Wall clock time and date at job start Tue Mar 31 2020 12:55:55
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 H 1.09006 * 109.46858 * 2 1
4 4 C 1.50703 * 109.47109 * 119.99901 * 2 1 3
5 5 H 1.07989 * 119.99917 * 85.87464 * 4 2 1
6 6 C 1.37877 * 119.99665 * 265.87433 * 4 2 1
7 7 N 1.31518 * 119.99718 * 177.64134 * 6 4 2
8 8 Si 1.86798 * 120.00409 * 357.63523 * 6 4 2
9 9 H 1.48496 * 109.47284 * 274.92510 * 8 6 4
10 10 H 1.48504 * 109.47089 * 34.92555 * 8 6 4
11 11 H 1.48500 * 109.47336 * 154.92335 * 8 6 4
12 12 N 1.46493 * 109.47181 * 240.00037 * 2 1 3
13 13 C 1.34777 * 120.00036 * 84.99862 * 12 2 1
14 14 O 1.21276 * 120.00272 * 0.02562 * 13 12 2
15 15 C 1.50707 * 120.00000 * 179.97438 * 13 12 2
16 16 O 1.42894 * 109.46981 * 179.97438 * 15 13 12
17 17 C 1.36000 * 116.99744 * 179.97438 * 16 15 13
18 18 C 1.38374 * 119.92588 * 359.73397 * 17 16 15
19 19 C 1.38240 * 120.28259 * 179.77997 * 18 17 16
20 20 C 1.38345 * 119.81087 * 0.65139 * 19 18 17
21 21 C 1.37836 * 120.07629 * 359.78973 * 20 19 18
22 22 C 1.38742 * 120.81848 * 359.60177 * 21 20 19
23 23 O 1.36227 * 111.24555 * 181.02535 * 22 21 20
24 24 C 1.43787 * 109.17667 * 340.67162 * 23 22 21
25 25 C 1.53004 * 110.75705 * 269.54870 * 24 23 22
26 26 C 1.52995 * 110.91206 * 146.25476 * 24 23 22
27 27 C 1.51657 * 132.12380 * 179.09640 * 21 20 19
28 28 H 1.09000 * 109.47341 * 296.13363 * 1 2 3
29 29 H 1.08996 * 109.47554 * 56.13746 * 1 2 3
30 30 H 1.09000 * 109.47220 * 176.13458 * 1 2 3
31 31 H 0.96999 * 119.99984 * 180.02562 * 7 6 4
32 32 H 0.96997 * 119.99861 * 264.99760 * 12 2 1
33 33 H 1.08998 * 109.47225 * 300.00636 * 15 13 12
34 34 H 1.09006 * 109.46396 * 60.00406 * 15 13 12
35 35 H 1.08004 * 119.85613 * 359.97438 * 18 17 16
36 36 H 1.08005 * 120.09606 * 180.41292 * 19 18 17
37 37 H 1.07999 * 119.96819 * 179.76607 * 20 19 18
38 38 H 1.08998 * 109.47195 * 173.33967 * 25 24 23
39 39 H 1.08998 * 109.46674 * 293.34360 * 25 24 23
40 40 H 1.09002 * 109.46810 * 53.33625 * 25 24 23
41 41 H 1.09004 * 109.47124 * 306.57359 * 26 24 23
42 42 H 1.09004 * 109.47120 * 66.56747 * 26 24 23
43 43 H 1.09003 * 109.47414 * 186.56840 * 26 24 23
44 44 H 1.09002 * 110.93115 * 313.77046 * 27 21 20
45 45 H 1.09001 * 110.93344 * 77.43532 * 27 21 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 6 2.0323 -0.7104 1.2305
5 1 2.1489 -1.7840 1.2244
6 6 2.3431 0.0104 2.3640
7 7 2.7371 -0.6136 3.4526
8 14 2.2046 1.8732 2.3536
9 1 3.4567 2.4597 1.8119
10 1 1.0584 2.2796 1.5013
11 1 1.9885 2.3614 3.7393
12 7 2.0183 -0.6906 -1.1961
13 6 2.1470 -0.0182 -2.3571
14 8 1.8590 1.1586 -2.4115
15 6 2.6499 -0.7285 -3.5875
16 8 2.6973 0.1895 -4.6815
17 6 3.1330 -0.2947 -5.8753
18 6 3.5105 -1.6214 -5.9859
19 6 3.9501 -2.1225 -7.1969
20 6 4.0254 -1.2898 -8.2992
21 6 3.6589 0.0345 -8.1908
22 6 3.2036 0.5497 -6.9857
23 8 2.8757 1.8666 -7.1043
24 6 3.5138 2.4088 -8.2732
25 6 4.8905 2.9782 -7.9246
26 6 2.6369 3.4782 -8.9275
27 6 3.6490 1.1725 -9.1932
28 1 -0.3634 0.4526 0.9226
29 1 -0.3634 0.5726 -0.8533
30 1 -0.3633 -1.0253 -0.0693
31 1 2.9554 -0.1065 4.2502
32 1 2.2490 -1.6317 -1.1525
33 1 3.6492 -1.1204 -3.3978
34 1 1.9776 -1.5508 -3.8325
35 1 3.4584 -2.2689 -5.1230
36 1 4.2377 -3.1601 -7.2814
37 1 4.3721 -1.6777 -9.2456
38 1 5.4032 3.2750 -8.8395
39 1 4.7710 3.8468 -7.2769
40 1 5.4779 2.2185 -7.4089
41 1 1.6441 3.0692 -9.1151
42 1 2.5558 4.3383 -8.2628
43 1 3.0860 3.7892 -9.8708
44 1 4.5827 1.2050 -9.7547
45 1 2.7947 1.0919 -9.8654
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000194670827.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:55:55
Heat of formation + Delta-G solvation = -106.771330 kcal
Electronic energy + Delta-G solvation = -26519.775116 eV
Core-core repulsion = 22695.080870 eV
Total energy + Delta-G solvation = -3824.694245 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 319.162 amu
Computer time = 0.69 seconds
Orbital eigenvalues (eV)
-42.39012 -41.04068 -39.83736 -37.78186 -36.72783 -34.69099 -34.44854 -32.27106
-32.21004 -30.67176 -28.86728 -28.42023 -27.42198 -27.31255 -23.54368 -23.33437
-22.22318 -21.64075 -21.31402 -19.53332 -18.94535 -18.25453 -17.67208 -17.43370
-17.17570 -17.11216 -16.53530 -16.03623 -15.91926 -15.53394 -15.26715 -14.88293
-14.70276 -14.56311 -14.31391 -14.19187 -13.93013 -13.63521 -13.53842 -13.30238
-13.12849 -13.10625 -12.94090 -12.85398 -12.76704 -12.49343 -12.41636 -12.27773
-12.08300 -11.90731 -11.79751 -11.61801 -11.26028 -10.92969 -10.81835 -9.93116
-9.51733 -8.87047 -8.41926 -6.47945 0.24064 0.40589 1.25894 1.31622
1.42399 1.58965 1.66221 2.24382 2.26159 2.69513 2.73448 3.02003
3.42695 3.53690 3.68460 3.83756 3.95301 4.02166 4.05743 4.08747
4.10670 4.30713 4.41118 4.41997 4.60337 4.63680 4.67429 4.69917
4.70190 4.78314 4.82799 4.89271 4.96183 5.05158 5.14828 5.23633
5.25170 5.31597 5.35491 5.41530 5.47760 5.64417 5.73506 5.93163
6.09702 6.47916 6.56832 6.79581 7.17434 7.35343 8.72716
Molecular weight = 319.16amu
Principal moments of inertia in cm(-1)
A = 0.019415 B = 0.002772 C = 0.002564
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1441.840490 B =10097.664057 C =10916.733115
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.143 4.143
2 C 0.235 3.765
3 H 0.025 0.975
4 C -0.524 4.524
5 H 0.064 0.936
6 C 0.037 3.963
7 N -0.927 5.927
8 Si 0.921 3.079
9 H -0.278 1.278
10 H -0.258 1.258
11 H -0.274 1.274
12 N -0.694 5.694
13 C 0.499 3.501
14 O -0.588 6.588
15 C 0.048 3.952
16 O -0.324 6.324
17 C 0.079 3.921
18 C -0.181 4.181
19 C -0.101 4.101
20 C -0.108 4.108
21 C -0.141 4.141
22 C 0.041 3.959
23 O -0.327 6.327
24 C 0.083 3.917
25 C -0.160 4.160
26 C -0.138 4.138
27 C -0.091 4.091
28 H 0.050 0.950
29 H 0.031 0.969
30 H 0.064 0.936
31 H 0.271 0.729
32 H 0.412 0.588
33 H 0.120 0.880
34 H 0.125 0.875
35 H 0.160 0.840
36 H 0.167 0.833
37 H 0.159 0.841
38 H 0.106 0.894
39 H 0.055 0.945
40 H 0.045 0.955
41 H 0.062 0.938
42 H 0.058 0.942
43 H 0.110 0.890
44 H 0.120 0.880
45 H 0.106 0.894
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 4.600 -2.119 -30.375 30.794
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.202 4.202
2 C 0.131 3.869
3 H 0.043 0.957
4 C -0.563 4.563
5 H 0.082 0.918
6 C -0.164 4.164
7 N -0.565 5.565
8 Si 0.746 3.254
9 H -0.203 1.203
10 H -0.182 1.182
11 H -0.199 1.199
12 N -0.345 5.345
13 C 0.286 3.714
14 O -0.468 6.468
15 C -0.029 4.029
16 O -0.238 6.238
17 C 0.034 3.966
18 C -0.199 4.199
19 C -0.119 4.119
20 C -0.126 4.126
21 C -0.142 4.142
22 C -0.004 4.004
23 O -0.243 6.243
24 C 0.046 3.954
25 C -0.217 4.217
26 C -0.195 4.195
27 C -0.128 4.128
28 H 0.069 0.931
29 H 0.050 0.950
30 H 0.083 0.917
31 H 0.081 0.919
32 H 0.248 0.752
33 H 0.137 0.863
34 H 0.143 0.857
35 H 0.177 0.823
36 H 0.184 0.816
37 H 0.177 0.823
38 H 0.125 0.875
39 H 0.075 0.925
40 H 0.064 0.936
41 H 0.081 0.919
42 H 0.077 0.923
43 H 0.129 0.871
44 H 0.138 0.862
45 H 0.124 0.876
Dipole moment (debyes) X Y Z Total
from point charges 4.246 -0.915 -30.007 30.320
hybrid contribution 0.050 0.459 1.056 1.152
sum 4.297 -0.456 -28.951 29.272
Atomic orbital electron populations
1.22138 0.96964 1.01385 0.99681 1.18897 0.92086 0.93006 0.82887
0.95674 1.21152 1.44419 0.95204 0.95488 0.91759 1.25529 0.93741
1.01957 0.95202 1.69953 1.45855 1.37678 1.03017 0.86150 0.79641
0.81854 0.77756 1.20345 1.18238 1.19944 1.46189 1.65173 1.14658
1.08485 1.20797 0.78090 0.87186 0.85366 1.90676 1.52186 1.18278
1.85689 1.22613 1.04802 0.92008 0.83513 1.86214 1.81939 1.38765
1.16876 1.18814 1.01134 0.93381 0.83258 1.21366 1.04688 0.92062
1.01812 1.21299 0.98414 1.01334 0.90877 1.20673 1.00510 0.90677
1.00693 1.21006 1.03302 0.96898 0.92967 1.19157 1.02563 0.85260
0.93437 1.86986 1.67644 1.20901 1.48790 1.23133 0.93943 0.95318
0.82997 1.22206 0.94819 1.00994 1.03676 1.21874 0.99458 0.96726
1.01459 1.21975 1.05845 0.88617 0.96350 0.93072 0.94971 0.91666
0.91925 0.75179 0.86265 0.85735 0.82300 0.81580 0.82301 0.87520
0.92538 0.93553 0.91871 0.92311 0.87101 0.86161 0.87554
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -6.25 9.44 71.98 0.68 -5.57 16
2 C 0.23 11.25 2.16 44.25 0.10 11.34 16
3 H 0.03 1.35 4.89 -2.38 -0.01 1.34 16
4 C -0.52 -28.11 9.05 25.60 0.23 -27.87 16
5 H 0.06 3.59 8.06 -2.92 -0.02 3.57 16
6 C 0.04 2.06 5.47 84.65 0.46 2.52 16
7 N -0.93 -54.90 13.96 21.45 0.30 -54.60 16
8 Si 0.92 45.28 26.74 68.60 1.83 47.11 16
9 H -0.28 -13.78 7.11 99.48 0.71 -13.07 16
10 H -0.26 -12.53 6.87 99.48 0.68 -11.84 16
11 H -0.27 -12.87 7.11 99.48 0.71 -12.17 16
12 N -0.69 -27.30 5.07 -446.10 -2.26 -29.56 16
13 C 0.50 19.96 7.87 87.66 0.69 20.65 16
14 O -0.59 -29.95 16.16 16.02 0.26 -29.69 16
15 C 0.05 1.39 5.22 71.24 0.37 1.76 16
16 O -0.32 -11.71 9.67 -73.20 -0.71 -12.42 16
17 C 0.08 2.34 6.71 22.65 0.15 2.50 16
18 C -0.18 -3.70 9.01 22.30 0.20 -3.50 16
19 C -0.10 -1.54 10.06 22.30 0.22 -1.32 16
20 C -0.11 -1.66 10.03 22.20 0.22 -1.43 16
21 C -0.14 -2.89 6.27 -19.53 -0.12 -3.02 16
22 C 0.04 1.21 6.83 22.74 0.16 1.36 16
23 O -0.33 -10.42 10.54 -96.13 -1.01 -11.44 16
24 C 0.08 1.66 1.26 -10.21 -0.01 1.65 16
25 C -0.16 -2.86 8.86 71.98 0.64 -2.22 16
26 C -0.14 -2.09 8.95 71.98 0.64 -1.45 16
27 C -0.09 -1.34 6.18 30.73 0.19 -1.15 16
28 H 0.05 2.26 7.92 -2.39 -0.02 2.24 16
29 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16
30 H 0.06 2.57 8.14 -2.39 -0.02 2.55 16
31 H 0.27 15.12 8.31 -92.71 -0.77 14.35 16
32 H 0.41 13.25 8.59 -92.71 -0.80 12.45 16
33 H 0.12 2.66 7.64 -2.39 -0.02 2.64 16
34 H 0.13 2.61 7.67 -2.38 -0.02 2.59 16
35 H 0.16 2.40 6.26 -2.91 -0.02 2.38 16
36 H 0.17 1.33 8.06 -2.91 -0.02 1.31 16
37 H 0.16 1.33 8.06 -2.91 -0.02 1.30 16
38 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16
39 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16
40 H 0.05 0.97 8.07 -2.39 -0.02 0.95 16
41 H 0.06 1.00 8.14 -2.38 -0.02 0.98 16
42 H 0.06 1.01 8.14 -2.38 -0.02 0.99 16
43 H 0.11 0.88 8.14 -2.39 -0.02 0.86 16
44 H 0.12 1.06 7.92 -2.39 -0.02 1.05 16
45 H 0.11 1.26 7.92 -2.39 -0.02 1.24 16
Total: -1.00 -80.51 372.95 3.41 -77.09
By element:
Atomic # 1 Polarization: 19.07 SS G_CDS: 0.18 Total: 19.25 kcal
Atomic # 6 Polarization: -10.57 SS G_CDS: 4.82 Total: -5.75 kcal
Atomic # 7 Polarization: -82.20 SS G_CDS: -1.96 Total: -84.16 kcal
Atomic # 8 Polarization: -52.08 SS G_CDS: -1.46 Total: -53.55 kcal
Atomic # 14 Polarization: 45.28 SS G_CDS: 1.83 Total: 47.11 kcal
Total: -80.51 3.41 -77.09 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000194670827.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -29.680 kcal
(2) G-P(sol) polarization free energy of solvation -80.506 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.186 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.414 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.092 kcal
(6) G-S(sol) free energy of system = (1) + (5) -106.771 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.69 seconds