Wall clock time and date at job start Tue Mar 31 2020 12:32:36
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42899 * 1
3 3 C 1.42898 * 113.99645 * 2 1
4 4 H 1.08996 * 109.47403 * 30.00004 * 3 2 1
5 5 C 1.53009 * 109.47201 * 270.00005 * 3 2 1
6 6 C 1.53002 * 109.47264 * 150.00137 * 3 2 1
7 7 C 1.52996 * 109.47185 * 294.99881 * 6 3 2
8 8 N 1.46501 * 109.47475 * 179.97438 * 7 6 3
9 9 C 1.34775 * 120.00047 * 179.72921 * 8 7 6
10 10 O 1.21722 * 119.99821 * 0.27007 * 9 8 7
11 11 C 1.46256 * 119.99748 * 180.27658 * 9 8 7
12 12 C 1.35022 * 119.99569 * 179.97438 * 11 9 8
13 13 C 1.46963 * 119.99798 * 180.02562 * 12 11 9
14 14 C 1.40022 * 120.09910 * 359.71821 * 13 12 11
15 15 C 1.37600 * 119.89657 * 179.69878 * 14 13 12
16 16 C 1.39179 * 120.10097 * 0.60491 * 15 14 13
17 17 O 1.35564 * 119.89884 * 179.69475 * 16 15 14
18 18 C 1.34785 * 117.00268 * 174.41727 * 17 16 15
19 19 H 1.08004 * 119.99348 * 5.06115 * 18 17 16
20 20 C 1.38708 * 120.00587 * 185.05334 * 18 17 16
21 21 N 1.31511 * 120.00226 * 0.02562 * 20 18 17
22 22 Si 1.86801 * 120.00444 * 180.02562 * 20 18 17
23 23 H 1.48501 * 109.47272 * 90.00264 * 22 20 18
24 24 H 1.48502 * 109.47436 * 210.00810 * 22 20 18
25 25 H 1.48507 * 109.46750 * 330.00321 * 22 20 18
26 26 C 1.39172 * 120.19956 * 359.66990 * 16 15 14
27 27 C 1.37594 * 120.10670 * 0.02722 * 26 16 15
28 28 H 1.09006 * 109.46675 * 180.02562 * 1 2 3
29 29 H 1.09004 * 109.47073 * 299.99706 * 1 2 3
30 30 H 1.09000 * 109.47417 * 60.00318 * 1 2 3
31 31 H 1.08996 * 109.46941 * 300.00282 * 5 3 2
32 32 H 1.08993 * 109.46683 * 59.99836 * 5 3 2
33 33 H 1.08999 * 109.47181 * 180.02562 * 5 3 2
34 34 H 1.08994 * 109.47229 * 174.99791 * 6 3 2
35 35 H 1.09004 * 109.47070 * 54.99663 * 6 3 2
36 36 H 1.09008 * 109.47226 * 59.99745 * 7 6 3
37 37 H 1.09001 * 109.47353 * 300.00505 * 7 6 3
38 38 H 0.96997 * 119.99320 * 359.97438 * 8 7 6
39 39 H 1.07999 * 120.00279 * 359.97438 * 11 9 8
40 40 H 1.07999 * 120.00151 * 359.97438 * 12 11 9
41 41 H 1.08003 * 120.05281 * 0.02562 * 14 13 12
42 42 H 1.08004 * 119.95304 * 180.27224 * 15 14 13
43 43 H 0.96998 * 120.00310 * 180.02562 * 21 20 18
44 44 H 1.08005 * 119.94582 * 179.97438 * 26 16 15
45 45 H 1.08005 * 120.05862 * 180.02562 * 27 26 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0101 1.3055 0.0000
4 1 1.3449 1.9994 0.5138
5 6 2.2176 1.7714 -1.4426
6 6 3.3588 1.2634 0.7212
7 6 3.1383 0.9186 2.1954
8 7 4.4298 0.8776 2.8859
9 6 4.4811 0.5967 4.2031
10 8 3.4548 0.3721 4.8179
11 6 5.7698 0.5618 4.8936
12 6 5.8211 0.2809 6.2133
13 6 7.1161 0.2464 6.9074
14 6 8.2984 0.4987 6.2010
15 6 9.5080 0.4714 6.8563
16 6 9.5586 0.1812 8.2165
17 8 10.7531 0.1493 8.8567
18 6 10.7267 -0.0227 10.1933
19 1 9.7888 -0.2094 10.6952
20 6 11.9040 0.0399 10.9241
21 7 13.0460 0.2676 10.3131
22 14 11.8674 -0.1992 12.7764
23 1 12.0391 -1.6399 13.0931
24 1 12.9689 0.5790 13.3979
25 1 10.5649 0.2732 13.3108
26 6 8.3865 -0.0759 8.9215
27 6 7.1718 -0.0448 8.2759
28 1 -0.3633 -1.0277 0.0005
29 1 -0.3633 0.5138 0.8900
30 1 -0.3634 0.5138 -0.8900
31 1 2.8828 1.0776 -1.9564
32 1 1.2568 1.8014 -1.9563
33 1 2.6613 2.7670 -1.4426
34 1 3.8426 2.2371 0.6443
35 1 3.9931 0.5052 0.2617
36 1 2.6545 -0.0552 2.2724
37 1 2.5040 1.6766 2.6550
38 1 5.2475 1.0563 2.3958
39 1 6.6804 0.7608 4.3481
40 1 4.9105 0.0823 6.7590
41 1 8.2605 0.7196 5.1444
42 1 10.4202 0.6703 6.3132
43 1 13.8693 0.3110 10.8241
44 1 8.4306 -0.3011 9.9769
45 1 6.2627 -0.2440 8.8239
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000263765725.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:32:36
Heat of formation + Delta-G solvation = -82.601688 kcal
Electronic energy + Delta-G solvation = -24510.454372 eV
Core-core repulsion = 20686.808201 eV
Total energy + Delta-G solvation = -3823.646171 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 319.162 amu
Computer time = 0.70 seconds
Orbital eigenvalues (eV)
-39.65082 -39.14707 -38.73560 -36.89663 -35.39028 -33.19998 -32.89283 -32.26956
-30.42307 -29.54037 -28.02199 -27.02713 -25.69111 -24.23593 -22.61128 -22.07490
-21.63593 -20.64961 -19.28454 -18.14988 -17.32330 -17.11784 -17.02444 -16.14485
-15.47331 -15.42740 -15.22326 -14.85892 -14.75623 -14.38293 -13.96819 -13.86943
-13.77228 -13.50972 -13.36602 -13.02421 -12.99273 -12.68510 -12.58329 -11.95123
-11.91326 -11.82550 -11.71880 -11.68354 -11.65622 -11.12649 -11.10286 -11.06044
-10.67213 -10.53303 -10.08521 -9.73299 -9.59265 -9.48500 -9.09080 -8.83534
-8.37262 -7.10234 -6.64406 -4.19421 1.09557 2.14441 2.58121 3.04440
3.05407 3.10161 3.20409 3.38218 3.61962 3.82907 4.33603 4.48476
4.52108 4.68058 4.89763 4.90688 4.93144 4.93665 5.02129 5.05520
5.13551 5.20828 5.22118 5.29340 5.32306 5.49431 5.54360 5.62511
5.68144 5.68949 5.72044 5.84851 6.02367 6.13241 6.38604 6.48422
6.51803 6.62526 6.78478 6.80317 6.92928 7.14078 7.24734 7.29301
7.58729 7.64925 7.80930 8.38394 8.80422 9.47429 10.52220
Molecular weight = 319.16amu
Principal moments of inertia in cm(-1)
A = 0.044147 B = 0.001596 C = 0.001551
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 634.097218 B =17535.583360 C =18044.551231
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.030 3.970
2 O -0.383 6.383
3 C 0.087 3.913
4 H 0.064 0.936
5 C -0.174 4.174
6 C -0.130 4.130
7 C 0.122 3.878
8 N -0.735 5.735
9 C 0.555 3.445
10 O -0.560 6.560
11 C -0.282 4.282
12 C 0.037 3.963
13 C -0.198 4.198
14 C -0.043 4.043
15 C -0.199 4.199
16 C 0.167 3.833
17 O -0.163 6.163
18 C -0.393 4.393
19 H 0.097 0.903
20 C 0.042 3.958
21 N -0.852 5.852
22 Si 0.945 3.055
23 H -0.271 1.271
24 H -0.276 1.276
25 H -0.265 1.265
26 C -0.242 4.242
27 C -0.035 4.035
28 H 0.086 0.914
29 H 0.043 0.957
30 H 0.040 0.960
31 H 0.065 0.935
32 H 0.057 0.943
33 H 0.067 0.933
34 H 0.083 0.917
35 H 0.080 0.920
36 H 0.072 0.928
37 H 0.061 0.939
38 H 0.400 0.600
39 H 0.123 0.877
40 H 0.123 0.877
41 H 0.118 0.882
42 H 0.121 0.879
43 H 0.274 0.726
44 H 0.131 0.869
45 H 0.114 0.886
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -18.202 2.923 -18.340 26.004
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.066 4.066
2 O -0.302 6.302
3 C 0.029 3.971
4 H 0.082 0.918
5 C -0.232 4.232
6 C -0.167 4.167
7 C -0.001 4.001
8 N -0.386 5.386
9 C 0.347 3.653
10 O -0.440 6.440
11 C -0.303 4.303
12 C 0.017 3.983
13 C -0.199 4.199
14 C -0.061 4.061
15 C -0.219 4.219
16 C 0.110 3.890
17 O -0.064 6.064
18 C -0.469 4.469
19 H 0.115 0.885
20 C -0.164 4.164
21 N -0.485 5.485
22 Si 0.769 3.231
23 H -0.196 1.196
24 H -0.201 1.201
25 H -0.190 1.190
26 C -0.261 4.261
27 C -0.054 4.054
28 H 0.104 0.896
29 H 0.061 0.939
30 H 0.058 0.942
31 H 0.084 0.916
32 H 0.076 0.924
33 H 0.086 0.914
34 H 0.101 0.899
35 H 0.098 0.902
36 H 0.090 0.910
37 H 0.079 0.921
38 H 0.233 0.767
39 H 0.141 0.859
40 H 0.140 0.860
41 H 0.136 0.864
42 H 0.139 0.861
43 H 0.084 0.916
44 H 0.149 0.851
45 H 0.132 0.868
Dipole moment (debyes) X Y Z Total
from point charges -18.304 2.646 -17.912 25.746
hybrid contribution 0.193 0.213 0.580 0.648
sum -18.110 2.860 -17.332 25.230
Atomic orbital electron populations
1.22795 0.81039 1.02890 0.99900 1.87949 1.19683 1.27534 1.95059
1.22051 0.94481 0.85013 0.95543 0.91822 1.22277 1.02487 1.01799
0.96622 1.21922 0.96962 1.03157 0.94692 1.21232 0.85811 1.02429
0.90666 1.45850 1.09478 1.73463 1.09846 1.18417 0.89888 0.75711
0.81323 1.90772 1.36422 1.50493 1.66350 1.22442 0.95924 1.15553
0.96395 1.22284 0.96263 0.86303 0.93412 1.18470 0.92088 1.15242
0.94125 1.20884 0.91161 0.95793 0.98311 1.20152 0.98084 1.11024
0.92611 1.19613 0.86026 0.91296 0.92043 1.83901 1.24443 1.75620
1.22418 1.21476 0.95927 1.50517 0.78973 0.88544 1.25386 0.94112
0.96053 1.00880 1.70013 0.98386 1.43200 1.36899 0.85650 0.78761
0.78855 0.79874 1.19639 1.20052 1.18953 1.21099 0.92054 1.11625
1.01349 1.20992 0.96915 0.94462 0.92991 0.89582 0.93860 0.94184
0.91585 0.92381 0.91420 0.89876 0.90169 0.90958 0.92061 0.76655
0.85889 0.85951 0.86402 0.86134 0.91615 0.85124 0.86807
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.19 10.82 101.05 1.09 1.28 16
2 O -0.38 -3.31 9.88 -35.23 -0.35 -3.66 16
3 C 0.09 0.58 2.72 -26.73 -0.07 0.51 16
4 H 0.06 0.38 7.79 -51.93 -0.40 -0.02 16
5 C -0.17 -0.92 9.53 37.16 0.35 -0.57 16
6 C -0.13 -0.87 5.04 -26.73 -0.13 -1.00 16
7 C 0.12 1.20 5.57 -4.04 -0.02 1.17 16
8 N -0.73 -7.83 5.55 -61.75 -0.34 -8.17 16
9 C 0.55 8.03 7.74 -13.04 -0.10 7.93 16
10 O -0.56 -10.15 16.23 5.17 0.08 -10.06 16
11 C -0.28 -3.92 9.41 -37.51 -0.35 -4.28 16
12 C 0.04 0.58 9.45 -37.19 -0.35 0.22 16
13 C -0.20 -3.41 5.87 -105.03 -0.62 -4.03 16
14 C -0.04 -0.74 9.40 -39.15 -0.37 -1.11 16
15 C -0.20 -4.00 9.97 -39.46 -0.39 -4.39 16
16 C 0.17 3.84 6.66 -38.89 -0.26 3.59 16
17 O -0.16 -4.43 9.74 0.75 0.01 -4.43 16
18 C -0.39 -10.48 9.48 30.91 0.29 -10.19 16
19 H 0.10 2.36 5.18 -52.48 -0.27 2.09 16
20 C 0.04 1.10 5.49 -17.52 -0.10 1.00 16
21 N -0.85 -23.86 13.67 55.48 0.76 -23.10 16
22 Si 0.94 19.55 29.55 -169.99 -5.02 14.53 16
23 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16
24 H -0.28 -5.59 7.11 56.52 0.40 -5.19 16
25 H -0.27 -5.29 7.11 56.52 0.40 -4.88 16
26 C -0.24 -5.04 9.14 -39.47 -0.36 -5.40 16
27 C -0.04 -0.63 9.78 -39.15 -0.38 -1.02 16
28 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16
29 H 0.04 0.25 8.09 -51.93 -0.42 -0.17 16
30 H 0.04 0.19 7.87 -51.93 -0.41 -0.21 16
31 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16
32 H 0.06 0.29 7.87 -51.93 -0.41 -0.12 16
33 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16
34 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16
35 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16
36 H 0.07 0.85 7.82 -51.92 -0.41 0.44 16
37 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16
38 H 0.40 3.12 8.45 -40.82 -0.34 2.77 16
39 H 0.12 1.45 6.06 -52.49 -0.32 1.13 16
40 H 0.12 1.89 7.52 -52.49 -0.39 1.50 16
41 H 0.12 1.64 6.16 -52.48 -0.32 1.31 16
42 H 0.12 2.30 8.06 -52.48 -0.42 1.87 16
43 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16
44 H 0.13 2.69 5.62 -52.48 -0.29 2.39 16
45 H 0.11 1.74 8.06 -52.48 -0.42 1.31 16
LS Contribution 383.73 15.07 5.78 5.78
Total: -1.00 -32.01 383.73 -7.37 -39.38
By element:
Atomic # 1 Polarization: 12.52 SS G_CDS: -6.51 Total: 6.01 kcal
Atomic # 6 Polarization: -14.50 SS G_CDS: -1.77 Total: -16.27 kcal
Atomic # 7 Polarization: -31.69 SS G_CDS: 0.42 Total: -31.28 kcal
Atomic # 8 Polarization: -17.89 SS G_CDS: -0.26 Total: -18.15 kcal
Atomic # 14 Polarization: 19.55 SS G_CDS: -5.02 Total: 14.53 kcal
Total LS contribution 5.78 Total: 5.78 kcal
Total: -32.01 -7.37 -39.38 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000263765725.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -43.222 kcal
(2) G-P(sol) polarization free energy of solvation -32.013 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.235 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.366 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.379 kcal
(6) G-S(sol) free energy of system = (1) + (5) -82.602 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.70 seconds