Wall clock time and date at job start Tue Mar 31 2020 12:56:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.20755 * 120.00344 * 2 1 4 4 C 1.50704 * 119.99727 * 180.02562 * 2 1 3 5 5 C 1.52998 * 109.46997 * 179.97438 * 4 2 1 6 6 C 1.50703 * 109.47321 * 179.97438 * 5 4 2 7 7 C 1.38264 * 119.94404 * 89.99219 * 6 5 4 8 8 C 1.38145 * 120.05242 * 180.02562 * 7 6 5 9 9 C 1.38725 * 119.94765 * 0.02562 * 8 7 6 10 10 O 1.35903 * 120.05694 * 180.02562 * 9 8 7 11 11 C 1.42900 * 116.99990 * 180.02562 * 10 9 8 12 12 C 1.50701 * 109.47192 * 180.02562 * 11 10 9 13 13 O 1.21275 * 119.99943 * 0.02562 * 12 11 10 14 14 N 1.34776 * 119.99964 * 180.02562 * 12 11 10 15 15 C 1.46498 * 119.99973 * 179.97438 * 14 12 11 16 16 H 1.09007 * 109.46864 * 325.00310 * 15 14 12 17 17 C 1.53000 * 109.46908 * 85.00105 * 15 14 12 18 18 C 1.50693 * 109.47398 * 205.00064 * 15 14 12 19 19 H 1.08005 * 120.00291 * 354.36544 * 18 15 14 20 20 C 1.37881 * 120.00259 * 174.36876 * 18 15 14 21 21 N 1.31514 * 120.00212 * 156.61898 * 20 18 15 22 22 Si 1.86795 * 119.99775 * 336.88788 * 20 18 15 23 23 H 1.48501 * 109.47165 * 179.72704 * 22 20 18 24 24 H 1.48500 * 109.47318 * 299.72681 * 22 20 18 25 25 H 1.48500 * 109.47076 * 59.72783 * 22 20 18 26 26 C 1.38732 * 119.89029 * 0.28083 * 9 8 7 27 27 C 1.38153 * 119.93897 * 359.46346 * 26 9 8 28 28 H 1.09006 * 109.46729 * 239.99741 * 1 2 3 29 29 H 1.09006 * 109.46937 * 359.97438 * 1 2 3 30 30 H 1.08995 * 109.47825 * 119.99411 * 1 2 3 31 31 H 1.09000 * 109.47550 * 59.99431 * 4 2 1 32 32 H 1.09004 * 109.46777 * 299.99135 * 4 2 1 33 33 H 1.09000 * 109.47214 * 59.99496 * 5 4 2 34 34 H 1.08994 * 109.46893 * 299.99311 * 5 4 2 35 35 H 1.07996 * 119.97041 * 0.03078 * 7 6 5 36 36 H 1.08006 * 120.02374 * 179.97438 * 8 7 6 37 37 H 1.09007 * 109.46839 * 60.00409 * 11 10 9 38 38 H 1.08994 * 109.47246 * 300.00581 * 11 10 9 39 39 H 0.96999 * 120.00353 * 0.02562 * 14 12 11 40 40 H 1.08994 * 109.47507 * 53.10469 * 17 15 14 41 41 H 1.09003 * 109.46967 * 173.10985 * 17 15 14 42 42 H 1.09007 * 109.46955 * 293.10213 * 17 15 14 43 43 H 0.97003 * 119.99433 * 355.20223 * 21 20 18 44 44 H 1.07996 * 120.03256 * 179.72476 * 26 9 8 45 45 H 1.07999 * 119.96904 * 180.23609 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1108 1.0457 0.0000 4 6 2.2605 -1.3052 -0.0006 5 6 3.7647 -1.0256 -0.0011 6 6 4.5182 -2.3308 -0.0011 7 6 4.8628 -2.9288 -1.1991 8 6 5.5531 -4.1254 -1.2017 9 6 5.9000 -4.7273 -0.0009 10 8 6.5796 -5.9043 -0.0009 11 6 6.9030 -6.4666 1.2724 12 6 7.6507 -7.7600 1.0751 13 8 7.8841 -8.1606 -0.0456 14 7 8.0601 -8.4716 2.1440 15 6 8.7864 -9.7293 1.9521 16 1 8.4018 -10.2399 1.0692 17 6 10.2757 -9.4343 1.7624 18 6 8.5985 -10.6076 3.1621 19 1 8.0752 -10.2295 4.0279 20 6 9.0947 -11.8940 3.1640 21 7 9.3542 -12.4971 4.3036 22 14 9.4055 -12.7776 1.5479 23 1 9.9414 -14.1353 1.8210 24 1 8.1319 -12.8908 0.7927 25 1 10.3904 -12.0090 0.7450 26 6 5.5476 -4.1285 1.1998 27 6 4.8619 -2.9291 1.1971 28 1 -0.3633 -0.5139 0.8900 29 1 -0.3633 1.0277 0.0005 30 1 -0.3634 -0.5137 -0.8900 31 1 1.9971 -1.8764 -0.8907 32 1 1.9972 -1.8770 0.8893 33 1 4.0284 -0.4542 0.8889 34 1 4.0276 -0.4540 -0.8911 35 1 4.5921 -2.4599 -2.1336 36 1 5.8216 -4.5924 -2.1378 37 1 5.9853 -6.6582 1.8286 38 1 7.5268 -5.7682 1.8302 39 1 7.8731 -8.1515 3.0403 40 1 10.6320 -8.8179 2.5878 41 1 10.8320 -10.3714 1.7422 42 1 10.4240 -8.9033 0.8220 43 1 9.2628 -12.0139 5.1397 44 1 5.8127 -4.5973 2.1359 45 1 4.5907 -2.4606 2.1316 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194624652.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:56:01 Heat of formation + Delta-G solvation = -123.483208 kcal Electronic energy + Delta-G solvation = -25081.220085 eV Core-core repulsion = 21255.801158 eV Total energy + Delta-G solvation = -3825.418927 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.45929 -40.63004 -40.25168 -38.60401 -36.81532 -34.55650 -34.51906 -32.27464 -31.85523 -31.54982 -29.79550 -28.62872 -26.89436 -25.07677 -24.01469 -22.81792 -21.84836 -21.35248 -20.42476 -19.85642 -19.32152 -18.08613 -17.41051 -17.23754 -16.99686 -16.75143 -16.28185 -16.02890 -15.76540 -15.56662 -15.43351 -15.16500 -14.90514 -14.60026 -14.48946 -14.28891 -13.99579 -13.79151 -13.60155 -13.47355 -13.32009 -13.14310 -12.93432 -12.85817 -12.45643 -12.33153 -12.09202 -12.04258 -11.88353 -11.76698 -11.68687 -11.24020 -10.88524 -10.59805 -10.46699 -10.01218 -9.95476 -9.05225 -8.82082 -6.43405 0.38759 0.42031 1.06992 1.46784 1.49344 1.56914 1.64008 1.71842 2.41852 2.74899 2.79049 2.94262 3.21345 3.63560 3.89248 3.90812 3.97539 4.06426 4.08674 4.11461 4.21302 4.35801 4.43742 4.47228 4.52019 4.64318 4.69548 4.71590 4.74840 4.75773 4.85466 4.97142 5.05602 5.12869 5.21370 5.25656 5.33146 5.39775 5.40414 5.54871 5.62899 5.68659 5.83115 6.01371 6.37246 6.51957 6.62774 6.73704 7.23063 7.33521 8.56052 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.032850 B = 0.001835 C = 0.001803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 852.166179 B =15251.135230 C =15521.687882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.356 3.644 3 O -0.508 6.508 4 C -0.166 4.166 5 C -0.063 4.063 6 C -0.122 4.122 7 C -0.075 4.075 8 C -0.165 4.165 9 C 0.104 3.896 10 O -0.321 6.321 11 C 0.051 3.949 12 C 0.501 3.499 13 O -0.582 6.582 14 N -0.695 5.695 15 C 0.246 3.754 16 H 0.021 0.979 17 C -0.150 4.150 18 C -0.621 4.621 19 H 0.047 0.953 20 C 0.005 3.995 21 N -0.917 5.917 22 Si 1.064 2.936 23 H -0.280 1.280 24 H -0.275 1.275 25 H -0.256 1.256 26 C -0.210 4.210 27 C -0.076 4.076 28 H 0.112 0.888 29 H 0.071 0.929 30 H 0.112 0.888 31 H 0.117 0.883 32 H 0.117 0.883 33 H 0.070 0.930 34 H 0.069 0.931 35 H 0.148 0.852 36 H 0.126 0.874 37 H 0.119 0.881 38 H 0.121 0.879 39 H 0.409 0.591 40 H 0.055 0.945 41 H 0.052 0.948 42 H 0.036 0.964 43 H 0.262 0.738 44 H 0.146 0.854 45 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.707 24.865 -6.498 30.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.261 4.261 2 C 0.235 3.765 3 O -0.386 6.386 4 C -0.203 4.203 5 C -0.101 4.101 6 C -0.122 4.122 7 C -0.093 4.093 8 C -0.183 4.183 9 C 0.059 3.941 10 O -0.234 6.234 11 C -0.027 4.027 12 C 0.287 3.713 13 O -0.463 6.463 14 N -0.346 5.346 15 C 0.141 3.859 16 H 0.039 0.961 17 C -0.208 4.208 18 C -0.659 4.659 19 H 0.066 0.934 20 C -0.198 4.198 21 N -0.550 5.550 22 Si 0.886 3.114 23 H -0.205 1.205 24 H -0.200 1.200 25 H -0.180 1.180 26 C -0.228 4.228 27 C -0.094 4.094 28 H 0.131 0.869 29 H 0.090 0.910 30 H 0.131 0.869 31 H 0.135 0.865 32 H 0.135 0.865 33 H 0.089 0.911 34 H 0.088 0.912 35 H 0.166 0.834 36 H 0.144 0.856 37 H 0.137 0.863 38 H 0.138 0.862 39 H 0.245 0.755 40 H 0.074 0.926 41 H 0.071 0.929 42 H 0.055 0.945 43 H 0.072 0.928 44 H 0.164 0.836 45 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -15.676 23.550 -8.063 29.417 hybrid contribution -0.359 1.129 1.554 1.954 sum -16.035 24.679 -6.509 30.142 Atomic orbital electron populations 1.22365 0.92249 1.05026 1.06492 1.25182 0.93336 0.89885 0.68049 1.90423 1.73115 1.36805 1.38208 1.22201 0.94243 0.97076 1.06751 1.20268 0.93518 0.92813 1.03452 1.19910 1.01527 0.97804 0.92957 1.21050 0.95975 0.93279 0.99005 1.20626 1.03742 0.97700 0.96257 1.19393 0.93619 0.85456 0.95660 1.86125 1.71134 1.35391 1.30757 1.22542 1.01801 0.92851 0.85496 1.20762 0.79563 0.86131 0.84820 1.90670 1.58371 1.71639 1.25579 1.45953 1.56445 1.23440 1.08725 1.18755 0.88985 0.81856 0.96297 0.96084 1.22314 0.97984 1.00985 0.99554 1.22131 1.41802 1.00788 1.01144 0.93437 1.26652 0.92264 0.95964 1.04910 1.70965 1.43365 1.41605 0.99106 0.83771 0.78386 0.76253 0.72973 1.20544 1.20027 1.18026 1.21502 1.05267 0.99108 0.96952 1.21113 0.95838 0.93715 0.98760 0.86944 0.90981 0.86950 0.86539 0.86462 0.91093 0.91195 0.83441 0.85592 0.86335 0.86159 0.75491 0.92558 0.92947 0.94535 0.92845 0.83618 0.83517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -0.88 10.26 71.24 0.73 -0.15 16 2 C 0.36 3.75 7.27 29.10 0.21 3.96 16 3 O -0.51 -10.06 16.71 -1.43 -0.02 -10.08 16 4 C -0.17 -1.23 5.62 29.85 0.17 -1.06 16 5 C -0.06 -0.76 4.63 29.85 0.14 -0.63 16 6 C -0.12 -1.80 5.13 -19.85 -0.10 -1.90 16 7 C -0.08 -1.24 9.69 22.25 0.22 -1.02 16 8 C -0.16 -3.62 9.99 22.36 0.22 -3.40 16 9 C 0.10 2.52 6.69 22.50 0.15 2.67 16 10 O -0.32 -9.75 9.67 -73.42 -0.71 -10.46 16 11 C 0.05 1.31 5.22 71.24 0.37 1.68 16 12 C 0.50 18.58 7.87 87.66 0.69 19.27 16 13 O -0.58 -27.38 16.16 16.02 0.26 -27.12 16 14 N -0.69 -26.36 5.07 -446.11 -2.26 -28.62 16 15 C 0.25 11.52 2.16 44.24 0.10 11.62 16 16 H 0.02 1.10 6.15 -2.38 -0.01 1.08 16 17 C -0.15 -6.57 9.20 71.98 0.66 -5.91 16 18 C -0.62 -32.82 8.95 25.60 0.23 -32.59 16 19 H 0.05 2.61 7.96 -2.91 -0.02 2.59 16 20 C 0.00 0.27 5.19 84.66 0.44 0.71 16 21 N -0.92 -53.87 13.70 21.45 0.29 -53.57 16 22 Si 1.06 49.76 26.44 68.60 1.81 51.58 16 23 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 24 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 25 H -0.26 -11.15 6.14 99.48 0.61 -10.54 16 26 C -0.21 -3.87 9.04 22.37 0.20 -3.66 16 27 C -0.08 -1.15 9.69 22.26 0.22 -0.93 16 28 H 0.11 0.07 8.14 -2.38 -0.02 0.05 16 29 H 0.07 0.47 8.12 -2.38 -0.02 0.45 16 30 H 0.11 0.07 8.14 -2.39 -0.02 0.05 16 31 H 0.12 0.54 8.14 -2.39 -0.02 0.52 16 32 H 0.12 0.52 8.14 -2.38 -0.02 0.50 16 33 H 0.07 0.94 8.04 -2.39 -0.02 0.92 16 34 H 0.07 0.94 8.04 -2.39 -0.02 0.93 16 35 H 0.15 1.72 8.06 -2.91 -0.02 1.70 16 36 H 0.13 2.80 8.06 -2.91 -0.02 2.78 16 37 H 0.12 2.32 7.65 -2.38 -0.02 2.30 16 38 H 0.12 2.29 7.67 -2.39 -0.02 2.27 16 39 H 0.41 12.92 8.52 -92.71 -0.79 12.13 16 40 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 41 H 0.05 2.36 5.47 -2.39 -0.01 2.34 16 42 H 0.04 1.53 8.14 -2.38 -0.02 1.51 16 43 H 0.26 15.33 8.73 -92.71 -0.81 14.52 16 44 H 0.15 2.08 6.30 -2.91 -0.02 2.06 16 45 H 0.15 1.48 8.06 -2.91 -0.02 1.46 16 Total: -1.00 -75.85 380.40 4.09 -71.76 By element: Atomic # 1 Polarization: 17.80 SS G_CDS: 0.08 Total: 17.87 kcal Atomic # 6 Polarization: -16.00 SS G_CDS: 4.64 Total: -11.36 kcal Atomic # 7 Polarization: -80.23 SS G_CDS: -1.97 Total: -82.20 kcal Atomic # 8 Polarization: -47.18 SS G_CDS: -0.47 Total: -47.66 kcal Atomic # 14 Polarization: 49.76 SS G_CDS: 1.81 Total: 51.58 kcal Total: -75.85 4.09 -71.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194624652.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.722 kcal (2) G-P(sol) polarization free energy of solvation -75.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds