Wall clock time and date at job start Tue Mar 31 2020 12:23:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35893 * 117.00392 * 2 1 4 4 C 1.38736 * 120.05957 * 180.02562 * 3 2 1 5 5 C 1.38138 * 119.94337 * 180.30421 * 4 3 2 6 6 C 1.38270 * 120.05794 * 359.46080 * 5 4 3 7 7 C 1.50697 * 119.94421 * 180.26220 * 6 5 4 8 8 C 1.53002 * 109.46967 * 270.25509 * 7 6 5 9 9 H 1.08997 * 109.47073 * 304.99861 * 8 7 6 10 10 C 1.52993 * 109.47245 * 65.00386 * 8 7 6 11 11 C 1.50700 * 109.47249 * 184.99982 * 8 7 6 12 12 O 1.21288 * 119.99904 * 0.02562 * 11 8 7 13 13 N 1.34774 * 120.00501 * 179.97438 * 11 8 7 14 14 C 1.47070 * 136.05147 * 359.63311 * 13 11 8 15 15 C 1.53239 * 88.08062 * 207.20012 * 14 13 11 16 16 O 1.42907 * 114.19674 * 87.73061 * 15 14 13 17 17 C 1.50697 * 114.32691 * 220.46967 * 15 14 13 18 18 H 1.08002 * 119.99997 * 93.76343 * 17 15 14 19 19 C 1.37878 * 120.00204 * 273.75778 * 17 15 14 20 20 N 1.31513 * 120.00090 * 0.02562 * 19 17 15 21 21 Si 1.86800 * 120.00018 * 179.97438 * 19 17 15 22 22 H 1.48492 * 109.47349 * 0.02562 * 21 19 17 23 23 H 1.48504 * 109.46764 * 120.00547 * 21 19 17 24 24 H 1.48499 * 109.47131 * 240.00019 * 21 19 17 25 25 C 1.47068 * 136.06339 * 179.97438 * 13 11 8 26 26 C 1.38259 * 120.10998 * 0.51383 * 6 5 4 27 27 C 1.38146 * 120.05869 * 359.76954 * 26 6 5 28 28 H 1.09002 * 109.46729 * 299.99846 * 1 2 3 29 29 H 1.09001 * 109.47001 * 59.99870 * 1 2 3 30 30 H 1.08992 * 109.47458 * 180.02562 * 1 2 3 31 31 H 1.08002 * 120.02291 * 0.02562 * 4 3 2 32 32 H 1.08004 * 119.96766 * 179.69880 * 5 4 3 33 33 H 1.08999 * 109.47575 * 30.25213 * 7 6 5 34 34 H 1.09002 * 109.47295 * 150.25537 * 7 6 5 35 35 H 1.08997 * 109.47513 * 59.99745 * 10 8 7 36 36 H 1.09003 * 109.47505 * 180.02562 * 10 8 7 37 37 H 1.09004 * 109.47003 * 299.99961 * 10 8 7 38 38 H 1.08994 * 113.46903 * 321.93475 * 14 13 11 39 39 H 1.08998 * 113.47020 * 92.37639 * 14 13 11 40 40 H 0.96695 * 114.00046 * 86.30015 * 16 15 14 41 41 H 0.96999 * 120.00158 * 179.97438 * 20 19 17 42 42 H 1.08989 * 113.46937 * 267.63073 * 25 13 11 43 43 H 1.09008 * 113.46368 * 38.00982 * 25 13 11 44 44 H 1.08006 * 119.97187 * 179.74376 * 26 6 5 45 45 H 1.07993 * 120.03340 * 179.97438 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 3.4314 1.2847 -0.0005 5 6 4.0561 2.5168 0.0058 6 6 3.3020 3.6757 0.0015 7 6 3.9862 5.0184 0.0024 8 6 4.2179 5.4716 1.4453 9 1 3.2706 5.4662 1.9844 10 6 5.1990 4.5170 2.1285 11 6 4.7895 6.8660 1.4482 12 8 4.9912 7.4409 0.3994 13 7 5.0756 7.4747 2.6161 14 6 4.9723 7.1311 4.0424 15 6 4.8457 8.6287 4.3411 16 8 3.5065 9.1249 4.2903 17 6 5.6039 9.0847 5.5610 18 1 6.6060 9.4745 5.4595 19 6 5.0184 9.0043 6.8067 20 7 3.7983 8.5292 6.9304 21 14 5.9586 9.5689 8.3189 22 1 7.3009 10.0576 7.9134 23 1 5.2125 10.6671 8.9841 24 1 6.1094 8.4312 9.2613 25 6 5.6227 8.7770 3.0255 26 6 1.9212 3.6047 0.0014 27 6 1.2916 2.3751 0.0010 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 4.0209 0.3798 -0.0014 32 1 5.1346 2.5748 0.0103 33 1 4.9441 4.9385 -0.5115 34 1 3.3582 5.7466 -0.5108 35 1 6.1463 4.5224 1.5894 36 1 5.3638 4.8396 3.1565 37 1 4.7856 3.5084 2.1264 38 1 4.0749 6.5635 4.2883 39 1 5.8795 6.6828 4.4477 40 1 3.0201 9.0299 5.1206 41 1 3.3865 8.4723 7.8068 42 1 6.7045 8.7713 3.1572 43 1 5.2778 9.6063 2.4076 44 1 1.3343 4.5114 0.0022 45 1 0.2130 2.3202 0.0014 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000193986769.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:23:07 Heat of formation + Delta-G solvation = -86.673498 kcal Electronic energy + Delta-G solvation = -26563.665259 eV Core-core repulsion = 22739.842521 eV Total energy + Delta-G solvation = -3823.822738 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.52652 -41.02839 -39.50882 -38.56867 -35.90042 -35.52502 -34.11833 -32.14326 -31.56721 -30.09517 -28.59475 -27.28622 -27.06150 -26.76554 -24.33163 -23.40312 -22.11213 -21.24716 -19.88334 -19.15710 -19.06737 -18.02173 -17.31007 -17.19997 -16.85108 -16.61437 -16.39304 -16.08690 -15.92246 -15.42635 -15.21898 -14.77538 -14.60908 -14.59013 -14.32451 -14.01851 -13.96309 -13.58656 -13.42159 -13.30672 -13.05968 -12.82579 -12.78797 -12.74425 -12.41448 -12.25432 -12.18950 -12.13881 -12.05716 -11.73114 -11.65498 -11.31620 -10.86755 -10.61843 -10.19928 -9.92976 -9.56984 -9.03578 -8.27109 -6.43855 0.39695 0.42520 1.46112 1.51019 1.61022 1.64630 1.98835 2.39879 2.41279 2.78129 2.94993 3.41289 3.74366 3.80737 3.91512 3.96080 4.02107 4.10753 4.17716 4.30147 4.33843 4.39498 4.46079 4.48144 4.51315 4.62996 4.66065 4.74557 4.77767 4.82153 4.83408 4.89338 4.92537 4.98888 5.10269 5.19486 5.24019 5.25577 5.32380 5.40688 5.72382 5.73675 5.82258 5.91769 6.45766 6.62241 6.90411 7.15741 7.30322 7.49319 8.79170 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.018462 B = 0.002680 C = 0.002510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1516.302003 B =10444.167390 C =11152.242794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.335 6.335 3 C 0.110 3.890 4 C -0.159 4.159 5 C -0.074 4.074 6 C -0.121 4.121 7 C -0.046 4.046 8 C -0.089 4.089 9 H 0.092 0.908 10 C -0.139 4.139 11 C 0.532 3.468 12 O -0.597 6.597 13 N -0.635 5.635 14 C 0.092 3.908 15 C 0.216 3.784 16 O -0.587 6.587 17 C -0.550 4.550 18 H 0.074 0.926 19 C 0.031 3.969 20 N -0.917 5.917 21 Si 0.970 3.030 22 H -0.267 1.267 23 H -0.283 1.283 24 H -0.276 1.276 25 C 0.105 3.895 26 C -0.086 4.086 27 C -0.208 4.208 28 H 0.061 0.939 29 H 0.063 0.937 30 H 0.119 0.881 31 H 0.142 0.858 32 H 0.145 0.855 33 H 0.077 0.923 34 H 0.065 0.935 35 H 0.064 0.936 36 H 0.056 0.944 37 H 0.086 0.914 38 H 0.061 0.939 39 H 0.095 0.905 40 H 0.389 0.611 41 H 0.276 0.724 42 H 0.103 0.897 43 H 0.050 0.950 44 H 0.129 0.871 45 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.844 -16.544 -8.884 19.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.249 6.249 3 C 0.065 3.935 4 C -0.177 4.177 5 C -0.092 4.092 6 C -0.121 4.121 7 C -0.084 4.084 8 C -0.110 4.110 9 H 0.111 0.889 10 C -0.196 4.196 11 C 0.324 3.676 12 O -0.479 6.479 13 N -0.367 5.367 14 C -0.031 4.031 15 C 0.175 3.825 16 O -0.400 6.400 17 C -0.588 4.588 18 H 0.092 0.908 19 C -0.169 4.169 20 N -0.558 5.558 21 Si 0.796 3.204 22 H -0.191 1.191 23 H -0.209 1.209 24 H -0.202 1.202 25 C -0.018 4.018 26 C -0.104 4.104 27 C -0.227 4.227 28 H 0.079 0.921 29 H 0.082 0.918 30 H 0.137 0.863 31 H 0.160 0.840 32 H 0.163 0.837 33 H 0.096 0.904 34 H 0.084 0.916 35 H 0.083 0.917 36 H 0.075 0.925 37 H 0.104 0.896 38 H 0.079 0.921 39 H 0.113 0.887 40 H 0.245 0.755 41 H 0.086 0.914 42 H 0.120 0.880 43 H 0.069 0.931 44 H 0.147 0.853 45 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -3.696 -16.457 -10.100 19.660 hybrid contribution -0.251 0.635 1.355 1.517 sum -3.947 -15.822 -8.746 18.504 Atomic orbital electron populations 1.23315 0.76676 1.05497 1.02092 1.86033 1.23277 1.26842 1.88768 1.19246 0.92830 0.84519 0.96917 1.20638 0.91583 0.99094 1.06417 1.21064 1.00699 0.90478 0.96929 1.19732 0.93790 0.94680 1.03887 1.20209 1.01111 0.93276 0.93827 1.21159 1.00727 0.89913 0.99161 0.88947 1.21827 0.98326 0.99245 1.00209 1.20869 0.77385 0.88355 0.80976 1.90605 1.57406 1.68162 1.31776 1.49760 1.61617 1.18944 1.06383 1.23893 1.01060 1.01510 0.76621 1.19811 0.81486 0.89630 0.91565 1.86030 1.26775 1.84874 1.42337 1.21679 1.01858 1.43948 0.91285 0.90777 1.25768 0.95802 0.93390 1.01925 1.69328 1.14665 1.45887 1.25938 0.85309 0.78767 0.77929 0.78428 1.19094 1.20882 1.20163 1.23331 0.99075 0.85182 0.94233 1.21050 0.94153 0.97772 0.97389 1.21402 1.00984 0.91826 1.08465 0.92078 0.91832 0.86276 0.83998 0.83728 0.90441 0.91645 0.91698 0.92456 0.89564 0.92089 0.88744 0.75504 0.91372 0.87959 0.93107 0.85292 0.83762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.81 113.37 1.11 1.33 16 2 O -0.34 -6.53 10.50 -92.34 -0.97 -7.50 16 3 C 0.11 2.32 6.69 22.51 0.15 2.47 16 4 C -0.16 -3.21 9.99 22.37 0.22 -2.99 16 5 C -0.07 -1.50 7.94 22.25 0.18 -1.33 16 6 C -0.12 -2.80 4.72 -19.85 -0.09 -2.89 16 7 C -0.05 -1.25 4.19 29.85 0.12 -1.13 16 8 C -0.09 -2.68 2.59 -11.54 -0.03 -2.71 16 9 H 0.09 2.84 8.14 -2.39 -0.02 2.82 16 10 C -0.14 -3.53 8.63 71.98 0.62 -2.91 16 11 C 0.53 21.20 7.40 87.66 0.65 21.85 16 12 O -0.60 -27.29 16.70 -3.05 -0.05 -27.34 16 13 N -0.63 -26.41 3.64 -859.20 -3.13 -29.53 16 14 C 0.09 3.82 6.14 83.09 0.51 4.33 16 15 C 0.22 10.30 1.57 -11.29 -0.02 10.28 16 16 O -0.59 -30.65 13.54 -148.98 -2.02 -32.67 16 17 C -0.55 -26.94 8.69 25.60 0.22 -26.71 16 18 H 0.07 3.52 7.81 -2.91 -0.02 3.50 16 19 C 0.03 1.52 5.39 84.66 0.46 1.98 16 20 N -0.92 -45.58 11.01 21.45 0.24 -45.34 16 21 Si 0.97 38.68 29.54 68.60 2.03 40.71 16 22 H -0.27 -10.41 7.11 99.48 0.71 -9.70 16 23 H -0.28 -11.32 7.11 99.48 0.71 -10.61 16 24 H -0.28 -10.74 7.11 99.48 0.71 -10.03 16 25 C 0.10 4.58 8.04 83.19 0.67 5.24 16 26 C -0.09 -1.91 9.69 22.25 0.22 -1.69 16 27 C -0.21 -4.18 9.04 22.37 0.20 -3.98 16 28 H 0.06 0.64 7.66 -2.39 -0.02 0.62 16 29 H 0.06 0.62 7.66 -2.39 -0.02 0.60 16 30 H 0.12 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.14 2.40 8.06 -2.91 -0.02 2.38 16 32 H 0.15 2.43 8.02 -2.91 -0.02 2.40 16 33 H 0.08 2.06 8.09 -2.39 -0.02 2.04 16 34 H 0.06 1.93 7.90 -2.39 -0.02 1.91 16 35 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 36 H 0.06 1.56 6.35 -2.39 -0.02 1.55 16 37 H 0.09 1.87 6.25 -2.38 -0.01 1.85 16 38 H 0.06 2.55 8.14 -2.39 -0.02 2.53 16 39 H 0.09 3.64 8.05 -2.39 -0.02 3.63 16 40 H 0.39 20.53 6.32 -74.06 -0.47 20.07 16 41 H 0.28 12.96 8.31 -92.71 -0.77 12.19 16 42 H 0.10 4.04 8.10 -2.39 -0.02 4.02 16 43 H 0.05 2.33 8.14 -2.38 -0.02 2.31 16 44 H 0.13 2.68 8.06 -2.91 -0.02 2.66 16 45 H 0.14 2.23 6.30 -2.91 -0.02 2.21 16 Total: -1.00 -61.06 370.41 1.82 -59.24 By element: Atomic # 1 Polarization: 40.76 SS G_CDS: 0.53 Total: 41.29 kcal Atomic # 6 Polarization: -4.05 SS G_CDS: 5.19 Total: 1.14 kcal Atomic # 7 Polarization: -71.98 SS G_CDS: -2.89 Total: -74.87 kcal Atomic # 8 Polarization: -64.47 SS G_CDS: -3.04 Total: -67.51 kcal Atomic # 14 Polarization: 38.68 SS G_CDS: 2.03 Total: 40.71 kcal Total: -61.06 1.82 -59.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193986769.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.432 kcal (2) G-P(sol) polarization free energy of solvation -61.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds