Wall clock time and date at job start Tue Mar 31 2020 12:55:56
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 H 1.09006 * 109.46858 * 2 1
4 4 C 1.50703 * 109.47109 * 119.99901 * 2 1 3
5 5 H 1.07989 * 119.99917 * 85.87464 * 4 2 1
6 6 C 1.37877 * 119.99665 * 265.87433 * 4 2 1
7 7 N 1.31518 * 119.99718 * 177.64134 * 6 4 2
8 8 Si 1.86798 * 120.00409 * 357.63523 * 6 4 2
9 9 H 1.48496 * 109.47284 * 274.92510 * 8 6 4
10 10 H 1.48504 * 109.47089 * 34.92555 * 8 6 4
11 11 H 1.48500 * 109.47336 * 154.92335 * 8 6 4
12 12 N 1.46493 * 109.47181 * 240.00037 * 2 1 3
13 13 C 1.34777 * 120.00036 * 84.99862 * 12 2 1
14 14 O 1.21276 * 120.00272 * 0.02562 * 13 12 2
15 15 C 1.50707 * 120.00000 * 179.97438 * 13 12 2
16 16 O 1.42894 * 109.46981 * 179.97438 * 15 13 12
17 17 C 1.36000 * 116.99744 * 179.97438 * 16 15 13
18 18 C 1.38374 * 119.92588 * 359.73397 * 17 16 15
19 19 C 1.38240 * 120.28259 * 179.77997 * 18 17 16
20 20 C 1.38345 * 119.81087 * 0.65139 * 19 18 17
21 21 C 1.37836 * 120.07629 * 359.78973 * 20 19 18
22 22 C 1.38742 * 120.81848 * 359.60177 * 21 20 19
23 23 O 1.36227 * 111.24555 * 181.02535 * 22 21 20
24 24 C 1.43787 * 109.17667 * 340.67162 * 23 22 21
25 25 C 1.53004 * 110.75705 * 269.54870 * 24 23 22
26 26 C 1.52995 * 110.91206 * 146.25476 * 24 23 22
27 27 C 1.51657 * 132.12380 * 179.09640 * 21 20 19
28 28 H 1.09000 * 109.47341 * 296.13363 * 1 2 3
29 29 H 1.08996 * 109.47554 * 56.13746 * 1 2 3
30 30 H 1.09000 * 109.47220 * 176.13458 * 1 2 3
31 31 H 0.96999 * 119.99984 * 180.02562 * 7 6 4
32 32 H 0.96997 * 119.99861 * 264.99760 * 12 2 1
33 33 H 1.08998 * 109.47225 * 300.00636 * 15 13 12
34 34 H 1.09006 * 109.46396 * 60.00406 * 15 13 12
35 35 H 1.08004 * 119.85613 * 359.97438 * 18 17 16
36 36 H 1.08005 * 120.09606 * 180.41292 * 19 18 17
37 37 H 1.07999 * 119.96819 * 179.76607 * 20 19 18
38 38 H 1.08998 * 109.47195 * 173.33967 * 25 24 23
39 39 H 1.08998 * 109.46674 * 293.34360 * 25 24 23
40 40 H 1.09002 * 109.46810 * 53.33625 * 25 24 23
41 41 H 1.09004 * 109.47124 * 306.57359 * 26 24 23
42 42 H 1.09004 * 109.47120 * 66.56747 * 26 24 23
43 43 H 1.09003 * 109.47414 * 186.56840 * 26 24 23
44 44 H 1.09002 * 110.93115 * 313.77046 * 27 21 20
45 45 H 1.09001 * 110.93344 * 77.43532 * 27 21 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 6 2.0323 -0.7104 1.2305
5 1 2.1489 -1.7840 1.2244
6 6 2.3431 0.0104 2.3640
7 7 2.7371 -0.6136 3.4526
8 14 2.2046 1.8732 2.3536
9 1 3.4567 2.4597 1.8119
10 1 1.0584 2.2796 1.5013
11 1 1.9885 2.3614 3.7393
12 7 2.0183 -0.6906 -1.1961
13 6 2.1470 -0.0182 -2.3571
14 8 1.8590 1.1586 -2.4115
15 6 2.6499 -0.7285 -3.5875
16 8 2.6973 0.1895 -4.6815
17 6 3.1330 -0.2947 -5.8753
18 6 3.5105 -1.6214 -5.9859
19 6 3.9501 -2.1225 -7.1969
20 6 4.0254 -1.2898 -8.2992
21 6 3.6589 0.0345 -8.1908
22 6 3.2036 0.5497 -6.9857
23 8 2.8757 1.8666 -7.1043
24 6 3.5138 2.4088 -8.2732
25 6 4.8905 2.9782 -7.9246
26 6 2.6369 3.4782 -8.9275
27 6 3.6490 1.1725 -9.1932
28 1 -0.3634 0.4526 0.9226
29 1 -0.3634 0.5726 -0.8533
30 1 -0.3633 -1.0253 -0.0693
31 1 2.9554 -0.1065 4.2502
32 1 2.2490 -1.6317 -1.1525
33 1 3.6492 -1.1204 -3.3978
34 1 1.9776 -1.5508 -3.8325
35 1 3.4584 -2.2689 -5.1230
36 1 4.2377 -3.1601 -7.2814
37 1 4.3721 -1.6777 -9.2456
38 1 5.4032 3.2750 -8.8395
39 1 4.7710 3.8468 -7.2769
40 1 5.4779 2.2185 -7.4089
41 1 1.6441 3.0692 -9.1151
42 1 2.5558 4.3383 -8.2628
43 1 3.0860 3.7892 -9.8708
44 1 4.5827 1.2050 -9.7547
45 1 2.7947 1.0919 -9.8654
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000194670827.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:55:56
Heat of formation + Delta-G solvation = -83.307353 kcal
Electronic energy + Delta-G solvation = -26518.757641 eV
Core-core repulsion = 22695.080870 eV
Total energy + Delta-G solvation = -3823.676771 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 319.162 amu
Computer time = 0.60 seconds
Orbital eigenvalues (eV)
-41.55480 -39.71319 -38.50640 -36.84097 -34.87516 -33.90517 -32.42233 -31.48405
-30.58920 -29.57637 -27.75741 -27.71880 -26.56844 -25.30823 -22.67495 -22.02882
-21.07653 -20.62264 -19.65907 -18.19503 -17.54863 -17.08547 -16.50139 -16.28891
-15.85087 -15.73269 -15.35073 -15.06498 -14.70272 -14.06789 -13.98811 -13.88674
-13.43096 -13.37139 -13.07705 -12.75924 -12.68886 -12.53304 -12.38999 -12.32311
-12.28907 -12.01504 -11.60384 -11.54223 -11.50851 -11.18607 -11.12221 -11.00229
-10.87515 -10.83268 -10.55626 -9.89586 -9.21557 -9.18554 -8.74767 -8.71740
-8.16366 -7.94224 -6.25674 -4.29963 1.04554 1.25638 2.84989 3.03279
3.14995 3.27597 3.34292 3.42354 3.50529 4.04746 4.16833 4.26236
4.31621 4.51733 4.69633 4.71670 4.77663 4.98147 5.04760 5.09694
5.14416 5.18972 5.20580 5.28641 5.31068 5.32240 5.40505 5.47967
5.59301 5.60771 5.80680 5.91495 6.06024 6.09697 6.25561 6.30448
6.44497 6.52162 6.65847 6.82324 6.91259 7.14536 7.32840 7.43008
7.50325 8.08854 8.49807 8.73756 8.89520 9.35971 10.85835
Molecular weight = 319.16amu
Principal moments of inertia in cm(-1)
A = 0.019415 B = 0.002772 C = 0.002564
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1441.840490 B =10097.664057 C =10916.733115
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.149 4.149
2 C 0.234 3.766
3 H 0.050 0.950
4 C -0.531 4.531
5 H 0.080 0.920
6 C 0.082 3.918
7 N -0.888 5.888
8 Si 0.873 3.127
9 H -0.272 1.272
10 H -0.259 1.259
11 H -0.285 1.285
12 N -0.700 5.700
13 C 0.503 3.497
14 O -0.534 6.534
15 C 0.038 3.962
16 O -0.281 6.281
17 C 0.118 3.882
18 C -0.180 4.180
19 C -0.107 4.107
20 C -0.113 4.113
21 C -0.139 4.139
22 C 0.080 3.920
23 O -0.283 6.283
24 C 0.098 3.902
25 C -0.163 4.163
26 C -0.141 4.141
27 C -0.099 4.099
28 H 0.056 0.944
29 H 0.030 0.970
30 H 0.046 0.954
31 H 0.268 0.732
32 H 0.394 0.606
33 H 0.090 0.910
34 H 0.088 0.912
35 H 0.139 0.861
36 H 0.131 0.869
37 H 0.125 0.875
38 H 0.073 0.927
39 H 0.070 0.930
40 H 0.063 0.937
41 H 0.067 0.933
42 H 0.070 0.930
43 H 0.077 0.923
44 H 0.092 0.908
45 H 0.092 0.908
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 3.835 -0.620 -27.213 27.489
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.208 4.208
2 C 0.132 3.868
3 H 0.068 0.932
4 C -0.569 4.569
5 H 0.098 0.902
6 C -0.123 4.123
7 N -0.525 5.525
8 Si 0.700 3.300
9 H -0.198 1.198
10 H -0.184 1.184
11 H -0.211 1.211
12 N -0.351 5.351
13 C 0.286 3.714
14 O -0.410 6.410
15 C -0.041 4.041
16 O -0.193 6.193
17 C 0.072 3.928
18 C -0.199 4.199
19 C -0.125 4.125
20 C -0.131 4.131
21 C -0.140 4.140
22 C 0.035 3.965
23 O -0.198 6.198
24 C 0.060 3.940
25 C -0.220 4.220
26 C -0.198 4.198
27 C -0.136 4.136
28 H 0.075 0.925
29 H 0.049 0.951
30 H 0.065 0.935
31 H 0.078 0.922
32 H 0.228 0.772
33 H 0.107 0.893
34 H 0.106 0.894
35 H 0.157 0.843
36 H 0.149 0.851
37 H 0.143 0.857
38 H 0.092 0.908
39 H 0.089 0.911
40 H 0.082 0.918
41 H 0.086 0.914
42 H 0.089 0.911
43 H 0.096 0.904
44 H 0.110 0.890
45 H 0.111 0.889
Dipole moment (debyes) X Y Z Total
from point charges 3.474 0.625 -26.824 27.055
hybrid contribution 0.255 0.064 0.194 0.327
sum 3.730 0.688 -26.630 26.899
Atomic orbital electron populations
1.22244 0.98467 1.00217 0.99891 1.19135 0.90971 0.94341 0.82385
0.93190 1.20989 1.45515 0.95798 0.94615 0.90229 1.24929 0.93464
0.98681 0.95234 1.69875 1.43971 1.36314 1.02304 0.86904 0.80018
0.85673 0.77411 1.19787 1.18366 1.21106 1.46519 1.65363 1.13930
1.09258 1.19963 0.79458 0.87767 0.84217 1.90704 1.49925 1.15699
1.84721 1.22661 1.02657 0.92631 0.86149 1.86301 1.80652 1.36977
1.15419 1.18347 0.98741 0.91612 0.84142 1.21048 1.05446 0.93327
1.00081 1.20815 1.00109 0.99719 0.91843 1.20185 1.02184 0.91527
0.99192 1.20583 1.04268 0.95581 0.93562 1.18640 1.00822 0.85094
0.91969 1.87046 1.66341 1.19928 1.46488 1.22743 0.93546 0.94041
0.83655 1.22202 0.95031 1.02213 1.02567 1.21830 0.99688 0.97841
1.00448 1.21907 1.03880 0.90797 0.97028 0.92532 0.95125 0.93510
0.92178 0.77224 0.89254 0.89405 0.84343 0.85114 0.85745 0.90848
0.91114 0.91802 0.91351 0.91090 0.90416 0.88958 0.88938
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -3.30 9.44 37.16 0.35 -2.95 16
2 C 0.23 5.59 2.16 -69.09 -0.15 5.44 16
3 H 0.05 1.32 4.89 -51.93 -0.25 1.06 16
4 C -0.53 -14.18 9.05 -34.44 -0.31 -14.49 16
5 H 0.08 2.21 8.06 -52.49 -0.42 1.79 16
6 C 0.08 2.28 5.47 -17.82 -0.10 2.18 16
7 N -0.89 -26.05 13.96 55.43 0.77 -25.28 16
8 Si 0.87 21.70 26.74 -169.99 -4.55 17.16 16
9 H -0.27 -6.82 7.11 56.52 0.40 -6.42 16
10 H -0.26 -6.36 6.87 56.52 0.39 -5.97 16
11 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16
12 N -0.70 -13.98 5.07 -54.93 -0.28 -14.26 16
13 C 0.50 10.05 7.87 -10.98 -0.09 9.96 16
14 O -0.53 -13.20 16.16 -14.35 -0.23 -13.43 16
15 C 0.04 0.57 5.22 36.01 0.19 0.75 16
16 O -0.28 -4.98 9.67 -41.02 -0.40 -5.38 16
17 C 0.12 1.75 6.71 -38.99 -0.26 1.49 16
18 C -0.18 -2.05 9.01 -39.53 -0.36 -2.41 16
19 C -0.11 -1.01 10.06 -39.54 -0.40 -1.41 16
20 C -0.11 -1.07 10.03 -39.69 -0.40 -1.47 16
21 C -0.14 -1.56 6.27 -104.11 -0.65 -2.21 16
22 C 0.08 1.17 6.83 -38.86 -0.27 0.90 16
23 O -0.28 -4.30 10.54 -20.47 -0.22 -4.52 16
24 C 0.10 1.00 1.26 -89.72 -0.11 0.89 16
25 C -0.16 -1.49 8.86 37.16 0.33 -1.16 16
26 C -0.14 -1.11 8.95 37.16 0.33 -0.78 16
27 C -0.10 -0.85 6.18 -26.52 -0.16 -1.01 16
28 H 0.06 1.26 7.92 -51.93 -0.41 0.85 16
29 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16
30 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16
31 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16
32 H 0.39 6.62 8.59 -40.82 -0.35 6.27 16
33 H 0.09 1.09 7.64 -51.93 -0.40 0.69 16
34 H 0.09 1.03 7.67 -51.93 -0.40 0.63 16
35 H 0.14 1.27 6.26 -52.48 -0.33 0.95 16
36 H 0.13 0.87 8.06 -52.48 -0.42 0.45 16
37 H 0.12 0.85 8.06 -52.49 -0.42 0.42 16
38 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16
39 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16
40 H 0.06 0.66 8.07 -51.93 -0.42 0.24 16
41 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16
42 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16
43 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16
44 H 0.09 0.59 7.92 -51.93 -0.41 0.18 16
45 H 0.09 0.68 7.92 -51.93 -0.41 0.27 16
LS Contribution 372.95 15.07 5.62 5.62
Total: -1.00 -34.98 372.95 -8.09 -43.06
By element:
Atomic # 1 Polarization: 10.04 SS G_CDS: -6.76 Total: 3.28 kcal
Atomic # 6 Polarization: -4.22 SS G_CDS: -2.05 Total: -6.27 kcal
Atomic # 7 Polarization: -40.03 SS G_CDS: 0.50 Total: -39.53 kcal
Atomic # 8 Polarization: -22.47 SS G_CDS: -0.84 Total: -23.32 kcal
Atomic # 14 Polarization: 21.70 SS G_CDS: -4.55 Total: 17.16 kcal
Total LS contribution 5.62 Total: 5.62 kcal
Total: -34.98 -8.09 -43.06 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000194670827.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -40.244 kcal
(2) G-P(sol) polarization free energy of solvation -34.978 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.222 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.085 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.063 kcal
(6) G-S(sol) free energy of system = (1) + (5) -83.307 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.60 seconds