Wall clock time and date at job start Tue Mar 31 2020 12:54:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08990 * 109.47173 * 2 1 4 4 C 1.50705 * 109.47260 * 239.99668 * 2 1 3 5 5 H 1.07991 * 119.99976 * 240.00314 * 4 2 1 6 6 C 1.37885 * 119.99592 * 60.00206 * 4 2 1 7 7 N 1.31512 * 119.99797 * 359.97438 * 6 4 2 8 8 Si 1.86793 * 119.99577 * 179.97438 * 6 4 2 9 9 H 1.48508 * 109.47084 * 90.00586 * 8 6 4 10 10 H 1.48501 * 109.46906 * 209.99925 * 8 6 4 11 11 H 1.48496 * 109.47712 * 330.00110 * 8 6 4 12 12 N 1.46499 * 109.46843 * 120.00201 * 2 1 3 13 13 C 1.34784 * 119.99893 * 274.99901 * 12 2 1 14 14 O 1.21583 * 119.99453 * 359.97438 * 13 12 2 15 15 C 1.47604 * 119.99778 * 179.73013 * 13 12 2 16 16 C 1.39732 * 120.08823 * 359.71542 * 15 13 12 17 17 C 1.37699 * 119.90625 * 179.72418 * 16 15 13 18 18 C 1.39002 * 120.09238 * 0.58126 * 17 16 15 19 19 O 1.35704 * 119.91638 * 179.71837 * 18 17 16 20 20 C 1.42902 * 116.99905 * 359.97438 * 19 18 17 21 21 C 1.53000 * 109.47265 * 180.02562 * 20 19 18 22 22 H 1.08999 * 109.82214 * 305.56374 * 21 20 19 23 23 C 1.54375 * 109.83278 * 184.59046 * 21 20 19 24 24 C 1.55313 * 102.25356 * 219.12829 * 23 21 20 25 25 C 1.54949 * 100.94138 * 34.12881 * 24 23 21 26 26 O 1.43234 * 109.83464 * 66.44910 * 21 20 19 27 27 C 1.38996 * 120.17277 * 359.69935 * 18 17 16 28 28 C 1.37708 * 120.09115 * 359.97438 * 27 18 17 29 29 H 1.08998 * 109.47317 * 60.00174 * 1 2 3 30 30 H 1.09007 * 109.47248 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47450 * 300.00199 * 1 2 3 32 32 H 0.97008 * 119.99478 * 179.97438 * 7 6 4 33 33 H 0.97005 * 120.00261 * 95.00113 * 12 2 1 34 34 H 1.07991 * 120.04382 * 0.03485 * 16 15 13 35 35 H 1.08003 * 119.95619 * 180.30345 * 17 16 15 36 36 H 1.09003 * 109.47012 * 300.00294 * 20 19 18 37 37 H 1.08997 * 109.46973 * 59.99986 * 20 19 18 38 38 H 1.09000 * 110.84864 * 337.31455 * 23 21 20 39 39 H 1.09000 * 110.85207 * 100.93551 * 23 21 20 40 40 H 1.09001 * 111.12445 * 276.21186 * 24 23 21 41 41 H 1.08998 * 111.16339 * 152.06277 * 24 23 21 42 42 H 1.08990 * 110.30837 * 204.64220 * 25 24 23 43 43 H 1.09001 * 110.39172 * 82.51022 * 25 24 23 44 44 H 1.07995 * 119.95791 * 180.02562 * 27 18 17 45 45 H 1.08000 * 120.04607 * 180.02562 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6532 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4828 7 7 0.9428 0.8296 -2.6034 8 14 2.3225 -1.1196 -4.0079 9 1 1.3448 -2.1616 -4.4124 10 1 2.4873 -0.1403 -5.1120 11 1 3.6308 -1.7567 -3.7119 12 7 2.0182 -0.6907 1.1962 13 6 2.1469 -0.0183 2.3572 14 8 1.8582 1.1615 2.4116 15 6 2.6332 -0.7156 3.5638 16 6 2.9550 -2.0741 3.5060 17 6 3.4138 -2.7196 4.6325 18 6 3.5454 -2.0246 5.8290 19 8 3.9924 -2.6656 6.9384 20 6 4.3077 -4.0529 6.8033 21 6 4.7908 -4.5994 8.1483 22 1 5.6193 -3.9947 8.5170 23 6 5.2427 -6.0666 7.9856 24 6 4.7211 -6.7193 9.2948 25 6 3.4148 -5.9178 9.5228 26 8 3.7161 -4.5800 9.0950 27 6 3.2208 -0.6745 5.8921 28 6 2.7677 -0.0201 4.7683 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 0.7088 1.1612 -3.4845 33 1 2.2490 -1.6319 1.1526 34 1 2.8489 -2.6159 2.5778 35 1 3.6674 -3.7685 4.5874 36 1 3.4184 -4.5986 6.4880 37 1 5.0930 -4.1760 6.0575 38 1 4.7755 -6.5218 7.1123 39 1 6.3289 -6.1335 7.9248 40 1 5.4226 -6.5688 10.1154 41 1 4.5114 -7.7791 9.1498 42 1 3.1456 -5.9256 10.5790 43 1 2.6047 -6.3332 8.9234 44 1 3.3248 -0.1378 6.8234 45 1 2.5161 1.0290 4.8181 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194719626.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:54:22 Heat of formation + Delta-G solvation = -122.371345 kcal Electronic energy + Delta-G solvation = -25713.994371 eV Core-core repulsion = 21888.623658 eV Total energy + Delta-G solvation = -3825.370713 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.51154 -40.70783 -39.99768 -38.03518 -36.71707 -34.41968 -33.23882 -32.55547 -31.86617 -31.41296 -29.98476 -27.35349 -26.93888 -24.75880 -23.87951 -22.88457 -22.46824 -21.82887 -21.19850 -19.63353 -18.99824 -18.11567 -17.73165 -17.49075 -17.01164 -16.67113 -16.46877 -16.19491 -15.85922 -15.71173 -15.24371 -15.02096 -14.66559 -14.47602 -14.33319 -14.25154 -13.82084 -13.67530 -13.37169 -13.30107 -12.99988 -12.86170 -12.72230 -12.67789 -12.33339 -12.29908 -12.22536 -12.13946 -11.93640 -11.85427 -11.68918 -11.11346 -10.86338 -10.59787 -10.52627 -10.12145 -9.84993 -9.24650 -8.17305 -6.35235 -0.09504 0.30193 1.45433 1.46723 1.57311 1.93885 2.05312 2.34560 2.59934 2.86416 2.88611 3.13068 3.51884 3.66914 3.74169 3.87978 3.91289 3.94629 4.10452 4.13578 4.22333 4.33387 4.38884 4.41716 4.55329 4.62486 4.73351 4.81556 4.90213 4.91200 4.94006 4.94629 5.03913 5.06580 5.09594 5.20327 5.24959 5.35334 5.45378 5.57055 5.60882 5.68532 5.90342 6.06007 6.08352 6.35141 6.71482 6.92777 7.30968 7.50408 8.89255 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.021116 B = 0.002202 C = 0.002056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1325.681094 B =12710.944634 C =13618.354863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.269 3.731 3 H -0.001 1.001 4 C -0.546 4.546 5 H 0.075 0.925 6 C 0.012 3.988 7 N -0.917 5.917 8 Si 0.976 3.024 9 H -0.270 1.270 10 H -0.287 1.287 11 H -0.263 1.263 12 N -0.699 5.699 13 C 0.543 3.457 14 O -0.603 6.603 15 C -0.188 4.188 16 C -0.040 4.040 17 C -0.209 4.209 18 C 0.153 3.847 19 O -0.316 6.316 20 C 0.038 3.962 21 C 0.077 3.923 22 H 0.088 0.912 23 C -0.142 4.142 24 C -0.150 4.150 25 C 0.035 3.965 26 O -0.402 6.402 27 C -0.164 4.164 28 C -0.031 4.031 29 H 0.069 0.931 30 H 0.041 0.959 31 H 0.010 0.990 32 H 0.266 0.734 33 H 0.404 0.596 34 H 0.148 0.852 35 H 0.165 0.835 36 H 0.075 0.925 37 H 0.098 0.902 38 H 0.093 0.907 39 H 0.105 0.895 40 H 0.083 0.917 41 H 0.104 0.896 42 H 0.091 0.909 43 H 0.064 0.936 44 H 0.150 0.850 45 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.864 -20.050 22.853 31.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.165 3.835 3 H 0.017 0.983 4 C -0.584 4.584 5 H 0.093 0.907 6 C -0.188 4.188 7 N -0.556 5.556 8 Si 0.801 3.199 9 H -0.195 1.195 10 H -0.213 1.213 11 H -0.187 1.187 12 N -0.347 5.347 13 C 0.332 3.668 14 O -0.486 6.486 15 C -0.191 4.191 16 C -0.058 4.058 17 C -0.228 4.228 18 C 0.107 3.893 19 O -0.229 6.229 20 C -0.037 4.037 21 C 0.019 3.981 22 H 0.106 0.894 23 C -0.180 4.180 24 C -0.187 4.187 25 C -0.041 4.041 26 O -0.322 6.322 27 C -0.183 4.183 28 C -0.050 4.050 29 H 0.087 0.913 30 H 0.061 0.939 31 H 0.029 0.971 32 H 0.075 0.925 33 H 0.240 0.760 34 H 0.165 0.835 35 H 0.183 0.817 36 H 0.093 0.907 37 H 0.116 0.884 38 H 0.112 0.888 39 H 0.124 0.876 40 H 0.102 0.898 41 H 0.122 0.878 42 H 0.109 0.891 43 H 0.082 0.918 44 H 0.167 0.833 45 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 9.503 -18.879 22.984 31.225 hybrid contribution 0.013 -0.260 -1.198 1.226 sum 9.516 -19.139 21.786 30.520 Atomic orbital electron populations 1.21905 0.98206 0.99559 0.99592 1.18404 0.91230 0.92014 0.81808 0.98348 1.21516 1.32698 1.13612 0.90608 0.90678 1.25855 0.94889 0.95615 1.02456 1.70065 1.36941 1.23912 1.24646 0.85282 0.78992 0.77975 0.77692 1.19512 1.21304 1.18714 1.46194 1.64865 1.14149 1.09540 1.18807 0.77480 0.86305 0.84249 1.90685 1.53901 1.17985 1.86074 1.19893 1.09615 0.95773 0.93821 1.21315 0.93101 0.92023 0.99385 1.21403 1.07562 1.02120 0.91680 1.19350 0.91940 0.92010 0.86048 1.86080 1.79018 1.25530 1.32236 1.23661 1.01850 0.78714 0.99430 1.22928 0.89691 0.98164 0.87274 0.89432 1.23139 1.03809 0.91417 0.99610 1.23277 0.96461 1.01326 0.97648 1.23638 0.97878 0.81706 1.00851 1.88530 1.53919 1.28783 1.61014 1.20484 1.05544 0.92519 0.99704 1.21072 0.93338 1.00114 0.90497 0.91266 0.93941 0.97084 0.92520 0.75985 0.83453 0.81745 0.90699 0.88393 0.88849 0.87634 0.89790 0.87803 0.89126 0.91793 0.83252 0.85080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -7.01 9.26 71.98 0.67 -6.35 16 2 C 0.27 14.43 2.56 44.25 0.11 14.54 16 3 H 0.00 -0.09 7.58 -2.39 -0.02 -0.11 16 4 C -0.55 -29.23 8.73 25.60 0.22 -29.01 16 5 H 0.08 3.71 7.74 -2.92 -0.02 3.69 16 6 C 0.01 0.64 5.30 84.66 0.45 1.09 16 7 N -0.92 -53.20 11.32 21.45 0.24 -52.95 16 8 Si 0.98 42.00 29.54 68.60 2.03 44.03 16 9 H -0.27 -11.13 7.11 99.48 0.71 -10.43 16 10 H -0.29 -12.38 7.11 99.48 0.71 -11.67 16 11 H -0.26 -10.76 7.11 99.48 0.71 -10.06 16 12 N -0.70 -30.70 5.02 -449.20 -2.25 -32.95 16 13 C 0.54 23.95 7.73 86.71 0.67 24.62 16 14 O -0.60 -31.97 16.00 -3.98 -0.06 -32.04 16 15 C -0.19 -6.36 5.88 -20.08 -0.12 -6.48 16 16 C -0.04 -1.02 9.53 22.50 0.21 -0.81 16 17 C -0.21 -4.39 9.01 22.33 0.20 -4.19 16 18 C 0.15 3.59 6.70 22.64 0.15 3.75 16 19 O -0.32 -6.82 10.11 -87.79 -0.89 -7.71 16 20 C 0.04 0.53 4.27 71.98 0.31 0.83 16 21 C 0.08 0.98 3.81 31.06 0.12 1.10 16 22 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 23 C -0.14 -0.82 6.54 31.86 0.21 -0.61 16 24 C -0.15 -0.84 7.16 32.06 0.23 -0.61 16 25 C 0.04 0.38 7.78 72.65 0.57 0.94 16 26 O -0.40 -7.31 11.00 -146.53 -1.61 -8.92 16 27 C -0.16 -4.24 9.97 22.33 0.22 -4.01 16 28 C -0.03 -0.97 9.59 22.51 0.22 -0.75 16 29 H 0.07 3.93 6.07 -2.39 -0.01 3.91 16 30 H 0.04 2.03 8.14 -2.38 -0.02 2.01 16 31 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 32 H 0.27 14.53 8.31 -92.70 -0.77 13.76 16 33 H 0.40 14.66 6.56 -92.70 -0.61 14.06 16 34 H 0.15 3.24 6.39 -2.91 -0.02 3.22 16 35 H 0.17 2.24 6.28 -2.91 -0.02 2.22 16 36 H 0.07 0.95 7.65 -2.39 -0.02 0.93 16 37 H 0.10 0.90 7.65 -2.39 -0.02 0.88 16 38 H 0.09 0.35 7.85 -2.39 -0.02 0.34 16 39 H 0.11 0.29 8.14 -2.39 -0.02 0.27 16 40 H 0.08 0.43 8.14 -2.39 -0.02 0.41 16 41 H 0.10 0.24 8.14 -2.39 -0.02 0.22 16 42 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 43 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 44 H 0.15 3.30 8.06 -2.91 -0.02 3.28 16 45 H 0.13 4.27 7.64 -2.91 -0.02 4.25 16 Total: -1.00 -74.54 371.02 2.28 -72.26 By element: Atomic # 1 Polarization: 23.85 SS G_CDS: 0.39 Total: 24.25 kcal Atomic # 6 Polarization: -10.39 SS G_CDS: 4.44 Total: -5.95 kcal Atomic # 7 Polarization: -83.90 SS G_CDS: -2.01 Total: -85.91 kcal Atomic # 8 Polarization: -46.11 SS G_CDS: -2.56 Total: -48.67 kcal Atomic # 14 Polarization: 42.00 SS G_CDS: 2.03 Total: 44.03 kcal Total: -74.54 2.28 -72.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194719626.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.115 kcal (2) G-P(sol) polarization free energy of solvation -74.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.256 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds