Wall clock time and date at job start Tue Mar 31 2020 12:32:35
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42899 * 1
3 3 C 1.42898 * 113.99645 * 2 1
4 4 H 1.08996 * 109.47403 * 30.00004 * 3 2 1
5 5 C 1.53009 * 109.47201 * 270.00005 * 3 2 1
6 6 C 1.53002 * 109.47264 * 150.00137 * 3 2 1
7 7 C 1.52996 * 109.47185 * 294.99881 * 6 3 2
8 8 N 1.46501 * 109.47475 * 179.97438 * 7 6 3
9 9 C 1.34775 * 120.00047 * 179.72921 * 8 7 6
10 10 O 1.21722 * 119.99821 * 0.27007 * 9 8 7
11 11 C 1.46256 * 119.99748 * 180.27658 * 9 8 7
12 12 C 1.35022 * 119.99569 * 179.97438 * 11 9 8
13 13 C 1.46963 * 119.99798 * 180.02562 * 12 11 9
14 14 C 1.40022 * 120.09910 * 359.71821 * 13 12 11
15 15 C 1.37600 * 119.89657 * 179.69878 * 14 13 12
16 16 C 1.39179 * 120.10097 * 0.60491 * 15 14 13
17 17 O 1.35564 * 119.89884 * 179.69475 * 16 15 14
18 18 C 1.34785 * 117.00268 * 174.41727 * 17 16 15
19 19 H 1.08004 * 119.99348 * 5.06115 * 18 17 16
20 20 C 1.38708 * 120.00587 * 185.05334 * 18 17 16
21 21 N 1.31511 * 120.00226 * 0.02562 * 20 18 17
22 22 Si 1.86801 * 120.00444 * 180.02562 * 20 18 17
23 23 H 1.48501 * 109.47272 * 90.00264 * 22 20 18
24 24 H 1.48502 * 109.47436 * 210.00810 * 22 20 18
25 25 H 1.48507 * 109.46750 * 330.00321 * 22 20 18
26 26 C 1.39172 * 120.19956 * 359.66990 * 16 15 14
27 27 C 1.37594 * 120.10670 * 0.02722 * 26 16 15
28 28 H 1.09006 * 109.46675 * 180.02562 * 1 2 3
29 29 H 1.09004 * 109.47073 * 299.99706 * 1 2 3
30 30 H 1.09000 * 109.47417 * 60.00318 * 1 2 3
31 31 H 1.08996 * 109.46941 * 300.00282 * 5 3 2
32 32 H 1.08993 * 109.46683 * 59.99836 * 5 3 2
33 33 H 1.08999 * 109.47181 * 180.02562 * 5 3 2
34 34 H 1.08994 * 109.47229 * 174.99791 * 6 3 2
35 35 H 1.09004 * 109.47070 * 54.99663 * 6 3 2
36 36 H 1.09008 * 109.47226 * 59.99745 * 7 6 3
37 37 H 1.09001 * 109.47353 * 300.00505 * 7 6 3
38 38 H 0.96997 * 119.99320 * 359.97438 * 8 7 6
39 39 H 1.07999 * 120.00279 * 359.97438 * 11 9 8
40 40 H 1.07999 * 120.00151 * 359.97438 * 12 11 9
41 41 H 1.08003 * 120.05281 * 0.02562 * 14 13 12
42 42 H 1.08004 * 119.95304 * 180.27224 * 15 14 13
43 43 H 0.96998 * 120.00310 * 180.02562 * 21 20 18
44 44 H 1.08005 * 119.94582 * 179.97438 * 26 16 15
45 45 H 1.08005 * 120.05862 * 180.02562 * 27 26 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0101 1.3055 0.0000
4 1 1.3449 1.9994 0.5138
5 6 2.2176 1.7714 -1.4426
6 6 3.3588 1.2634 0.7212
7 6 3.1383 0.9186 2.1954
8 7 4.4298 0.8776 2.8859
9 6 4.4811 0.5967 4.2031
10 8 3.4548 0.3721 4.8179
11 6 5.7698 0.5618 4.8936
12 6 5.8211 0.2809 6.2133
13 6 7.1161 0.2464 6.9074
14 6 8.2984 0.4987 6.2010
15 6 9.5080 0.4714 6.8563
16 6 9.5586 0.1812 8.2165
17 8 10.7531 0.1493 8.8567
18 6 10.7267 -0.0227 10.1933
19 1 9.7888 -0.2094 10.6952
20 6 11.9040 0.0399 10.9241
21 7 13.0460 0.2676 10.3131
22 14 11.8674 -0.1992 12.7764
23 1 12.0391 -1.6399 13.0931
24 1 12.9689 0.5790 13.3979
25 1 10.5649 0.2732 13.3108
26 6 8.3865 -0.0759 8.9215
27 6 7.1718 -0.0448 8.2759
28 1 -0.3633 -1.0277 0.0005
29 1 -0.3633 0.5138 0.8900
30 1 -0.3634 0.5138 -0.8900
31 1 2.8828 1.0776 -1.9564
32 1 1.2568 1.8014 -1.9563
33 1 2.6613 2.7670 -1.4426
34 1 3.8426 2.2371 0.6443
35 1 3.9931 0.5052 0.2617
36 1 2.6545 -0.0552 2.2724
37 1 2.5040 1.6766 2.6550
38 1 5.2475 1.0563 2.3958
39 1 6.6804 0.7608 4.3481
40 1 4.9105 0.0823 6.7590
41 1 8.2605 0.7196 5.1444
42 1 10.4202 0.6703 6.3132
43 1 13.8693 0.3110 10.8241
44 1 8.4306 -0.3011 9.9769
45 1 6.2627 -0.2440 8.8239
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000263765725.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:32:35
Heat of formation + Delta-G solvation = -103.541927 kcal
Electronic energy + Delta-G solvation = -24511.362409 eV
Core-core repulsion = 20686.808201 eV
Total energy + Delta-G solvation = -3824.554208 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 319.162 amu
Computer time = 0.69 seconds
Orbital eigenvalues (eV)
-40.92119 -40.59963 -39.37668 -38.49198 -36.30508 -34.72943 -34.01952 -33.54368
-31.96115 -30.43811 -29.25409 -27.57746 -27.44666 -25.26199 -23.88531 -23.45543
-22.27916 -21.88612 -20.62474 -19.72913 -18.84038 -18.23823 -17.85038 -17.08888
-16.48914 -16.39614 -16.28881 -16.09684 -15.88253 -15.81184 -15.60837 -15.26247
-14.74468 -14.68730 -14.57455 -14.11148 -14.03494 -13.59620 -13.40587 -13.30882
-13.23705 -13.14927 -12.70675 -12.58254 -12.44726 -12.39240 -12.22415 -12.19917
-12.12521 -11.61473 -11.21020 -11.10792 -11.00500 -10.58132 -10.54640 -10.05677
-9.88541 -8.67263 -8.51699 -6.17964 -0.23807 0.59231 1.14320 1.36214
1.46228 1.53267 2.15704 2.27766 2.38134 2.87038 2.88263 3.18521
3.43057 3.76925 3.80333 3.95148 4.02227 4.09446 4.14436 4.30629
4.33932 4.36430 4.44369 4.48890 4.49529 4.58155 4.64100 4.68041
4.81744 4.88040 4.95302 4.97100 5.03644 5.05009 5.15471 5.20342
5.30027 5.32490 5.34237 5.48791 5.59855 5.64537 5.82158 5.97804
6.11184 6.29693 6.62720 6.92664 7.30299 7.69665 8.70256
Molecular weight = 319.16amu
Principal moments of inertia in cm(-1)
A = 0.044147 B = 0.001596 C = 0.001551
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 634.097218 B =17535.583360 C =18044.551231
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.026 3.974
2 O -0.409 6.409
3 C 0.081 3.919
4 H 0.069 0.931
5 C -0.170 4.170
6 C -0.120 4.120
7 C 0.123 3.877
8 N -0.715 5.715
9 C 0.547 3.453
10 O -0.598 6.598
11 C -0.244 4.244
12 C 0.014 3.986
13 C -0.170 4.170
14 C -0.037 4.037
15 C -0.206 4.206
16 C 0.129 3.871
17 O -0.220 6.220
18 C -0.418 4.418
19 H 0.105 0.895
20 C -0.017 4.017
21 N -0.913 5.913
22 Si 1.018 2.982
23 H -0.263 1.263
24 H -0.271 1.271
25 H -0.253 1.253
26 C -0.249 4.249
27 C -0.041 4.041
28 H 0.089 0.911
29 H 0.044 0.956
30 H 0.053 0.947
31 H 0.060 0.940
32 H 0.059 0.941
33 H 0.082 0.918
34 H 0.106 0.894
35 H 0.081 0.919
36 H 0.050 0.950
37 H 0.056 0.944
38 H 0.417 0.583
39 H 0.154 0.846
40 H 0.123 0.877
41 H 0.162 0.838
42 H 0.124 0.876
43 H 0.275 0.725
44 H 0.124 0.876
45 H 0.143 0.857
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -20.730 3.628 -20.608 29.455
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.071 4.071
2 O -0.329 6.329
3 C 0.023 3.977
4 H 0.087 0.913
5 C -0.228 4.228
6 C -0.158 4.158
7 C 0.000 4.000
8 N -0.366 5.366
9 C 0.338 3.662
10 O -0.482 6.482
11 C -0.265 4.265
12 C -0.006 4.006
13 C -0.171 4.171
14 C -0.055 4.055
15 C -0.225 4.225
16 C 0.077 3.923
17 O -0.125 6.125
18 C -0.494 4.494
19 H 0.123 0.877
20 C -0.216 4.216
21 N -0.550 5.550
22 Si 0.837 3.163
23 H -0.188 1.188
24 H -0.195 1.195
25 H -0.177 1.177
26 C -0.268 4.268
27 C -0.059 4.059
28 H 0.108 0.892
29 H 0.063 0.937
30 H 0.071 0.929
31 H 0.079 0.921
32 H 0.078 0.922
33 H 0.101 0.899
34 H 0.124 0.876
35 H 0.100 0.900
36 H 0.069 0.931
37 H 0.074 0.926
38 H 0.255 0.745
39 H 0.172 0.828
40 H 0.141 0.859
41 H 0.179 0.821
42 H 0.142 0.858
43 H 0.084 0.916
44 H 0.142 0.858
45 H 0.161 0.839
Dipole moment (debyes) X Y Z Total
from point charges -20.884 3.361 -20.261 29.290
hybrid contribution 0.472 0.034 0.796 0.926
sum -20.412 3.395 -19.465 28.409
Atomic orbital electron populations
1.22907 0.80117 1.03438 1.00594 1.87910 1.20886 1.28847 1.95254
1.22199 0.94419 0.84503 0.96532 0.91302 1.22240 1.02670 1.02382
0.95460 1.21895 0.97332 1.04385 0.92145 1.21266 0.85058 1.01152
0.92570 1.45755 1.10853 1.71290 1.08736 1.18597 0.89465 0.75712
0.82419 1.90774 1.37708 1.52224 1.67483 1.22776 0.96840 1.11043
0.95804 1.22169 0.95229 0.88992 0.94212 1.18781 0.93017 1.11508
0.93798 1.21296 0.89670 0.94323 1.00220 1.20430 0.99674 1.10772
0.91671 1.20196 0.86000 0.92677 0.93427 1.83882 1.26422 1.79437
1.22742 1.21899 0.96649 1.51245 0.79558 0.87748 1.26592 0.93452
0.95621 1.05956 1.70146 0.99178 1.46795 1.38875 0.84591 0.79200
0.79062 0.73424 1.18781 1.19531 1.17656 1.21196 0.92572 1.11748
1.01298 1.21316 0.96843 0.93989 0.93773 0.89241 0.93748 0.92876
0.92074 0.92163 0.89936 0.87570 0.90003 0.93124 0.92570 0.74550
0.82814 0.85916 0.82111 0.85845 0.91604 0.85791 0.83886
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.28 10.82 113.37 1.23 1.51 16
2 O -0.41 -6.44 9.88 -148.98 -1.47 -7.92 16
3 C 0.08 0.89 2.72 30.60 0.08 0.97 16
4 H 0.07 0.67 7.79 -2.39 -0.02 0.65 16
5 C -0.17 -1.34 9.53 71.99 0.69 -0.65 16
6 C -0.12 -1.22 5.04 30.59 0.15 -1.07 16
7 C 0.12 2.09 5.57 86.38 0.48 2.57 16
8 N -0.71 -12.50 5.55 -467.49 -2.60 -15.10 16
9 C 0.55 13.88 7.74 86.33 0.67 14.55 16
10 O -0.60 -20.35 16.23 -4.42 -0.07 -20.42 16
11 C -0.24 -5.62 9.41 23.61 0.22 -5.39 16
12 C 0.01 0.38 9.45 23.82 0.23 0.60 16
13 C -0.17 -5.33 5.87 -20.13 -0.12 -5.44 16
14 C -0.04 -1.16 9.40 22.55 0.21 -0.95 16
15 C -0.21 -8.20 9.97 22.35 0.22 -7.98 16
16 C 0.13 6.16 6.66 22.72 0.15 6.31 16
17 O -0.22 -12.75 9.74 -20.23 -0.20 -12.95 16
18 C -0.42 -23.57 9.48 67.93 0.64 -22.92 16
19 H 0.11 5.39 5.18 -2.91 -0.02 5.37 16
20 C -0.02 -0.96 5.49 84.85 0.47 -0.49 16
21 N -0.91 -54.33 13.67 21.62 0.30 -54.03 16
22 Si 1.02 41.55 29.55 68.60 2.03 43.58 16
23 H -0.26 -10.23 7.11 99.48 0.71 -9.52 16
24 H -0.27 -10.64 7.11 99.48 0.71 -9.93 16
25 H -0.25 -9.62 7.11 99.48 0.71 -8.91 16
26 C -0.25 -10.50 9.14 22.34 0.20 -10.29 16
27 C -0.04 -1.41 9.78 22.55 0.22 -1.19 16
28 H 0.09 0.87 8.14 -2.38 -0.02 0.85 16
29 H 0.04 0.46 8.09 -2.39 -0.02 0.44 16
30 H 0.05 0.42 7.87 -2.39 -0.02 0.41 16
31 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16
32 H 0.06 0.45 7.87 -2.39 -0.02 0.43 16
33 H 0.08 0.40 8.14 -2.39 -0.02 0.38 16
34 H 0.11 0.62 8.14 -2.39 -0.02 0.60 16
35 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16
36 H 0.05 1.11 7.82 -2.38 -0.02 1.09 16
37 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16
38 H 0.42 4.44 8.45 -92.71 -0.78 3.65 16
39 H 0.15 2.59 6.06 -2.91 -0.02 2.57 16
40 H 0.12 3.43 7.52 -2.91 -0.02 3.41 16
41 H 0.16 3.56 6.16 -2.91 -0.02 3.54 16
42 H 0.12 4.74 8.06 -2.91 -0.02 4.71 16
43 H 0.27 14.95 8.31 -92.71 -0.77 14.18 16
44 H 0.12 5.29 5.62 -2.91 -0.02 5.27 16
45 H 0.14 4.01 8.06 -2.91 -0.02 3.99 16
Total: -1.00 -75.07 383.73 3.96 -71.12
By element:
Atomic # 1 Polarization: 25.36 SS G_CDS: 0.22 Total: 25.58 kcal
Atomic # 6 Polarization: -35.61 SS G_CDS: 5.75 Total: -29.86 kcal
Atomic # 7 Polarization: -66.83 SS G_CDS: -2.30 Total: -69.13 kcal
Atomic # 8 Polarization: -39.54 SS G_CDS: -1.74 Total: -41.29 kcal
Atomic # 14 Polarization: 41.55 SS G_CDS: 2.03 Total: 43.58 kcal
Total: -75.07 3.96 -71.12 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000263765725.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -32.426 kcal
(2) G-P(sol) polarization free energy of solvation -75.072 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.498 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.956 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.116 kcal
(6) G-S(sol) free energy of system = (1) + (5) -103.542 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.69 seconds