180.24908 * 26 16 15 45 45 H 1.08000 * 120.05360 * 179.77162 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 1 3.9784 2.1747 0.1080 6 6 3.9773 0.2975 1.1649 7 7 3.9776 0.5877 -1.2635 8 6 3.6292 -0.7997 -1.5794 9 6 4.7048 1.3151 -2.1345 10 8 4.9938 2.4680 -1.8721 11 6 5.1456 0.7194 -3.3953 12 6 5.8737 1.4482 -4.2681 13 6 6.3171 0.8495 -5.5349 14 6 7.0728 1.6032 -6.4414 15 6 7.4862 1.0382 -7.6259 16 6 7.1501 -0.2786 -7.9260 17 8 7.5552 -0.8294 -9.0966 18 6 8.1790 -0.0163 -9.9720 19 1 8.4087 1.0018 -9.6942 20 6 8.5261 -0.4871 -11.2299 21 7 9.1352 0.3062 -12.0839 22 14 8.1284 -2.2478 -11.7107 23 1 6.7825 -2.2981 -12.3362 24 1 9.1425 -2.7377 -12.6785 25 1 8.1439 -3.1071 -10.4998 26 6 6.4037 -1.0333 -7.0258 27 6 5.9858 -0.4767 -5.8388 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.6887 1.8463 0.8900 32 1 1.6887 1.8463 -0.8901 33 1 3.5343 -0.6925 1.0563 34 1 5.0639 0.2117 1.1648 35 1 3.6484 0.7415 2.1045 36 1 4.3647 -1.4695 -1.1338 37 1 2.6413 -1.0266 -1.1785 38 1 3.6224 -0.9354 -2.6609 39 1 4.8887 -0.3034 -3.6283 40 1 6.1309 2.4709 -4.0350 41 1 7.3304 2.6264 -6.2112 42 1 8.0687 1.6189 -8.3259 43 1 9.3776 -0.0229 -12.9635 44 1 6.1486 -2.0560 -7.2610 45 1 5.4035 -1.0618 -5.1424 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000193609366.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:08:15 Heat of formation + Delta-G solvation = -76.944817 kcal Electronic energy + Delta-G solvation = -25587.132625 eV Core-core repulsion = 21763.731755 eV Total energy + Delta-G solvation = -3823.400871 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.18067 -40.87731 -39.07761 -38.55718 -36.69083 -34.82204 -34.28154 -32.80841 -32.00428 -29.77788 -28.26697 -27.85148 -27.45923 -26.35804 -24.91928 -23.80121 -22.60147 -21.04966 -20.09033 -19.39093 -19.09373 -18.62225 -17.44693 -17.11327 -16.89391 -16.68253 -16.35005 -16.08010 -15.78999 -15.62496 -15.55027 -15.34535 -14.76278 -14.39126 -14.27590 -14.07541 -14.04372 -13.92345 -13.45749 -13.38512 -13.34616 -13.03815 -12.82252 -12.72673 -12.64998 -12.60885 -12.32251 -12.06754 -11.98226 -11.92943 -11.30859 -11.15951 -10.90499 -10.67078 -10.53906 -9.92283 -9.61388 -8.74078 -8.53586 -6.25353 -0.29644 0.54698 1.09118 1.32837 1.37597 1.52735 2.05763 2.26476 2.31585 2.79280 2.84259 2.99943 3.14979 3.59548 3.87972 3.90750 4.03575 4.04633 4.20930 4.24558 4.32487 4.43802 4.47732 4.48343 4.52202 4.58737 4.63009 4.64856 4.78138 4.83165 4.85182 4.91056 5.04327 5.10300 5.18062 5.21489 5.29632 5.33340 5.38460 5.55376 5.67544 5.70140 5.79367 5.83115 6.13972 6.16845 6.44217 6.79466 7.19123 7.50588 8.57194 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.027263 B = 0.002074 C = 0.001989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1026.796769 B =13494.358126 C =14076.206234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.394 6.394 3 C 0.058 3.942 4 C 0.133 3.867 5 H 0.094 0.906 6 C -0.147 4.147 7 N -0.601 5.601 8 C 0.065 3.935 9 C 0.545 3.455 10 O -0.597 6.597 11 C -0.242 4.242 12 C 0.012 3.988 13 C -0.160 4.160 14 C -0.045 4.045 15 C -0.243 4.243 16 C 0.137 3.863 17 O -0.233 6.233 18 C -0.404 4.404 19 H 0.084 0.916 20 C 0.011 3.989 21 N -0.917 5.917 22 Si 0.972 3.028 23 H -0.265 1.265 24 H -0.268 1.268 25 H -0.259 1.259 26 C -0.193 4.193 27 C -0.040 4.040 28 H 0.050 0.950 29 H 0.039 0.961 30 H 0.099 0.901 31 H 0.077 0.923 32 H 0.041 0.959 33 H 0.073 0.927 34 H 0.050 0.950 35 H 0.080 0.920 36 H 0.063 0.937 37 H 0.100 0.900 38 H 0.081 0.919 39 H 0.155 0.845 40 H 0.122 0.878 41 H 0.138 0.862 42 H 0.114 0.886 43 H 0.286 0.714 44 H 0.140 0.860 45 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.667 -3.992 25.869 31.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.313 6.313 3 C -0.020 4.020 4 C 0.029 3.971 5 H 0.112 0.888 6 C -0.205 4.205 7 N -0.332 5.332 8 C -0.077 4.077 9 C 0.338 3.662 10 O -0.481 6.481 11 C -0.263 4.263 12 C -0.007 4.007 13 C -0.161 4.161 14 C -0.063 4.063 15 C -0.262 4.262 16 C 0.086 3.914 17 O -0.139 6.139 18 C -0.479 4.479 19 H 0.101 0.899 20 C -0.188 4.188 21 N -0.557 5.557 22 Si 0.794 3.206 23 H -0.189 1.189 24 H -0.193 1.193 25 H -0.183 1.183 26 C -0.212 4.212 27 C -0.057 4.057 28 H 0.069 0.931 29 H 0.058 0.942 30 H 0.117 0.883 31 H 0.095 0.905 32 H 0.059 0.941 33 H 0.092 0.908 34 H 0.069 0.931 35 H 0.099 0.901 36 H 0.082 0.918 37 H 0.118 0.882 38 H 0.100 0.900 39 H 0.172 0.828 40 H 0.139 0.861 41 H 0.156 0.844 42 H 0.132 0.868 43 H 0.096 0.904 44 H 0.158 0.842 45 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -16.353 -3.798 25.729 30.722 hybrid contribution 0.222 0.350 -0.896 0.987 sum -16.131 -3.447 24.833 29.812 Atomic orbital electron populations 1.22896 0.79962 1.03798 1.00452 1.87811 1.20872 1.27337 1.95307 1.22882 0.92667 0.85349 1.01075 1.21252 0.92754 0.98978 0.84084 0.88799 1.21944 1.00999 1.00754 0.96776 1.47819 1.52391 1.14480 1.18523 1.22246 1.03086 0.79853 1.02485 1.18658 0.77547 0.85136 0.84885 1.90752 1.59324 1.19429 1.78572 1.22879 1.06243 1.02552 0.94593 1.22188 0.90067 0.98554 0.89935 1.18809 1.05966 0.95332 0.96001 1.21281 0.93933 0.99585 0.91534 1.21222 1.08349 0.96292 1.00360 1.19932 0.92554 0.92529 0.86345 1.83460 1.67487 1.38445 1.24479 1.20755 1.36742 0.95984 0.94467 0.89858 1.25348 0.95407 1.04034 0.94030 1.69708 1.39823 1.38283 1.07838 0.85194 0.78729 0.77982 0.78714 1.18949 1.19297 1.18328 1.20485 1.04111 1.01336 0.95224 1.21327 0.96031 0.93672 0.94687 0.93131 0.94205 0.88306 0.90467 0.94063 0.90837 0.93114 0.90125 0.91831 0.88193 0.90026 0.82774 0.86057 0.84387 0.86836 0.90387 0.84222 0.81854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 11.01 113.37 1.25 1.46 16 2 O -0.39 -5.11 6.96 -148.98 -1.04 -6.14 16 3 C 0.06 0.80 5.73 71.98 0.41 1.22 16 4 C 0.13 2.27 3.15 44.99 0.14 2.41 16 5 H 0.09 1.96 6.92 -2.38 -0.02 1.94 16 6 C -0.15 -1.93 8.88 71.98 0.64 -1.29 16 7 N -0.60 -11.76 2.76 -827.77 -2.29 -14.05 16 8 C 0.06 0.89 9.09 127.77 1.16 2.05 16 9 C 0.54 14.10 7.60 86.33 0.66 14.76 16 10 O -0.60 -19.81 15.57 -4.43 -0.07 -19.88 16 11 C -0.24 -5.64 8.62 23.61 0.20 -5.44 16 12 C 0.01 0.34 9.45 23.82 0.23 0.56 16 13 C -0.16 -4.86 5.87 -20.12 -0.12 -4.98 16 14 C -0.05 -1.56 9.78 22.55 0.22 -1.34 16 15 C -0.24 -10.38 9.14 22.34 0.20 -10.17 16 16 C 0.14 6.11 6.66 22.72 0.15 6.26 16 17 O -0.23 -12.11 8.57 -20.24 -0.17 -12.28 16 18 C -0.40 -23.09 9.94 67.94 0.68 -22.41 16 19 H 0.08 5.01 5.41 -2.91 -0.02 4.99 16 20 C 0.01 0.63 5.49 84.86 0.47 1.10 16 21 N -0.92 -53.59 13.96 21.62 0.30 -53.29 16 22 Si 0.97 43.84 28.62 68.60 1.96 45.81 16 23 H -0.26 -11.46 7.11 99.48 0.71 -10.76 16 24 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 25 H -0.26 -11.55 7.11 99.48 0.71 -10.85 16 26 C -0.19 -6.77 9.97 22.34 0.22 -6.55 16 27 C -0.04 -1.12 9.40 22.55 0.21 -0.91 16 28 H 0.05 0.33 8.14 -2.39 -0.02 0.31 16 29 H 0.04 0.35 8.14 -2.39 -0.02 0.33 16 30 H 0.10 0.58 8.14 -2.38 -0.02 0.56 16 31 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.04 0.68 8.14 -2.38 -0.02 0.66 16 33 H 0.07 0.93 6.93 -2.39 -0.02 0.91 16 34 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 35 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 36 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 37 H 0.10 1.30 5.22 -2.39 -0.01 1.29 16 38 H 0.08 0.98 5.84 -2.38 -0.01 0.96 16 39 H 0.16 2.70 4.11 -2.91 -0.01 2.68 16 40 H 0.12 3.41 7.52 -2.91 -0.02 3.38 16 41 H 0.14 4.08 8.06 -2.91 -0.02 4.06 16 42 H 0.11 5.33 5.62 -2.91 -0.02 5.31 16 43 H 0.29 15.32 8.31 -92.71 -0.77 14.55 16 44 H 0.14 4.35 8.06 -2.91 -0.02 4.33 16 45 H 0.16 3.19 6.16 -2.91 -0.02 3.17 16 Total: -1.00 -69.33 370.86 6.43 -62.90 By element: Atomic # 1 Polarization: 19.21 SS G_CDS: 1.00 Total: 20.22 kcal Atomic # 6 Polarization: -30.00 SS G_CDS: 6.72 Total: -23.28 kcal Atomic # 7 Polarization: -65.35 SS G_CDS: -1.98 Total: -67.34 kcal Atomic # 8 Polarization: -37.03 SS G_CDS: -1.28 Total: -38.31 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 1.96 Total: 45.81 kcal Total: -69.33 6.43 -62.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193609366.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.043 kcal (2) G-P(sol) polarization free energy of solvation -69.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds