Wall clock time and date at job start Tue Mar 31 2020 12:55:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09002 * 109.47140 * 2 1 4 4 C 1.50698 * 109.47313 * 239.99507 * 2 1 3 5 5 H 1.07999 * 120.00079 * 275.00499 * 4 2 1 6 6 C 1.37875 * 119.99960 * 95.00606 * 4 2 1 7 7 N 1.31518 * 120.00004 * 184.91829 * 6 4 2 8 8 Si 1.86801 * 120.00173 * 4.91379 * 6 4 2 9 9 H 1.48494 * 109.47115 * 84.83255 * 8 6 4 10 10 H 1.48501 * 109.47463 * 204.83709 * 8 6 4 11 11 H 1.48506 * 109.47069 * 324.83463 * 8 6 4 12 12 N 1.46503 * 109.46707 * 119.99895 * 2 1 3 13 13 C 1.34784 * 119.99767 * 274.99875 * 12 2 1 14 14 O 1.21282 * 119.99603 * 0.02562 * 13 12 2 15 15 C 1.50693 * 119.99795 * 180.02562 * 13 12 2 16 16 O 1.42902 * 109.46862 * 180.02562 * 15 13 12 17 17 C 1.36002 * 116.99938 * 180.02562 * 16 15 13 18 18 C 1.38373 * 119.92390 * 359.96936 * 17 16 15 19 19 C 1.38238 * 120.28110 * 180.02562 * 18 17 16 20 20 C 1.38351 * 119.81237 * 0.19903 * 19 18 17 21 21 C 1.37838 * 120.07622 * 0.02562 * 20 19 18 22 22 C 1.38735 * 120.81332 * 359.59478 * 21 20 19 23 23 O 1.36233 * 111.24469 * 181.04620 * 22 21 20 24 24 C 1.43785 * 109.17514 * 340.65234 * 23 22 21 25 25 C 1.52995 * 110.75334 * 269.54871 * 24 23 22 26 26 C 1.53002 * 110.90698 * 146.25771 * 24 23 22 27 27 C 1.51651 * 132.12656 * 179.08120 * 21 20 19 28 28 H 1.09004 * 109.46763 * 55.04389 * 1 2 3 29 29 H 1.08997 * 109.46893 * 175.03740 * 1 2 3 30 30 H 1.09000 * 109.47368 * 295.04178 * 1 2 3 31 31 H 0.97005 * 119.99682 * 180.02562 * 7 6 4 32 32 H 0.96992 * 120.00321 * 94.99768 * 12 2 1 33 33 H 1.09003 * 109.47010 * 60.00330 * 15 13 12 34 34 H 1.09001 * 109.47134 * 300.00023 * 15 13 12 35 35 H 1.07996 * 119.86025 * 0.03119 * 18 17 16 36 36 H 1.08002 * 120.09534 * 180.21802 * 19 18 17 37 37 H 1.08002 * 119.96647 * 179.97438 * 20 19 18 38 38 H 1.08999 * 109.46865 * 173.34058 * 25 24 23 39 39 H 1.08998 * 109.47118 * 293.33829 * 25 24 23 40 40 H 1.09000 * 109.47324 * 53.34171 * 25 24 23 41 41 H 1.08998 * 109.47352 * 306.56810 * 26 24 23 42 42 H 1.08994 * 109.47380 * 66.57057 * 26 24 23 43 43 H 1.09003 * 109.46713 * 186.56885 * 26 24 23 44 44 H 1.08996 * 110.93640 * 313.75283 * 27 21 20 45 45 H 1.09005 * 110.93573 * 77.42717 * 27 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.1355 -1.7856 -1.2289 6 6 2.3605 0.0119 -2.3579 7 7 2.7062 -0.6134 -3.4621 8 14 2.3138 1.8789 -2.3175 9 1 3.5993 2.3947 -1.7822 10 1 2.1061 2.3989 -3.6929 11 1 1.1988 2.3274 -1.4451 12 7 2.0183 -0.6906 1.1962 13 6 2.1470 -0.0182 2.3572 14 8 1.8581 1.1585 2.4116 15 6 2.6497 -0.7284 3.5875 16 8 2.6971 0.1898 4.6816 17 6 3.1327 -0.2944 5.8755 18 6 3.5042 -1.6226 5.9876 19 6 3.9476 -2.1226 7.1978 20 6 4.0157 -1.2917 8.3019 21 6 3.6421 0.0308 8.1953 22 6 3.2025 0.5498 6.9861 23 8 2.9071 1.8752 7.0960 24 6 2.7084 2.2014 8.4822 25 6 1.2386 2.0354 8.8729 26 6 3.1902 3.6220 8.7832 27 6 3.5900 1.1580 9.2084 28 1 -0.3633 0.5888 -0.8423 29 1 -0.3633 -1.0238 -0.0889 30 1 -0.3634 0.4350 0.9310 31 1 2.9373 -0.1051 -4.2553 32 1 2.2489 -1.6317 1.1528 33 1 3.6491 -1.1202 3.3980 34 1 1.9775 -1.5507 3.8326 35 1 3.4478 -2.2713 5.1261 36 1 4.2402 -3.1589 7.2811 37 1 4.3613 -1.6798 9.2486 38 1 1.1310 2.1720 9.9490 39 1 0.6374 2.7794 8.3503 40 1 0.9001 1.0364 8.5979 41 1 4.2203 3.7356 8.4454 42 1 2.5558 4.3389 8.2622 43 1 3.1378 3.8035 9.8568 44 1 3.1195 0.8278 10.1345 45 1 4.5866 1.5560 9.3999 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194670841.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:55:58 Heat of formation + Delta-G solvation = -106.738660 kcal Electronic energy + Delta-G solvation = -26519.372198 eV Core-core repulsion = 22694.679369 eV Total energy + Delta-G solvation = -3824.692829 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.39017 -41.03928 -39.83601 -37.78130 -36.72157 -34.68953 -34.44847 -32.27040 -32.20778 -30.66988 -28.86543 -28.41654 -27.42654 -27.31934 -23.54266 -23.32952 -22.22126 -21.63831 -21.31227 -19.53982 -18.94766 -18.25862 -17.65299 -17.48986 -17.18338 -17.02910 -16.58583 -16.03193 -15.90997 -15.42809 -15.40564 -14.83013 -14.69998 -14.55102 -14.36397 -14.18192 -13.94988 -13.63571 -13.51493 -13.30116 -13.11878 -13.08668 -12.93650 -12.84068 -12.76459 -12.51204 -12.43467 -12.27890 -12.08116 -11.90770 -11.79722 -11.61616 -11.27608 -10.91977 -10.80548 -9.92716 -9.51776 -8.87065 -8.42307 -6.48083 0.24022 0.40637 1.25667 1.31424 1.41991 1.59046 1.66309 2.24052 2.26441 2.68985 2.73613 3.01692 3.42697 3.53796 3.68646 3.84111 3.95430 4.02334 4.05756 4.08802 4.10810 4.30765 4.41365 4.42736 4.60980 4.63768 4.67266 4.69205 4.69924 4.78425 4.83094 4.89344 4.96243 5.05429 5.15063 5.23883 5.25155 5.32058 5.35489 5.41293 5.47729 5.64815 5.73514 5.93236 6.09664 6.47963 6.56771 6.79816 7.17386 7.35462 8.72318 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.019917 B = 0.002755 C = 0.002557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1405.505846 B =10159.870152 C =10946.580209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.234 3.766 3 H 0.026 0.974 4 C -0.524 4.524 5 H 0.064 0.936 6 C 0.037 3.963 7 N -0.926 5.926 8 Si 0.921 3.079 9 H -0.277 1.277 10 H -0.274 1.274 11 H -0.260 1.260 12 N -0.694 5.694 13 C 0.499 3.501 14 O -0.588 6.588 15 C 0.048 3.952 16 O -0.324 6.324 17 C 0.079 3.921 18 C -0.181 4.181 19 C -0.101 4.101 20 C -0.108 4.108 21 C -0.141 4.141 22 C 0.041 3.959 23 O -0.327 6.327 24 C 0.083 3.917 25 C -0.159 4.159 26 C -0.139 4.139 27 C -0.092 4.092 28 H 0.048 0.952 29 H 0.064 0.936 30 H 0.033 0.967 31 H 0.271 0.729 32 H 0.412 0.588 33 H 0.119 0.881 34 H 0.126 0.874 35 H 0.160 0.840 36 H 0.167 0.833 37 H 0.159 0.841 38 H 0.106 0.894 39 H 0.056 0.944 40 H 0.046 0.954 41 H 0.061 0.939 42 H 0.058 0.942 43 H 0.111 0.889 44 H 0.121 0.879 45 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.517 -2.682 30.950 31.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.130 3.870 3 H 0.044 0.956 4 C -0.563 4.563 5 H 0.083 0.917 6 C -0.164 4.164 7 N -0.564 5.564 8 Si 0.746 3.254 9 H -0.203 1.203 10 H -0.199 1.199 11 H -0.184 1.184 12 N -0.345 5.345 13 C 0.285 3.715 14 O -0.469 6.469 15 C -0.029 4.029 16 O -0.238 6.238 17 C 0.034 3.966 18 C -0.199 4.199 19 C -0.119 4.119 20 C -0.126 4.126 21 C -0.142 4.142 22 C -0.004 4.004 23 O -0.244 6.244 24 C 0.046 3.954 25 C -0.216 4.216 26 C -0.196 4.196 27 C -0.128 4.128 28 H 0.067 0.933 29 H 0.083 0.917 30 H 0.052 0.948 31 H 0.081 0.919 32 H 0.248 0.752 33 H 0.137 0.863 34 H 0.143 0.857 35 H 0.177 0.823 36 H 0.184 0.816 37 H 0.177 0.823 38 H 0.125 0.875 39 H 0.075 0.925 40 H 0.066 0.934 41 H 0.080 0.920 42 H 0.077 0.923 43 H 0.129 0.871 44 H 0.139 0.861 45 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 2.266 -1.451 30.553 30.672 hybrid contribution 0.078 0.463 -1.036 1.137 sum 2.345 -0.988 29.518 29.627 Atomic orbital electron populations 1.22119 0.96927 1.01617 0.99383 1.18931 0.92135 0.93062 0.82859 0.95589 1.21153 1.44339 0.95057 0.95704 0.91740 1.25531 0.93791 1.01946 0.95105 1.69958 1.46421 1.37609 1.02414 0.86148 0.79537 0.81980 0.77725 1.20262 1.19933 1.18442 1.46218 1.65148 1.14662 1.08497 1.20800 0.78105 0.87187 0.85373 1.90678 1.52188 1.18286 1.85699 1.22614 1.04798 0.92014 0.83519 1.86216 1.81868 1.38823 1.16890 1.18816 1.01202 0.92684 0.83892 1.21365 1.04693 0.92068 1.01799 1.21299 0.98395 1.01454 0.90777 1.20675 1.00503 0.90671 1.00702 1.21002 1.02634 0.96764 0.93770 1.19155 1.02323 0.84740 0.94187 1.86990 1.86203 1.21031 1.30131 1.23137 0.96658 0.97681 0.77928 1.22197 0.93770 1.01885 1.03755 1.21876 1.01625 0.91999 1.04064 1.21975 1.01794 0.91055 0.97990 0.93286 0.91738 0.94774 0.91912 0.75202 0.86317 0.85690 0.82302 0.81580 0.82302 0.87530 0.92474 0.93439 0.92017 0.92274 0.87079 0.86083 0.87692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.20 9.47 71.98 0.68 -5.51 16 2 C 0.23 11.20 2.22 44.25 0.10 11.29 16 3 H 0.03 1.39 4.73 -2.39 -0.01 1.38 16 4 C -0.52 -28.10 9.05 25.60 0.23 -27.87 16 5 H 0.06 3.60 8.06 -2.91 -0.02 3.58 16 6 C 0.04 2.10 5.47 84.65 0.46 2.56 16 7 N -0.93 -54.82 13.96 21.45 0.30 -54.52 16 8 Si 0.92 45.38 26.99 68.60 1.85 47.23 16 9 H -0.28 -13.74 7.11 99.48 0.71 -13.03 16 10 H -0.27 -12.89 7.11 99.48 0.71 -12.19 16 11 H -0.26 -12.71 6.82 99.48 0.68 -12.04 16 12 N -0.69 -27.32 5.07 -446.08 -2.26 -29.58 16 13 C 0.50 19.96 7.87 87.65 0.69 20.65 16 14 O -0.59 -29.97 16.16 16.00 0.26 -29.71 16 15 C 0.05 1.39 5.22 71.23 0.37 1.76 16 16 O -0.32 -11.72 9.67 -73.23 -0.71 -12.43 16 17 C 0.08 2.34 6.71 22.65 0.15 2.50 16 18 C -0.18 -3.71 9.01 22.30 0.20 -3.50 16 19 C -0.10 -1.54 10.06 22.30 0.22 -1.32 16 20 C -0.11 -1.66 10.03 22.20 0.22 -1.43 16 21 C -0.14 -2.90 6.27 -19.54 -0.12 -3.02 16 22 C 0.04 1.21 6.83 22.74 0.16 1.36 16 23 O -0.33 -10.44 10.54 -96.20 -1.01 -11.46 16 24 C 0.08 1.65 1.26 -10.21 -0.01 1.64 16 25 C -0.16 -2.75 8.86 71.98 0.64 -2.11 16 26 C -0.14 -2.11 8.95 71.98 0.64 -1.47 16 27 C -0.09 -1.35 6.18 30.73 0.19 -1.16 16 28 H 0.05 2.16 8.14 -2.38 -0.02 2.14 16 29 H 0.06 2.57 8.14 -2.39 -0.02 2.55 16 30 H 0.03 1.44 8.14 -2.39 -0.02 1.42 16 31 H 0.27 15.12 8.31 -92.70 -0.77 14.35 16 32 H 0.41 13.25 8.59 -92.71 -0.80 12.45 16 33 H 0.12 2.67 7.65 -2.39 -0.02 2.65 16 34 H 0.13 2.60 7.65 -2.39 -0.02 2.59 16 35 H 0.16 2.40 6.26 -2.91 -0.02 2.38 16 36 H 0.17 1.33 8.06 -2.91 -0.02 1.31 16 37 H 0.16 1.33 8.06 -2.91 -0.02 1.30 16 38 H 0.11 1.05 8.14 -2.39 -0.02 1.03 16 39 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 40 H 0.05 0.96 8.07 -2.39 -0.02 0.94 16 41 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 42 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 43 H 0.11 0.89 8.14 -2.39 -0.02 0.87 16 44 H 0.12 1.05 7.92 -2.39 -0.02 1.03 16 45 H 0.10 1.28 7.92 -2.38 -0.02 1.26 16 Total: -1.00 -80.49 373.30 3.43 -77.06 By element: Atomic # 1 Polarization: 18.86 SS G_CDS: 0.18 Total: 19.04 kcal Atomic # 6 Polarization: -10.46 SS G_CDS: 4.83 Total: -5.63 kcal Atomic # 7 Polarization: -82.14 SS G_CDS: -1.96 Total: -84.10 kcal Atomic # 8 Polarization: -52.13 SS G_CDS: -1.46 Total: -53.60 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 1.85 Total: 47.23 kcal Total: -80.49 3.43 -77.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194670841.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.677 kcal (2) G-P(sol) polarization free energy of solvation -80.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.062 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds