Wall clock time and date at job start Tue Mar 31 2020 13:08:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.42902 * 114.00269 * 2 1 4 4 C 1.53000 * 109.47573 * 179.97438 * 3 2 1 5 5 H 1.08991 * 109.46993 * 173.74854 * 4 3 2 6 6 C 1.52997 * 109.47122 * 53.74196 * 4 3 2 7 7 N 1.46507 * 109.46856 * 293.74416 * 4 3 2 8 8 C 1.46503 * 119.99827 * 60.98222 * 7 4 3 9 9 C 1.34772 * 120.00001 * 240.98057 * 7 4 3 10 10 O 1.21720 * 119.99827 * 359.97438 * 9 7 4 11 11 C 1.46255 * 120.00348 * 180.02562 * 9 7 4 12 12 C 1.35012 * 120.00230 * 174.10539 * 11 9 7 13 13 C 1.46962 * 120.00381 * 348.45948 * 12 11 9 14 14 C 1.40031 * 120.09628 * 316.20575 * 13 12 11 15 15 C 1.37599 * 119.89294 * 179.69469 * 14 13 12 16 16 C 1.39177 * 120.10125 * 0.60477 * 15 14 13 17 17 O 1.35572 * 119.89803 * 179.69461 * 16 15 14 18 18 C 1.34773 * 117.00281 * 185.84181 * 17 16 15 19 19 H 1.07998 * 119.99948 * 5.42426 * 18 17 16 20 20 C 1.38713 * 120.00133 * 185.41364 * 18 17 16 21 21 N 1.31518 * 120.00310 * 180.02562 * 20 18 17 22 22 Si 1.86801 * 120.00257 * 0.02562 * 20 18 17 23 23 H 1.48503 * 109.47033 * 89.99418 * 22 20 18 24 24 H 1.48496 * 109.47287 * 209.99836 * 22 20 18 25 25 H 1.48504 * 109.47031 * 329.99869 * 22 20 18 26 26 C 1.39174 * 120.20319 * 359.67042 * 16 15 14 27 27 C 1.37596 * 120.10185 * 0.02562 * 26 16 15 28 28 H 1.09001 * 109.47004 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.47397 * 300.00272 * 1 2 3 30 30 H 1.08998 * 109.47224 * 60.00549 * 1 2 3 31 31 H 1.09001 * 109.46791 * 59.99363 * 3 2 1 32 32 H 1.08994 * 109.46917 * 300.00198 * 3 2 1 33 33 H 1.08995 * 109.47071 * 180.02562 * 6 4 3 34 34 H 1.09004 * 109.47425 * 300.00156 * 6 4 3 35 35 H 1.09003 * 109.47022 * 60.00232 * 6 4 3 36 36 H 1.09000 * 109.47000 * 95.32885 * 8 7 4 37 37 H 1.09004 * 109.46736 * 215.33003 * 8 7 4 38 38 H 1.08992 * 109.47222 * 335.33138 * 8 7 4 39 39 H 1.07998 * 119.99449 * 354.10984 * 11 9 7 40 40 H 1.07999 * 119.99896 * 168.45135 * 12 11 9 41 41 H 1.07994 * 120.05020 * 0.02562 * 14 13 12 42 42 H 1.08001 * 119.94567 * 180.27638 * 15 14 13 43 43 H 0.96993 * 119.99841 * 180.02562 * 21 20 18 44 44 H 1.08002 * 119.94848 * 180.02562 * 26 16 15 45 45 H 1.08001 * 120.04966 * 180.02562 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 0.0006 5 1 3.9782 2.1743 -0.1112 6 6 3.9770 0.2938 -1.1622 7 7 3.9778 0.5919 1.2653 8 6 3.5339 -0.7534 1.6385 9 6 4.7930 1.2843 2.0853 10 8 5.1622 2.4018 1.7749 11 6 5.2351 0.6924 3.3475 12 6 6.1442 1.3340 4.1122 13 6 6.8766 2.4875 3.5712 14 6 7.3980 2.4419 2.2724 15 6 8.0776 3.5268 1.7678 16 6 8.2579 4.6633 2.5506 17 8 8.9335 5.7275 2.0515 18 6 9.1793 6.7477 2.8972 19 1 8.9201 6.6576 3.9417 20 6 9.7654 7.9133 2.4261 21 7 10.0057 8.9086 3.2514 22 14 10.2134 8.0693 0.6193 23 1 9.0639 8.6396 -0.1282 24 1 11.3898 8.9642 0.4765 25 1 10.5425 6.7281 0.0733 26 6 7.7464 4.7109 3.8441 27 6 7.0601 3.6333 4.3549 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5137 -0.8900 31 1 1.6885 1.8464 0.8899 32 1 1.6886 1.8463 -0.8899 33 1 5.0635 0.2074 -1.1614 34 1 3.5341 -0.6959 -1.0502 35 1 3.6478 0.7348 -2.1031 36 1 4.2886 -1.4809 1.3398 37 1 3.3896 -0.8020 2.7179 38 1 2.5934 -0.9783 1.1357 39 1 4.8344 -0.2580 3.6678 40 1 6.3331 0.9995 5.1216 41 1 7.2624 1.5588 1.6659 42 1 8.4762 3.4942 0.7646 43 1 10.4152 9.7238 2.9218 44 1 7.8883 5.5951 4.4478 45 1 6.6631 3.6713 5.3586 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000255693069.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:08:22 Heat of formation + Delta-G solvation = -61.975514 kcal Electronic energy + Delta-G solvation = -26684.923157 eV Core-core repulsion = 22862.171404 eV Total energy + Delta-G solvation = -3822.751753 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.32741 -40.67082 -39.21601 -38.23251 -36.55635 -34.69223 -34.20672 -32.77629 -31.85482 -29.71040 -28.26559 -27.75384 -27.34684 -26.38537 -24.83610 -23.61728 -22.73891 -21.12449 -19.94810 -19.44051 -19.02131 -18.53057 -17.40924 -17.10678 -16.83271 -16.63436 -16.32510 -15.89729 -15.84184 -15.67527 -15.26401 -15.07816 -14.77667 -14.39021 -14.25224 -14.19729 -13.97206 -13.83046 -13.65818 -13.35792 -13.20357 -13.08955 -12.88483 -12.67862 -12.61170 -12.49111 -12.23889 -12.01040 -11.97881 -11.93962 -11.36276 -11.00349 -10.73288 -10.46884 -10.43536 -9.76275 -9.39262 -8.61093 -8.52513 -6.23133 -0.04806 0.68152 1.07986 1.28104 1.34393 1.49603 2.15563 2.26371 2.43503 2.78870 2.81175 3.09187 3.17774 3.72535 3.95714 4.00732 4.05400 4.11139 4.14515 4.31401 4.43932 4.46620 4.50543 4.53926 4.56602 4.60244 4.65623 4.76015 4.79973 4.86681 4.90382 4.93191 5.04189 5.16911 5.20389 5.27550 5.33179 5.38771 5.44932 5.64454 5.72677 5.77758 5.83538 5.89830 6.15006 6.26091 6.56542 6.81810 7.37446 7.57907 8.59186 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.018162 B = 0.002895 C = 0.002660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1541.276822 B = 9668.992943 C =10524.737947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.390 6.390 3 C 0.061 3.939 4 C 0.133 3.867 5 H 0.084 0.916 6 C -0.145 4.145 7 N -0.604 5.604 8 C 0.065 3.935 9 C 0.525 3.475 10 O -0.569 6.569 11 C -0.230 4.230 12 C 0.003 3.997 13 C -0.150 4.150 14 C 0.013 3.987 15 C -0.209 4.209 16 C 0.134 3.866 17 O -0.244 6.244 18 C -0.400 4.400 19 H 0.082 0.918 20 C 0.011 3.989 21 N -0.920 5.920 22 Si 0.969 3.031 23 H -0.268 1.268 24 H -0.262 1.262 25 H -0.265 1.265 26 C -0.252 4.252 27 C -0.052 4.052 28 H 0.102 0.898 29 H 0.041 0.959 30 H 0.046 0.954 31 H 0.043 0.957 32 H 0.071 0.929 33 H 0.046 0.954 34 H 0.076 0.924 35 H 0.073 0.927 36 H 0.060 0.940 37 H 0.081 0.919 38 H 0.104 0.896 39 H 0.170 0.830 40 H 0.167 0.833 41 H 0.122 0.878 42 H 0.116 0.884 43 H 0.286 0.714 44 H 0.109 0.891 45 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.860 -24.864 -4.572 31.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.310 6.310 3 C -0.017 4.017 4 C 0.029 3.971 5 H 0.103 0.897 6 C -0.203 4.203 7 N -0.336 5.336 8 C -0.076 4.076 9 C 0.317 3.683 10 O -0.450 6.450 11 C -0.250 4.250 12 C -0.016 4.016 13 C -0.151 4.151 14 C -0.005 4.005 15 C -0.228 4.228 16 C 0.084 3.916 17 O -0.151 6.151 18 C -0.476 4.476 19 H 0.099 0.901 20 C -0.187 4.187 21 N -0.561 5.561 22 Si 0.791 3.209 23 H -0.193 1.193 24 H -0.186 1.186 25 H -0.189 1.189 26 C -0.271 4.271 27 C -0.070 4.070 28 H 0.120 0.880 29 H 0.060 0.940 30 H 0.065 0.935 31 H 0.061 0.939 32 H 0.089 0.911 33 H 0.065 0.935 34 H 0.095 0.905 35 H 0.092 0.908 36 H 0.078 0.922 37 H 0.099 0.901 38 H 0.122 0.878 39 H 0.187 0.813 40 H 0.185 0.815 41 H 0.140 0.860 42 H 0.135 0.865 43 H 0.095 0.905 44 H 0.127 0.873 45 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -18.413 -24.219 -4.944 30.823 hybrid contribution 0.088 1.227 -0.377 1.287 sum -18.325 -22.992 -5.321 29.879 Atomic orbital electron populations 1.22912 0.79953 1.03907 1.00427 1.87786 1.20896 1.27064 1.95217 1.22809 0.92597 0.85369 1.00899 1.21139 0.92656 0.98697 0.84580 0.89748 1.21932 1.00811 1.00757 0.96806 1.47943 1.48220 1.17987 1.19484 1.22266 1.02072 0.81097 1.02176 1.19123 0.78592 0.85304 0.85255 1.90961 1.57119 1.21274 1.75643 1.23139 1.03304 1.03093 0.95508 1.22592 0.90211 0.89830 0.98994 1.18904 1.04929 0.96398 0.94873 1.20696 0.90678 0.95945 0.93180 1.20217 1.09073 0.92982 1.00527 1.19738 0.90890 0.87655 0.93287 1.83461 1.66590 1.25424 1.39643 1.20744 1.41665 0.93234 0.91957 0.90069 1.25279 0.95986 0.93228 1.04237 1.69704 1.43273 1.05715 1.37408 0.85245 0.78673 0.78821 0.78124 1.19297 1.18629 1.18940 1.21105 1.07739 1.01484 0.96776 1.21145 0.94938 0.91557 0.99403 0.87969 0.94024 0.93491 0.93905 0.91107 0.93472 0.90535 0.90781 0.92154 0.90077 0.87812 0.81283 0.81526 0.85985 0.86547 0.90470 0.87280 0.83972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 11.01 113.37 1.25 1.47 16 2 O -0.39 -5.46 6.74 -148.98 -1.00 -6.47 16 3 C 0.06 1.01 5.69 71.98 0.41 1.42 16 4 C 0.13 2.75 3.17 44.99 0.14 2.89 16 5 H 0.08 2.28 6.90 -2.39 -0.02 2.26 16 6 C -0.15 -2.46 8.97 71.98 0.65 -1.82 16 7 N -0.60 -12.54 2.76 -827.80 -2.29 -14.82 16 8 C 0.07 0.85 9.02 127.77 1.15 2.01 16 9 C 0.52 14.13 6.68 86.33 0.58 14.70 16 10 O -0.57 -21.07 11.47 -4.41 -0.05 -21.12 16 11 C -0.23 -4.71 9.12 23.61 0.22 -4.50 16 12 C 0.00 0.07 9.80 23.81 0.23 0.30 16 13 C -0.15 -5.16 4.53 -20.13 -0.09 -5.25 16 14 C 0.01 0.50 6.59 22.55 0.15 0.65 16 15 C -0.21 -9.40 9.97 22.34 0.22 -9.17 16 16 C 0.13 6.95 6.66 22.72 0.15 7.10 16 17 O -0.24 -14.31 8.57 -20.21 -0.17 -14.48 16 18 C -0.40 -24.82 9.89 67.93 0.67 -24.15 16 19 H 0.08 5.25 5.51 -2.91 -0.02 5.24 16 20 C 0.01 0.68 5.49 84.85 0.47 1.15 16 21 N -0.92 -56.60 13.96 21.62 0.30 -56.30 16 22 Si 0.97 47.59 28.62 68.60 1.96 49.55 16 23 H -0.27 -12.74 7.11 99.48 0.71 -12.04 16 24 H -0.26 -11.82 7.11 99.48 0.71 -11.11 16 25 H -0.26 -13.10 7.11 99.48 0.71 -12.40 16 26 C -0.25 -12.14 9.11 22.34 0.20 -11.94 16 27 C -0.05 -2.00 9.78 22.55 0.22 -1.78 16 28 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 29 H 0.04 0.38 8.14 -2.39 -0.02 0.36 16 30 H 0.05 0.38 8.14 -2.39 -0.02 0.36 16 31 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 34 H 0.08 1.15 7.04 -2.39 -0.02 1.13 16 35 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 36 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 37 H 0.08 0.79 6.34 -2.38 -0.02 0.78 16 38 H 0.10 1.32 4.88 -2.39 -0.01 1.31 16 39 H 0.17 1.99 6.27 -2.91 -0.02 1.98 16 40 H 0.17 2.53 8.06 -2.91 -0.02 2.50 16 41 H 0.12 4.11 7.04 -2.91 -0.02 4.09 16 42 H 0.12 5.00 8.06 -2.91 -0.02 4.98 16 43 H 0.29 16.04 8.31 -92.71 -0.77 15.27 16 44 H 0.11 5.66 5.69 -2.91 -0.02 5.65 16 45 H 0.14 4.38 8.06 -2.91 -0.02 4.36 16 Total: -1.00 -77.23 366.21 6.36 -70.87 By element: Atomic # 1 Polarization: 18.70 SS G_CDS: 0.99 Total: 19.69 kcal Atomic # 6 Polarization: -33.53 SS G_CDS: 6.62 Total: -26.91 kcal Atomic # 7 Polarization: -69.14 SS G_CDS: -1.98 Total: -71.12 kcal Atomic # 8 Polarization: -40.84 SS G_CDS: -1.23 Total: -42.07 kcal Atomic # 14 Polarization: 47.59 SS G_CDS: 1.96 Total: 49.55 kcal Total: -77.23 6.36 -70.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000255693069.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.891 kcal (2) G-P(sol) polarization free energy of solvation -77.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds