Wall clock time and date at job start Tue Mar 31 2020 12:23:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35893 * 117.00392 * 2 1 4 4 C 1.38736 * 120.05957 * 180.02562 * 3 2 1 5 5 C 1.38138 * 119.94337 * 180.30421 * 4 3 2 6 6 C 1.38270 * 120.05794 * 359.46080 * 5 4 3 7 7 C 1.50697 * 119.94421 * 180.26220 * 6 5 4 8 8 C 1.53002 * 109.46967 * 270.25509 * 7 6 5 9 9 H 1.08997 * 109.47073 * 304.99861 * 8 7 6 10 10 C 1.52993 * 109.47245 * 65.00386 * 8 7 6 11 11 C 1.50700 * 109.47249 * 184.99982 * 8 7 6 12 12 O 1.21288 * 119.99904 * 0.02562 * 11 8 7 13 13 N 1.34774 * 120.00501 * 179.97438 * 11 8 7 14 14 C 1.47070 * 136.05147 * 359.63311 * 13 11 8 15 15 C 1.53239 * 88.08062 * 207.20012 * 14 13 11 16 16 O 1.42907 * 114.19674 * 87.73061 * 15 14 13 17 17 C 1.50697 * 114.32691 * 220.46967 * 15 14 13 18 18 H 1.08002 * 119.99997 * 93.76343 * 17 15 14 19 19 C 1.37878 * 120.00204 * 273.75778 * 17 15 14 20 20 N 1.31513 * 120.00090 * 0.02562 * 19 17 15 21 21 Si 1.86800 * 120.00018 * 179.97438 * 19 17 15 22 22 H 1.48492 * 109.47349 * 0.02562 * 21 19 17 23 23 H 1.48504 * 109.46764 * 120.00547 * 21 19 17 24 24 H 1.48499 * 109.47131 * 240.00019 * 21 19 17 25 25 C 1.47068 * 136.06339 * 179.97438 * 13 11 8 26 26 C 1.38259 * 120.10998 * 0.51383 * 6 5 4 27 27 C 1.38146 * 120.05869 * 359.76954 * 26 6 5 28 28 H 1.09002 * 109.46729 * 299.99846 * 1 2 3 29 29 H 1.09001 * 109.47001 * 59.99870 * 1 2 3 30 30 H 1.08992 * 109.47458 * 180.02562 * 1 2 3 31 31 H 1.08002 * 120.02291 * 0.02562 * 4 3 2 32 32 H 1.08004 * 119.96766 * 179.69880 * 5 4 3 33 33 H 1.08999 * 109.47575 * 30.25213 * 7 6 5 34 34 H 1.09002 * 109.47295 * 150.25537 * 7 6 5 35 35 H 1.08997 * 109.47513 * 59.99745 * 10 8 7 36 36 H 1.09003 * 109.47505 * 180.02562 * 10 8 7 37 37 H 1.09004 * 109.47003 * 299.99961 * 10 8 7 38 38 H 1.08994 * 113.46903 * 321.93475 * 14 13 11 39 39 H 1.08998 * 113.47020 * 92.37639 * 14 13 11 40 40 H 0.96695 * 114.00046 * 86.30015 * 16 15 14 41 41 H 0.96999 * 120.00158 * 179.97438 * 20 19 17 42 42 H 1.08989 * 113.46937 * 267.63073 * 25 13 11 43 43 H 1.09008 * 113.46368 * 38.00982 * 25 13 11 44 44 H 1.08006 * 119.97187 * 179.74376 * 26 6 5 45 45 H 1.07993 * 120.03340 * 179.97438 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 3.4314 1.2847 -0.0005 5 6 4.0561 2.5168 0.0058 6 6 3.3020 3.6757 0.0015 7 6 3.9862 5.0184 0.0024 8 6 4.2179 5.4716 1.4453 9 1 3.2706 5.4662 1.9844 10 6 5.1990 4.5170 2.1285 11 6 4.7895 6.8660 1.4482 12 8 4.9912 7.4409 0.3994 13 7 5.0756 7.4747 2.6161 14 6 4.9723 7.1311 4.0424 15 6 4.8457 8.6287 4.3411 16 8 3.5065 9.1249 4.2903 17 6 5.6039 9.0847 5.5610 18 1 6.6060 9.4745 5.4595 19 6 5.0184 9.0043 6.8067 20 7 3.7983 8.5292 6.9304 21 14 5.9586 9.5689 8.3189 22 1 7.3009 10.0576 7.9134 23 1 5.2125 10.6671 8.9841 24 1 6.1094 8.4312 9.2613 25 6 5.6227 8.7770 3.0255 26 6 1.9212 3.6047 0.0014 27 6 1.2916 2.3751 0.0010 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 4.0209 0.3798 -0.0014 32 1 5.1346 2.5748 0.0103 33 1 4.9441 4.9385 -0.5115 34 1 3.3582 5.7466 -0.5108 35 1 6.1463 4.5224 1.5894 36 1 5.3638 4.8396 3.1565 37 1 4.7856 3.5084 2.1264 38 1 4.0749 6.5635 4.2883 39 1 5.8795 6.6828 4.4477 40 1 3.0201 9.0299 5.1206 41 1 3.3865 8.4723 7.8068 42 1 6.7045 8.7713 3.1572 43 1 5.2778 9.6063 2.4076 44 1 1.3343 4.5114 0.0022 45 1 0.2130 2.3202 0.0014 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000193986769.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:23:08 Heat of formation + Delta-G solvation = -68.833603 kcal Electronic energy + Delta-G solvation = -26562.891663 eV Core-core repulsion = 22739.842521 eV Total energy + Delta-G solvation = -3823.049142 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.38164 -39.71698 -38.20581 -37.32121 -34.34829 -34.01048 -32.20348 -31.30028 -30.49118 -28.52575 -27.84323 -26.11523 -25.48358 -25.07473 -23.18804 -22.46031 -20.97696 -19.71193 -18.30804 -18.20532 -17.37312 -16.59905 -16.27922 -15.95428 -15.58710 -15.22276 -15.11042 -14.82811 -14.33301 -14.21193 -14.06111 -13.74291 -13.43756 -13.33102 -12.95341 -12.61533 -12.51512 -12.36124 -12.17897 -11.93097 -11.85682 -11.59021 -11.43232 -11.25392 -11.09604 -11.03676 -10.95352 -10.78055 -10.73720 -10.48524 -10.26128 -9.56319 -9.15358 -9.08074 -8.78513 -8.38422 -8.17210 -7.82892 -6.41952 -4.52069 1.23052 1.30472 3.07028 3.12068 3.21605 3.23206 3.25822 3.51639 3.72169 4.16828 4.62517 4.71886 4.75172 4.83618 4.85358 4.87567 5.05583 5.13281 5.17245 5.20612 5.28817 5.35871 5.50565 5.52788 5.65597 5.77090 5.89271 5.94716 5.95714 6.01192 6.16626 6.19397 6.25189 6.29378 6.31954 6.42862 6.50923 6.63266 6.64906 6.66462 6.70299 7.10541 7.21667 7.61547 7.79669 8.50695 8.55657 8.79656 9.19452 9.47867 10.64681 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.018462 B = 0.002680 C = 0.002510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1516.302003 B =10444.167390 C =11152.242794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.321 6.321 3 C 0.117 3.883 4 C -0.151 4.151 5 C -0.075 4.075 6 C -0.109 4.109 7 C -0.057 4.057 8 C -0.097 4.097 9 H 0.093 0.907 10 C -0.146 4.146 11 C 0.539 3.461 12 O -0.567 6.567 13 N -0.632 5.632 14 C 0.074 3.926 15 C 0.238 3.762 16 O -0.572 6.572 17 C -0.532 4.532 18 H 0.073 0.927 19 C 0.071 3.929 20 N -0.898 5.898 21 Si 0.909 3.091 22 H -0.270 1.270 23 H -0.280 1.280 24 H -0.281 1.281 25 C 0.106 3.894 26 C -0.076 4.076 27 C -0.205 4.205 28 H 0.055 0.945 29 H 0.054 0.946 30 H 0.098 0.902 31 H 0.128 0.872 32 H 0.130 0.870 33 H 0.077 0.923 34 H 0.079 0.921 35 H 0.057 0.943 36 H 0.065 0.935 37 H 0.066 0.934 38 H 0.063 0.937 39 H 0.081 0.919 40 H 0.393 0.607 41 H 0.273 0.727 42 H 0.084 0.916 43 H 0.065 0.935 44 H 0.126 0.874 45 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.112 -14.843 -9.272 17.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.234 6.234 3 C 0.072 3.928 4 C -0.170 4.170 5 C -0.093 4.093 6 C -0.109 4.109 7 C -0.094 4.094 8 C -0.118 4.118 9 H 0.112 0.888 10 C -0.203 4.203 11 C 0.329 3.671 12 O -0.447 6.447 13 N -0.365 5.365 14 C -0.049 4.049 15 C 0.196 3.804 16 O -0.385 6.385 17 C -0.570 4.570 18 H 0.091 0.909 19 C -0.131 4.131 20 N -0.539 5.539 21 Si 0.736 3.264 22 H -0.194 1.194 23 H -0.206 1.206 24 H -0.207 1.207 25 C -0.017 4.017 26 C -0.094 4.094 27 C -0.224 4.224 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.116 0.884 31 H 0.146 0.854 32 H 0.148 0.852 33 H 0.096 0.904 34 H 0.098 0.902 35 H 0.076 0.924 36 H 0.084 0.916 37 H 0.085 0.915 38 H 0.082 0.918 39 H 0.099 0.901 40 H 0.250 0.750 41 H 0.084 0.916 42 H 0.102 0.898 43 H 0.083 0.917 44 H 0.144 0.856 45 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -3.960 -14.741 -10.480 18.515 hybrid contribution -0.091 0.116 1.525 1.532 sum -4.051 -14.625 -8.955 17.621 Atomic orbital electron populations 1.23034 0.78523 1.03769 1.01410 1.86047 1.21294 1.27157 1.88949 1.19028 0.92404 0.84037 0.97315 1.20402 0.91306 0.98594 1.06653 1.20916 0.99936 0.90886 0.97563 1.19857 0.93507 0.95326 1.02235 1.20348 1.01182 0.92590 0.95314 1.21139 1.00702 0.92388 0.97586 0.88850 1.21860 0.98459 0.98961 1.01052 1.20009 0.78202 0.87003 0.81907 1.90627 1.56201 1.67020 1.30870 1.49694 1.61460 1.19339 1.06011 1.24128 1.00605 1.03412 0.76752 1.19519 0.82263 0.87736 0.90835 1.86045 1.25639 1.84289 1.42514 1.21475 1.01606 1.43331 0.90607 0.90908 1.25083 0.95044 0.93415 0.99576 1.69270 1.13780 1.45573 1.25265 0.86264 0.79994 0.78521 0.81662 1.19414 1.20629 1.20665 1.23320 0.98209 0.84876 0.95261 1.20905 0.94111 0.97119 0.97231 1.21209 0.99914 0.92337 1.08940 0.92605 0.92722 0.88385 0.85363 0.85237 0.90442 0.90223 0.92438 0.91589 0.91514 0.91802 0.90142 0.75006 0.91645 0.89810 0.91656 0.85633 0.85614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 9.81 101.05 0.99 1.18 16 2 O -0.32 -3.42 10.50 -19.40 -0.20 -3.63 16 3 C 0.12 1.34 6.69 -39.21 -0.26 1.07 16 4 C -0.15 -1.67 9.99 -39.43 -0.39 -2.06 16 5 C -0.07 -0.83 7.94 -39.61 -0.31 -1.15 16 6 C -0.11 -1.33 4.72 -104.60 -0.49 -1.82 16 7 C -0.06 -0.78 4.19 -27.88 -0.12 -0.90 16 8 C -0.10 -1.50 2.59 -91.77 -0.24 -1.74 16 9 H 0.09 1.46 8.14 -51.93 -0.42 1.04 16 10 C -0.15 -1.98 8.63 37.15 0.32 -1.66 16 11 C 0.54 10.76 7.40 -10.99 -0.08 10.68 16 12 O -0.57 -12.85 16.70 5.55 0.09 -12.76 16 13 N -0.63 -13.21 3.64 -185.35 -0.67 -13.89 16 14 C 0.07 1.56 6.14 -8.63 -0.05 1.50 16 15 C 0.24 5.66 1.57 -91.38 -0.14 5.51 16 16 O -0.57 -14.68 13.54 -35.23 -0.48 -15.15 16 17 C -0.53 -13.13 8.69 -34.44 -0.30 -13.43 16 18 H 0.07 1.75 7.81 -52.49 -0.41 1.34 16 19 C 0.07 1.74 5.39 -17.82 -0.10 1.65 16 20 N -0.90 -22.44 11.01 55.43 0.61 -21.83 16 21 Si 0.91 19.17 29.54 -169.99 -5.02 14.15 16 22 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 23 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 24 H -0.28 -5.90 7.11 56.52 0.40 -5.49 16 25 C 0.11 2.31 8.04 -8.49 -0.07 2.24 16 26 C -0.08 -0.88 9.69 -39.61 -0.38 -1.26 16 27 C -0.21 -2.23 9.04 -39.43 -0.36 -2.58 16 28 H 0.06 0.35 7.66 -51.93 -0.40 -0.05 16 29 H 0.05 0.32 7.66 -51.93 -0.40 -0.07 16 30 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.13 1.22 8.06 -52.49 -0.42 0.80 16 32 H 0.13 1.24 8.02 -52.48 -0.42 0.82 16 33 H 0.08 1.06 8.09 -51.93 -0.42 0.64 16 34 H 0.08 1.16 7.90 -51.93 -0.41 0.75 16 35 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 36 H 0.07 0.96 6.35 -51.93 -0.33 0.63 16 37 H 0.07 0.80 6.25 -51.93 -0.32 0.48 16 38 H 0.06 1.35 8.14 -51.93 -0.42 0.92 16 39 H 0.08 1.60 8.05 -51.93 -0.42 1.18 16 40 H 0.39 10.19 6.32 45.56 0.29 10.47 16 41 H 0.27 6.47 8.31 -40.82 -0.34 6.13 16 42 H 0.08 1.67 8.10 -51.94 -0.42 1.25 16 43 H 0.06 1.47 8.14 -51.92 -0.42 1.05 16 44 H 0.13 1.34 8.06 -52.48 -0.42 0.92 16 45 H 0.13 1.09 6.30 -52.49 -0.33 0.76 16 LS Contribution 370.41 15.07 5.58 5.58 Total: -1.00 -29.00 370.41 -8.17 -37.17 By element: Atomic # 1 Polarization: 19.21 SS G_CDS: -6.09 Total: 13.12 kcal Atomic # 6 Polarization: -0.78 SS G_CDS: -1.99 Total: -2.77 kcal Atomic # 7 Polarization: -35.65 SS G_CDS: -0.06 Total: -35.72 kcal Atomic # 8 Polarization: -30.95 SS G_CDS: -0.59 Total: -31.54 kcal Atomic # 14 Polarization: 19.17 SS G_CDS: -5.02 Total: 14.15 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -29.00 -8.17 -37.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193986769.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.664 kcal (2) G-P(sol) polarization free energy of solvation -29.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds