Wall clock time and date at job start Tue Mar 31 2020 12:50:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09000 * 109.46903 * 2 1 4 4 C 1.50694 * 109.47489 * 239.99176 * 2 1 3 5 5 H 1.07996 * 120.00368 * 239.99883 * 4 2 1 6 6 C 1.37882 * 119.99658 * 60.00192 * 4 2 1 7 7 N 1.31514 * 119.99676 * 179.72303 * 6 4 2 8 8 Si 1.86800 * 120.00097 * 359.97438 * 6 4 2 9 9 H 1.48501 * 109.46938 * 269.72416 * 8 6 4 10 10 H 1.48500 * 109.46952 * 29.72419 * 8 6 4 11 11 H 1.48503 * 109.47103 * 149.72383 * 8 6 4 12 12 N 1.46902 * 109.47009 * 119.99046 * 2 1 3 13 13 C 1.46906 * 110.99617 * 58.95900 * 12 2 1 14 14 C 1.46894 * 111.00512 * 295.00312 * 12 2 1 15 15 C 1.52998 * 109.47444 * 189.99607 * 14 12 2 16 16 O 1.42899 * 109.47081 * 65.00088 * 15 14 12 17 17 C 1.35725 * 117.00381 * 179.97438 * 16 15 14 18 18 C 1.39033 * 119.88329 * 359.72695 * 17 16 15 19 19 C 1.37653 * 120.11665 * 179.76921 * 18 17 16 20 20 C 1.39996 * 119.88186 * 0.49940 * 19 18 17 21 21 C 1.46953 * 120.11459 * 179.72683 * 20 19 18 22 22 C 1.35089 * 119.99830 * 223.85777 * 21 20 19 23 23 C 1.41784 * 120.00605 * 10.67108 * 22 21 20 24 24 O 1.21650 * 119.99399 * 7.27362 * 23 22 21 25 25 O 1.34923 * 120.00362 * 187.28282 * 23 22 21 26 26 C 1.40002 * 119.76857 * 359.75391 * 20 19 18 27 27 C 1.37644 * 119.88733 * 359.97438 * 26 20 19 28 28 H 1.09003 * 109.46889 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47811 * 300.00728 * 1 2 3 30 30 H 1.09001 * 109.47211 * 60.00442 * 1 2 3 31 31 H 0.97008 * 119.99653 * 180.27781 * 7 6 4 32 32 H 1.08997 * 109.47099 * 60.00213 * 13 12 2 33 33 H 1.09003 * 109.46972 * 179.97438 * 13 12 2 34 34 H 1.08994 * 109.47183 * 299.99518 * 13 12 2 35 35 H 1.08996 * 109.47304 * 310.00122 * 14 12 2 36 36 H 1.09004 * 109.46950 * 69.99573 * 14 12 2 37 37 H 1.08995 * 109.47297 * 184.99928 * 15 14 12 38 38 H 1.08994 * 109.47624 * 305.00118 * 15 14 12 39 39 H 1.08001 * 119.94152 * 359.97438 * 18 17 16 40 40 H 1.07993 * 120.05907 * 180.27865 * 19 18 17 41 41 H 1.07993 * 120.00104 * 43.85776 * 21 20 19 42 42 H 1.08001 * 119.99788 * 190.66597 * 22 21 20 43 43 H 0.96708 * 114.00044 * 180.02562 * 25 23 22 44 44 H 1.08007 * 120.05429 * 180.02562 * 26 20 19 45 45 H 1.07997 * 119.94302 * 179.97438 * 27 26 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2303 5 1 2.6533 -1.5886 -1.1311 6 6 1.6993 -0.2396 -2.4826 7 7 2.1422 -0.8565 -3.5563 8 14 0.6248 1.2788 -2.6542 9 1 -0.8024 0.8718 -2.7066 10 1 0.8420 2.1732 -1.4889 11 1 0.9805 1.9984 -3.9036 12 7 2.0196 -0.6923 1.1996 13 6 1.5282 -2.0760 1.2462 14 6 1.6486 0.0394 2.4181 15 6 2.3787 -0.5659 3.6187 16 8 3.7858 -0.3655 3.4711 17 6 4.5837 -0.8459 4.4584 18 6 4.0193 -1.4934 5.5517 19 6 4.8242 -1.9867 6.5534 20 6 6.2128 -1.8264 6.4750 21 6 7.0765 -2.3458 7.5445 22 6 8.0936 -1.5926 8.0169 23 6 8.1940 -0.2266 7.6504 24 8 7.2972 0.3016 7.0208 25 8 9.2844 0.4872 7.9998 26 6 6.7756 -1.1690 5.3745 27 6 5.9621 -0.6844 4.3755 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3635 0.5139 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 1.9112 -0.5228 -4.4374 32 1 1.8763 -2.6150 0.3650 33 1 1.9059 -2.5656 2.1438 34 1 0.4385 -2.0741 1.2641 35 1 1.9296 1.0872 2.3125 36 1 0.5721 -0.0343 2.5726 37 1 2.0368 -0.0820 4.5336 38 1 2.1675 -1.6338 3.6719 39 1 2.9476 -1.6124 5.6135 40 1 4.3852 -2.4935 7.4000 41 1 6.8982 -3.3295 7.9527 42 1 8.8302 -2.0310 8.6738 43 1 9.2621 1.4084 7.7062 44 1 7.8463 -1.0431 5.3091 45 1 6.3953 -0.1767 3.5263 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000214003108.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:50:23 Heat of formation + Delta-G solvation = -50.833006 kcal Electronic energy + Delta-G solvation = -26214.133952 eV Core-core repulsion = 22391.865375 eV Total energy + Delta-G solvation = -3822.268578 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.82407 -39.86379 -38.07019 -37.12806 -36.11662 -33.89600 -32.77692 -31.23252 -30.62099 -29.26307 -28.29449 -25.60041 -25.22243 -24.91506 -23.07936 -22.18691 -21.28890 -19.67839 -19.19072 -18.49228 -18.16345 -16.99808 -16.66598 -16.08764 -15.91993 -15.67830 -15.09966 -14.94458 -14.46565 -14.26485 -14.15454 -13.98580 -13.54299 -13.41117 -13.21809 -12.89312 -12.81129 -12.49525 -12.25631 -11.91525 -11.84042 -11.67494 -11.48165 -11.37069 -11.16986 -10.95671 -10.75397 -10.70556 -10.42395 -10.17773 -10.00336 -9.88565 -9.50050 -9.02172 -8.84155 -8.57387 -7.79519 -7.32911 -6.04922 -4.02786 0.30850 1.43766 1.70282 2.80744 3.13857 3.25731 3.36696 3.38830 3.39354 3.81972 4.40641 4.46015 4.67582 4.73561 4.83692 4.89129 5.09444 5.15239 5.25029 5.27447 5.31457 5.45336 5.50952 5.59048 5.66870 5.81927 5.88118 6.02088 6.03893 6.09116 6.18336 6.20634 6.25379 6.29349 6.31656 6.40527 6.49288 6.53055 6.69411 6.77897 6.89445 7.20216 7.59399 7.65125 7.68157 7.92430 8.08097 8.67160 9.03037 9.57045 11.08220 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.024637 B = 0.002366 C = 0.002296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1136.206529 B =11833.376267 C =12192.818680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.181 3.819 3 H 0.041 0.959 4 C -0.501 4.501 5 H 0.083 0.917 6 C 0.069 3.931 7 N -0.900 5.900 8 Si 0.886 3.114 9 H -0.281 1.281 10 H -0.268 1.268 11 H -0.297 1.297 12 N -0.516 5.516 13 C 0.029 3.971 14 C 0.049 3.951 15 C 0.065 3.935 16 O -0.286 6.286 17 C 0.165 3.835 18 C -0.231 4.231 19 C -0.048 4.048 20 C -0.148 4.148 21 C 0.032 3.968 22 C -0.233 4.233 23 C 0.502 3.498 24 O -0.499 6.499 25 O -0.514 6.514 26 C 0.000 4.000 27 C -0.164 4.164 28 H 0.056 0.944 29 H 0.028 0.972 30 H 0.045 0.955 31 H 0.263 0.737 32 H 0.082 0.918 33 H 0.044 0.956 34 H 0.018 0.982 35 H 0.079 0.921 36 H 0.049 0.951 37 H 0.058 0.942 38 H 0.064 0.936 39 H 0.127 0.873 40 H 0.122 0.878 41 H 0.142 0.858 42 H 0.141 0.859 43 H 0.407 0.593 44 H 0.116 0.884 45 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.945 -1.881 25.449 26.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C 0.073 3.927 3 H 0.058 0.942 4 C -0.539 4.539 5 H 0.101 0.899 6 C -0.133 4.133 7 N -0.539 5.539 8 Si 0.717 3.283 9 H -0.209 1.209 10 H -0.193 1.193 11 H -0.224 1.224 12 N -0.239 5.239 13 C -0.119 4.119 14 C -0.080 4.080 15 C -0.010 4.010 16 O -0.198 6.198 17 C 0.118 3.882 18 C -0.250 4.250 19 C -0.066 4.066 20 C -0.148 4.148 21 C 0.014 3.986 22 C -0.252 4.252 23 C 0.348 3.652 24 O -0.390 6.390 25 O -0.325 6.325 26 C -0.018 4.018 27 C -0.183 4.183 28 H 0.075 0.925 29 H 0.047 0.953 30 H 0.063 0.937 31 H 0.073 0.927 32 H 0.100 0.900 33 H 0.062 0.938 34 H 0.036 0.964 35 H 0.098 0.902 36 H 0.067 0.933 37 H 0.076 0.924 38 H 0.082 0.918 39 H 0.145 0.855 40 H 0.140 0.860 41 H 0.160 0.840 42 H 0.159 0.841 43 H 0.263 0.737 44 H 0.134 0.866 45 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 8.290 -2.054 24.998 26.416 hybrid contribution -1.700 1.353 -0.138 2.177 sum 6.590 -0.701 24.859 25.728 Atomic orbital electron populations 1.22839 1.01845 1.01007 0.98915 1.19798 0.88530 0.95438 0.88926 0.94166 1.20943 1.31376 1.13785 0.87773 0.89948 1.24921 0.95947 0.96558 0.95838 1.69883 1.45736 1.40402 0.97850 0.86888 0.80439 0.84001 0.76976 1.20868 1.19328 1.22424 1.62164 1.59089 1.01781 1.00915 1.22352 0.96826 0.90958 1.01748 1.22152 0.95999 0.99386 0.90438 1.23013 0.78644 1.00854 0.98537 1.86252 1.18185 1.73322 1.42025 1.19358 0.91035 0.90853 0.86962 1.21075 1.00327 1.07049 0.96530 1.20869 0.91970 0.96560 0.97176 1.18696 0.93398 1.06214 0.96529 1.22595 0.89129 0.97672 0.89203 1.21263 1.03155 0.91962 1.08810 1.19910 0.79578 0.89066 0.76628 1.91091 1.38802 1.72427 1.36634 1.85073 1.43491 1.28882 1.75041 1.20758 0.98693 0.91167 0.91167 1.20291 0.90448 1.06068 1.01467 0.92489 0.95339 0.93652 0.92665 0.89978 0.93751 0.96352 0.90243 0.93304 0.92372 0.91792 0.85525 0.85988 0.84049 0.84112 0.73673 0.86649 0.85004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.03 7.98 37.15 0.30 -3.73 16 2 C 0.18 4.28 1.93 -68.87 -0.13 4.15 16 3 H 0.04 1.00 7.09 -51.93 -0.37 0.64 16 4 C -0.50 -14.05 8.52 -34.44 -0.29 -14.34 16 5 H 0.08 2.53 6.99 -52.49 -0.37 2.16 16 6 C 0.07 1.98 5.45 -17.82 -0.10 1.89 16 7 N -0.90 -27.60 13.96 55.43 0.77 -26.82 16 8 Si 0.89 22.02 24.37 -169.99 -4.14 17.88 16 9 H -0.28 -6.81 6.88 56.52 0.39 -6.42 16 10 H -0.27 -6.39 6.52 56.52 0.37 -6.03 16 11 H -0.30 -7.41 7.11 56.52 0.40 -7.01 16 12 N -0.52 -10.70 4.69 -236.29 -1.11 -11.81 16 13 C 0.03 0.56 8.70 60.07 0.52 1.08 16 14 C 0.05 0.82 4.78 -3.83 -0.02 0.80 16 15 C 0.06 0.93 4.79 37.16 0.18 1.11 16 16 O -0.29 -4.83 10.07 -18.88 -0.19 -5.02 16 17 C 0.17 2.48 6.70 -38.99 -0.26 2.22 16 18 C -0.23 -2.90 9.01 -39.50 -0.36 -3.26 16 19 C -0.05 -0.52 9.79 -39.14 -0.38 -0.90 16 20 C -0.15 -1.63 4.50 -105.05 -0.47 -2.10 16 21 C 0.03 0.25 9.80 -37.17 -0.36 -0.12 16 22 C -0.23 -1.76 9.86 -39.35 -0.39 -2.15 16 23 C 0.50 4.81 7.11 32.09 0.23 5.04 16 24 O -0.50 -6.37 12.72 -19.38 -0.25 -6.62 16 25 O -0.51 -3.86 13.54 -41.10 -0.56 -4.42 16 26 C 0.00 0.01 6.61 -39.14 -0.26 -0.25 16 27 C -0.16 -2.37 9.97 -39.50 -0.39 -2.77 16 28 H 0.06 1.20 6.38 -51.93 -0.33 0.87 16 29 H 0.03 0.52 6.75 -51.93 -0.35 0.17 16 30 H 0.04 1.03 3.28 -51.93 -0.17 0.86 16 31 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 32 H 0.08 1.76 6.53 -51.93 -0.34 1.42 16 33 H 0.04 0.72 6.21 -51.93 -0.32 0.40 16 34 H 0.02 0.33 6.28 -51.93 -0.33 0.00 16 35 H 0.08 1.35 8.00 -51.93 -0.42 0.93 16 36 H 0.05 0.74 6.94 -51.93 -0.36 0.38 16 37 H 0.06 0.69 7.64 -51.93 -0.40 0.29 16 38 H 0.06 0.86 5.78 -51.93 -0.30 0.56 16 39 H 0.13 1.38 6.27 -52.49 -0.33 1.05 16 40 H 0.12 0.97 8.06 -52.49 -0.42 0.54 16 41 H 0.14 0.60 8.06 -52.49 -0.42 0.18 16 42 H 0.14 0.72 8.06 -52.49 -0.42 0.30 16 43 H 0.41 1.61 8.98 45.56 0.41 2.02 16 44 H 0.12 1.30 7.01 -52.48 -0.37 0.93 16 45 H 0.13 1.89 8.06 -52.49 -0.42 1.47 16 LS Contribution 356.01 15.07 5.37 5.37 Total: -1.00 -34.32 356.01 -7.51 -41.82 By element: Atomic # 1 Polarization: 8.17 SS G_CDS: -5.21 Total: 2.96 kcal Atomic # 6 Polarization: -11.14 SS G_CDS: -2.19 Total: -13.34 kcal Atomic # 7 Polarization: -38.29 SS G_CDS: -0.33 Total: -38.63 kcal Atomic # 8 Polarization: -15.06 SS G_CDS: -0.99 Total: -16.06 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -4.14 Total: 17.88 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -34.32 -7.51 -41.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214003108.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.011 kcal (2) G-P(sol) polarization free energy of solvation -34.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds