Wall clock time and date at job start Tue Mar 31 2020 12:51:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50696 * 120.00463 * 2 1 4 4 O 1.42901 * 109.47158 * 134.99823 * 3 2 1 5 5 C 1.35802 * 117.00011 * 180.02562 * 4 3 2 6 6 C 1.38833 * 119.92873 * 0.02562 * 5 4 3 7 7 C 1.37788 * 120.15315 * 179.72364 * 6 5 4 8 8 C 1.39702 * 120.00000 * 0.50916 * 7 6 5 9 9 C 1.47611 * 120.07142 * 179.77042 * 8 7 6 10 10 O 1.21584 * 119.99630 * 200.43575 * 9 8 7 11 11 N 1.34773 * 119.99960 * 20.43232 * 9 8 7 12 12 C 1.46494 * 119.99932 * 6.95199 * 11 9 8 13 13 C 1.46498 * 119.99798 * 186.94436 * 11 9 8 14 14 H 1.09000 * 109.47384 * 0.02562 * 13 11 9 15 15 C 1.53003 * 109.47399 * 240.00118 * 13 11 9 16 16 C 1.50708 * 109.46979 * 120.00141 * 13 11 9 17 17 H 1.07998 * 119.99897 * 0.02562 * 16 13 11 18 18 C 1.37873 * 120.00215 * 180.02562 * 16 13 11 19 19 N 1.31519 * 119.99802 * 359.97438 * 18 16 13 20 20 Si 1.86797 * 120.00160 * 180.02562 * 18 16 13 21 21 H 1.48499 * 109.46935 * 59.99927 * 20 18 16 22 22 H 1.48502 * 109.47189 * 179.97438 * 20 18 16 23 23 H 1.48499 * 109.46951 * 299.99994 * 20 18 16 24 24 C 1.39731 * 119.85893 * 359.49298 * 8 7 6 25 25 C 1.38147 * 119.85103 * 0.25004 * 24 8 7 26 26 O 1.35993 * 120.00381 * 179.97438 * 25 24 8 27 27 C 1.42904 * 117.00049 * 0.02562 * 26 25 24 28 28 H 1.07994 * 120.00266 * 180.02562 * 1 2 3 29 29 H 1.07997 * 119.99545 * 0.02562 * 1 2 3 30 30 H 1.08006 * 119.99543 * 180.02562 * 2 1 3 31 31 H 1.09004 * 109.46971 * 14.99878 * 3 2 1 32 32 H 1.09002 * 109.47340 * 255.00072 * 3 2 1 33 33 H 1.08001 * 119.92365 * 0.02562 * 6 5 4 34 34 H 1.08000 * 120.00366 * 180.28238 * 7 6 5 35 35 H 1.09006 * 109.47271 * 266.47467 * 12 11 9 36 36 H 1.09000 * 109.47553 * 26.47607 * 12 11 9 37 37 H 1.09007 * 109.47192 * 146.48120 * 12 11 9 38 38 H 1.08999 * 109.46841 * 60.00433 * 15 13 11 39 39 H 1.08999 * 109.47171 * 180.02562 * 15 13 11 40 40 H 1.08997 * 109.46721 * 300.00214 * 15 13 11 41 41 H 0.97005 * 119.99815 * 180.02562 * 19 18 16 42 42 H 1.07997 * 120.07578 * 180.23460 * 24 8 7 43 43 H 1.08998 * 109.46972 * 299.99638 * 27 26 25 44 44 H 1.08990 * 109.47094 * 60.00412 * 27 26 25 45 45 H 1.09003 * 109.47025 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 8 3.1268 1.2411 0.9527 5 6 3.9086 2.3443 1.0789 6 6 3.6554 3.4655 0.3003 7 6 4.4422 4.5893 0.4287 8 6 5.5043 4.5985 1.3362 9 6 6.3514 5.7998 1.4713 10 8 7.4635 5.7083 1.9541 11 7 5.8920 6.9981 1.0595 12 6 4.5016 7.1378 0.6200 13 6 6.7832 8.1608 1.0515 14 1 7.7697 7.8650 1.4084 15 6 6.2135 9.2464 1.9668 16 6 6.8974 8.6965 -0.3526 17 1 6.3595 8.2189 -1.1581 18 6 7.6884 9.7963 -0.6086 19 7 8.3430 10.3782 0.3725 20 14 7.8293 10.4608 -2.3487 21 1 6.4854 10.8645 -2.8347 22 1 8.7328 11.6393 -2.3569 23 1 8.3813 9.4071 -3.2377 24 6 5.7594 3.4702 2.1199 25 6 4.9635 2.3486 1.9902 26 8 5.2093 1.2485 2.7510 27 6 6.3063 1.3229 3.6638 28 1 -0.5400 -0.9352 0.0004 29 1 -0.5399 0.9353 -0.0004 30 1 1.8499 -0.9354 -0.0004 31 1 1.3856 2.1160 0.2660 32 1 2.4756 1.4867 -0.9927 33 1 2.8367 3.4586 -0.4040 34 1 4.2402 5.4618 -0.1749 35 1 4.4478 7.0114 -0.4614 36 1 3.8889 6.3782 1.1055 37 1 4.1333 8.1280 0.8887 38 1 6.1310 8.8589 2.9823 39 1 6.8764 10.1117 1.9605 40 1 5.2272 9.5421 1.6094 41 1 8.8993 11.1523 0.1925 42 1 6.5772 3.4748 2.8253 43 1 7.2272 1.5083 3.1108 44 1 6.1368 2.1355 4.3701 45 1 6.3921 0.3814 4.2064 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264023107.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:51:10 Heat of formation + Delta-G solvation = -32.638271 kcal Electronic energy + Delta-G solvation = -26765.064036 eV Core-core repulsion = 22943.584442 eV Total energy + Delta-G solvation = -3821.479595 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.76988 -39.22765 -38.64221 -36.56393 -35.44850 -34.36922 -32.94877 -30.60249 -30.41026 -29.05041 -27.18256 -26.81487 -26.48838 -25.23452 -23.26662 -22.29608 -21.06611 -20.21464 -19.19427 -18.19069 -17.59386 -16.84245 -16.44361 -16.32758 -15.65252 -15.49035 -15.37443 -15.14942 -14.73666 -14.48878 -14.45587 -13.91433 -13.44761 -13.24415 -13.00352 -12.72764 -12.57572 -12.48671 -12.30444 -11.84211 -11.58324 -11.48141 -11.39094 -11.34571 -11.13861 -11.02779 -10.83203 -10.70873 -10.49163 -10.27610 -10.15613 -9.86062 -9.20597 -9.06053 -8.76517 -8.44477 -7.83717 -7.60504 -6.08744 -4.17278 1.04320 1.34380 1.70797 3.13284 3.21172 3.25390 3.26936 3.32133 3.34220 3.89316 4.05152 4.38545 4.45342 4.67053 4.82132 4.83554 4.92294 5.01708 5.11186 5.13957 5.17478 5.22487 5.30217 5.31917 5.46198 5.49015 5.63096 5.66878 5.96219 6.03397 6.13745 6.16115 6.22336 6.26533 6.42975 6.56033 6.76311 6.82456 6.95357 7.04599 7.41221 7.48657 7.50511 7.69401 8.00176 8.16705 8.48550 8.79988 9.00461 9.49258 10.96470 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.016634 B = 0.003065 C = 0.002737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1682.854617 B = 9132.419606 C =10226.836971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.152 4.152 3 C 0.083 3.917 4 O -0.300 6.300 5 C 0.116 3.884 6 C -0.186 4.186 7 C -0.102 4.102 8 C -0.119 4.119 9 C 0.548 3.452 10 O -0.551 6.551 11 N -0.585 5.585 12 C 0.073 3.927 13 C 0.258 3.742 14 H 0.064 0.936 15 C -0.147 4.147 16 C -0.527 4.527 17 H 0.059 0.941 18 C 0.065 3.935 19 N -0.887 5.887 20 Si 0.899 3.101 21 H -0.277 1.277 22 H -0.286 1.286 23 H -0.277 1.277 24 C -0.118 4.118 25 C 0.086 3.914 26 O -0.308 6.308 27 C 0.024 3.976 28 H 0.107 0.893 29 H 0.100 0.900 30 H 0.119 0.881 31 H 0.068 0.932 32 H 0.073 0.927 33 H 0.137 0.863 34 H 0.160 0.840 35 H 0.056 0.944 36 H 0.068 0.932 37 H 0.071 0.929 38 H 0.012 0.988 39 H 0.094 0.906 40 H 0.030 0.970 41 H 0.264 0.736 42 H 0.146 0.854 43 H 0.057 0.943 44 H 0.056 0.944 45 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.235 -17.020 1.233 22.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.170 4.170 3 C 0.008 3.992 4 O -0.214 6.214 5 C 0.070 3.930 6 C -0.205 4.205 7 C -0.120 4.120 8 C -0.122 4.122 9 C 0.335 3.665 10 O -0.431 6.431 11 N -0.315 5.315 12 C -0.070 4.070 13 C 0.158 3.842 14 H 0.082 0.918 15 C -0.206 4.206 16 C -0.566 4.566 17 H 0.077 0.923 18 C -0.138 4.138 19 N -0.525 5.525 20 Si 0.727 3.273 21 H -0.202 1.202 22 H -0.212 1.212 23 H -0.202 1.202 24 C -0.137 4.137 25 C 0.041 3.959 26 O -0.222 6.222 27 C -0.071 4.071 28 H 0.125 0.875 29 H 0.118 0.882 30 H 0.137 0.863 31 H 0.086 0.914 32 H 0.091 0.909 33 H 0.155 0.845 34 H 0.177 0.823 35 H 0.074 0.926 36 H 0.087 0.913 37 H 0.090 0.910 38 H 0.031 0.969 39 H 0.113 0.887 40 H 0.049 0.951 41 H 0.074 0.926 42 H 0.163 0.837 43 H 0.076 0.924 44 H 0.075 0.925 45 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -13.605 -17.220 1.628 22.006 hybrid contribution 0.147 0.720 -1.112 1.333 sum -13.458 -16.500 0.515 21.298 Atomic orbital electron populations 1.23873 0.95409 1.02540 0.99309 1.22670 0.95621 0.97862 1.00863 1.21861 0.88043 0.96824 0.92429 1.86129 1.41854 1.35046 1.58341 1.18390 0.91379 0.87303 0.95940 1.21018 1.03757 0.92989 1.02703 1.22142 0.93229 0.98803 0.97825 1.19928 0.97726 0.95267 0.99287 1.18091 0.86338 0.83022 0.79024 1.90720 1.20898 1.85772 1.45679 1.48117 1.11809 1.09796 1.61758 1.22170 0.83446 1.02585 0.98807 1.18983 0.89594 0.79876 0.95699 0.91794 1.22091 1.00533 1.02302 0.95658 1.21272 1.29092 1.13165 0.93065 0.92291 1.24892 0.95107 0.96398 0.97358 1.69874 1.29653 1.21818 1.31177 0.86540 0.77981 0.78376 0.84399 1.20219 1.21161 1.20225 1.21157 0.99864 0.91325 1.01384 1.18029 0.95396 0.87839 0.94637 1.86135 1.50200 1.34607 1.51274 1.23087 0.88430 1.03481 0.92074 0.87515 0.88197 0.86263 0.91351 0.90878 0.84488 0.82328 0.92571 0.91332 0.91021 0.96863 0.88737 0.95057 0.92591 0.83668 0.92391 0.92545 0.88300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.09 14.31 29.01 0.42 -0.68 16 2 C -0.15 -1.20 9.89 -36.03 -0.36 -1.55 16 3 C 0.08 0.75 5.15 36.00 0.19 0.93 16 4 O -0.30 -3.86 9.89 -33.78 -0.33 -4.19 16 5 C 0.12 1.60 6.71 -38.93 -0.26 1.34 16 6 C -0.19 -2.29 9.01 -39.53 -0.36 -2.65 16 7 C -0.10 -1.46 7.60 -39.20 -0.30 -1.75 16 8 C -0.12 -2.06 5.57 -104.97 -0.58 -2.64 16 9 C 0.55 11.87 7.51 -12.44 -0.09 11.77 16 10 O -0.55 -13.91 15.88 5.29 0.08 -13.82 16 11 N -0.58 -12.61 2.75 -176.46 -0.49 -13.10 16 12 C 0.07 1.21 7.91 59.84 0.47 1.69 16 13 C 0.26 6.61 2.63 -69.08 -0.18 6.43 16 14 H 0.06 1.90 6.92 -51.93 -0.36 1.54 16 15 C -0.15 -3.52 8.94 37.16 0.33 -3.19 16 16 C -0.53 -14.13 8.37 -34.44 -0.29 -14.42 16 17 H 0.06 1.54 7.55 -52.49 -0.40 1.14 16 18 C 0.06 1.76 5.30 -17.82 -0.09 1.67 16 19 N -0.89 -24.98 11.32 55.43 0.63 -24.35 16 20 Si 0.90 20.87 29.54 -169.99 -5.02 15.85 16 21 H -0.28 -6.25 7.11 56.52 0.40 -5.84 16 22 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 23 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 24 C -0.12 -1.89 8.57 -39.06 -0.33 -2.22 16 25 C 0.09 1.29 6.69 -39.18 -0.26 1.03 16 26 O -0.31 -4.33 10.28 -34.38 -0.35 -4.68 16 27 C 0.02 0.25 9.81 101.05 0.99 1.25 16 28 H 0.11 0.52 8.06 -52.49 -0.42 0.10 16 29 H 0.10 0.54 7.90 -52.49 -0.41 0.12 16 30 H 0.12 0.91 8.06 -52.48 -0.42 0.49 16 31 H 0.07 0.53 7.37 -51.93 -0.38 0.15 16 32 H 0.07 0.58 7.66 -51.93 -0.40 0.18 16 33 H 0.14 1.25 6.27 -52.49 -0.33 0.92 16 34 H 0.16 2.10 4.02 -52.49 -0.21 1.89 16 35 H 0.06 0.87 6.88 -51.93 -0.36 0.51 16 36 H 0.07 0.95 5.27 -51.93 -0.27 0.68 16 37 H 0.07 1.18 6.44 -51.92 -0.33 0.85 16 38 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 39 H 0.09 2.47 6.07 -51.93 -0.32 2.16 16 40 H 0.03 0.68 6.68 -51.93 -0.35 0.33 16 41 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 42 H 0.15 2.29 6.01 -52.49 -0.32 1.97 16 43 H 0.06 0.59 7.66 -51.93 -0.40 0.20 16 44 H 0.06 0.56 7.66 -51.93 -0.40 0.16 16 45 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 366.01 15.07 5.52 5.52 Total: -1.00 -32.81 366.01 -6.73 -39.55 By element: Atomic # 1 Polarization: 8.30 SS G_CDS: -6.05 Total: 2.24 kcal Atomic # 6 Polarization: -2.30 SS G_CDS: -0.71 Total: -3.01 kcal Atomic # 7 Polarization: -37.59 SS G_CDS: 0.14 Total: -37.44 kcal Atomic # 8 Polarization: -22.09 SS G_CDS: -0.60 Total: -22.70 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -32.81 -6.73 -39.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264023107.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.908 kcal (2) G-P(sol) polarization free energy of solvation -32.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds