Wall clock time and date at job start Tue Mar 31 2020 12:51:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50696 * 120.00463 * 2 1 4 4 O 1.42901 * 109.47158 * 134.99823 * 3 2 1 5 5 C 1.35802 * 117.00011 * 180.02562 * 4 3 2 6 6 C 1.38833 * 119.92873 * 0.02562 * 5 4 3 7 7 C 1.37788 * 120.15315 * 179.72364 * 6 5 4 8 8 C 1.39702 * 120.00000 * 0.50916 * 7 6 5 9 9 C 1.47611 * 120.07142 * 179.77042 * 8 7 6 10 10 O 1.21584 * 119.99630 * 200.43575 * 9 8 7 11 11 N 1.34773 * 119.99960 * 20.43232 * 9 8 7 12 12 C 1.46494 * 119.99932 * 6.95199 * 11 9 8 13 13 C 1.46498 * 119.99798 * 186.94436 * 11 9 8 14 14 H 1.09000 * 109.47384 * 0.02562 * 13 11 9 15 15 C 1.53003 * 109.47399 * 240.00118 * 13 11 9 16 16 C 1.50708 * 109.46979 * 120.00141 * 13 11 9 17 17 H 1.07998 * 119.99897 * 0.02562 * 16 13 11 18 18 C 1.37873 * 120.00215 * 180.02562 * 16 13 11 19 19 N 1.31519 * 119.99802 * 359.97438 * 18 16 13 20 20 Si 1.86797 * 120.00160 * 180.02562 * 18 16 13 21 21 H 1.48499 * 109.46935 * 59.99927 * 20 18 16 22 22 H 1.48502 * 109.47189 * 179.97438 * 20 18 16 23 23 H 1.48499 * 109.46951 * 299.99994 * 20 18 16 24 24 C 1.39731 * 119.85893 * 359.49298 * 8 7 6 25 25 C 1.38147 * 119.85103 * 0.25004 * 24 8 7 26 26 O 1.35993 * 120.00381 * 179.97438 * 25 24 8 27 27 C 1.42904 * 117.00049 * 0.02562 * 26 25 24 28 28 H 1.07994 * 120.00266 * 180.02562 * 1 2 3 29 29 H 1.07997 * 119.99545 * 0.02562 * 1 2 3 30 30 H 1.08006 * 119.99543 * 180.02562 * 2 1 3 31 31 H 1.09004 * 109.46971 * 14.99878 * 3 2 1 32 32 H 1.09002 * 109.47340 * 255.00072 * 3 2 1 33 33 H 1.08001 * 119.92365 * 0.02562 * 6 5 4 34 34 H 1.08000 * 120.00366 * 180.28238 * 7 6 5 35 35 H 1.09006 * 109.47271 * 266.47467 * 12 11 9 36 36 H 1.09000 * 109.47553 * 26.47607 * 12 11 9 37 37 H 1.09007 * 109.47192 * 146.48120 * 12 11 9 38 38 H 1.08999 * 109.46841 * 60.00433 * 15 13 11 39 39 H 1.08999 * 109.47171 * 180.02562 * 15 13 11 40 40 H 1.08997 * 109.46721 * 300.00214 * 15 13 11 41 41 H 0.97005 * 119.99815 * 180.02562 * 19 18 16 42 42 H 1.07997 * 120.07578 * 180.23460 * 24 8 7 43 43 H 1.08998 * 109.46972 * 299.99638 * 27 26 25 44 44 H 1.08990 * 109.47094 * 60.00412 * 27 26 25 45 45 H 1.09003 * 109.47025 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 8 3.1268 1.2411 0.9527 5 6 3.9086 2.3443 1.0789 6 6 3.6554 3.4655 0.3003 7 6 4.4422 4.5893 0.4287 8 6 5.5043 4.5985 1.3362 9 6 6.3514 5.7998 1.4713 10 8 7.4635 5.7083 1.9541 11 7 5.8920 6.9981 1.0595 12 6 4.5016 7.1378 0.6200 13 6 6.7832 8.1608 1.0515 14 1 7.7697 7.8650 1.4084 15 6 6.2135 9.2464 1.9668 16 6 6.8974 8.6965 -0.3526 17 1 6.3595 8.2189 -1.1581 18 6 7.6884 9.7963 -0.6086 19 7 8.3430 10.3782 0.3725 20 14 7.8293 10.4608 -2.3487 21 1 6.4854 10.8645 -2.8347 22 1 8.7328 11.6393 -2.3569 23 1 8.3813 9.4071 -3.2377 24 6 5.7594 3.4702 2.1199 25 6 4.9635 2.3486 1.9902 26 8 5.2093 1.2485 2.7510 27 6 6.3063 1.3229 3.6638 28 1 -0.5400 -0.9352 0.0004 29 1 -0.5399 0.9353 -0.0004 30 1 1.8499 -0.9354 -0.0004 31 1 1.3856 2.1160 0.2660 32 1 2.4756 1.4867 -0.9927 33 1 2.8367 3.4586 -0.4040 34 1 4.2402 5.4618 -0.1749 35 1 4.4478 7.0114 -0.4614 36 1 3.8889 6.3782 1.1055 37 1 4.1333 8.1280 0.8887 38 1 6.1310 8.8589 2.9823 39 1 6.8764 10.1117 1.9605 40 1 5.2272 9.5421 1.6094 41 1 8.8993 11.1523 0.1925 42 1 6.5772 3.4748 2.8253 43 1 7.2272 1.5083 3.1108 44 1 6.1368 2.1355 4.3701 45 1 6.3921 0.3814 4.2064 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264023107.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:51:09 Heat of formation + Delta-G solvation = -52.655638 kcal Electronic energy + Delta-G solvation = -26765.932055 eV Core-core repulsion = 22943.584442 eV Total energy + Delta-G solvation = -3822.347613 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.91683 -40.68408 -39.62350 -37.75618 -37.24708 -35.07070 -34.75497 -32.12722 -31.54920 -30.49238 -28.23337 -27.91993 -27.55411 -27.29524 -24.62882 -23.33787 -22.60458 -20.95714 -20.56311 -19.30565 -18.91594 -18.35871 -17.89167 -17.29777 -17.06391 -16.88552 -16.48134 -16.31357 -16.17804 -15.93340 -15.61125 -14.98616 -14.75077 -14.47028 -14.32444 -14.11064 -13.72109 -13.53556 -13.52527 -13.48377 -12.99826 -12.90148 -12.74725 -12.69028 -12.45454 -12.24768 -12.20241 -12.17160 -12.07283 -11.93821 -11.65478 -11.18204 -10.77588 -10.50468 -10.38970 -9.88652 -9.36952 -8.91170 -8.13869 -6.31102 -0.17309 0.24417 1.16254 1.43243 1.45836 1.53110 1.85153 2.18861 2.30286 2.32362 2.47594 2.72713 3.14107 3.58760 3.67378 3.90016 3.97018 4.08621 4.13662 4.15759 4.33426 4.36522 4.39549 4.40991 4.57060 4.59199 4.65831 4.68133 4.70314 4.87173 4.92669 4.96141 5.01157 5.04285 5.11632 5.26840 5.44629 5.46086 5.63123 5.65967 5.66317 5.71254 6.01359 6.03640 6.14494 6.49012 6.74929 6.76762 7.26467 7.43877 8.90535 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.016634 B = 0.003065 C = 0.002737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1682.854617 B = 9132.419606 C =10226.836971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.177 4.177 3 C 0.074 3.926 4 O -0.314 6.314 5 C 0.122 3.878 6 C -0.171 4.171 7 C -0.093 4.093 8 C -0.144 4.144 9 C 0.539 3.461 10 O -0.605 6.605 11 N -0.591 5.591 12 C 0.068 3.932 13 C 0.262 3.738 14 H 0.007 0.993 15 C -0.134 4.134 16 C -0.539 4.539 17 H 0.065 0.935 18 C 0.014 3.986 19 N -0.918 5.918 20 Si 0.967 3.033 21 H -0.259 1.259 22 H -0.286 1.286 23 H -0.277 1.277 24 C -0.125 4.125 25 C 0.076 3.924 26 O -0.320 6.320 27 C 0.019 3.981 28 H 0.120 0.880 29 H 0.112 0.888 30 H 0.114 0.886 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.179 0.821 34 H 0.174 0.826 35 H 0.074 0.926 36 H 0.100 0.900 37 H 0.073 0.927 38 H 0.017 0.983 39 H 0.069 0.931 40 H 0.051 0.949 41 H 0.265 0.735 42 H 0.135 0.865 43 H 0.054 0.946 44 H 0.057 0.943 45 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.617 -18.055 -0.695 25.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.195 4.195 3 C 0.000 4.000 4 O -0.228 6.228 5 C 0.076 3.924 6 C -0.189 4.189 7 C -0.111 4.111 8 C -0.147 4.147 9 C 0.329 3.671 10 O -0.489 6.489 11 N -0.320 5.320 12 C -0.074 4.074 13 C 0.160 3.840 14 H 0.025 0.975 15 C -0.192 4.192 16 C -0.577 4.577 17 H 0.084 0.916 18 C -0.185 4.185 19 N -0.557 5.557 20 Si 0.792 3.208 21 H -0.184 1.184 22 H -0.211 1.211 23 H -0.203 1.203 24 C -0.145 4.145 25 C 0.031 3.969 26 O -0.234 6.234 27 C -0.076 4.076 28 H 0.138 0.862 29 H 0.130 0.870 30 H 0.132 0.868 31 H 0.105 0.895 32 H 0.104 0.896 33 H 0.196 0.804 34 H 0.191 0.809 35 H 0.092 0.908 36 H 0.118 0.882 37 H 0.091 0.909 38 H 0.036 0.964 39 H 0.088 0.912 40 H 0.070 0.930 41 H 0.074 0.926 42 H 0.153 0.847 43 H 0.072 0.928 44 H 0.076 0.924 45 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -17.045 -18.272 -0.310 24.990 hybrid contribution 1.110 0.878 -0.472 1.492 sum -15.934 -17.394 -0.781 23.602 Atomic orbital electron populations 1.24114 0.94886 1.03807 0.96653 1.22663 0.96213 0.97352 1.03307 1.22201 0.87418 0.98119 0.92229 1.86136 1.42560 1.34647 1.59432 1.18595 0.90758 0.88004 0.95076 1.21356 1.03878 0.91293 1.02351 1.22250 0.92071 1.00054 0.96684 1.19603 0.99177 0.93775 1.02146 1.18804 0.86214 0.84180 0.77860 1.90673 1.23420 1.86657 1.48121 1.48088 1.13303 1.08726 1.61855 1.22497 0.80797 1.03869 1.00205 1.18596 0.88344 0.81486 0.95577 0.97452 1.21888 1.00773 1.00800 0.95743 1.21542 1.29299 1.13280 0.93605 0.91638 1.25768 0.94675 0.96731 1.01373 1.70030 1.30218 1.22175 1.33299 0.85474 0.78605 0.77433 0.79298 1.18391 1.21121 1.20251 1.21064 1.00171 0.91718 1.01524 1.18162 0.95816 0.87617 0.95317 1.86120 1.51268 1.34351 1.51671 1.23316 0.87390 1.05194 0.91686 0.86229 0.86969 0.86811 0.89510 0.89557 0.80389 0.80907 0.90764 0.88183 0.90869 0.96382 0.91204 0.92992 0.92632 0.84701 0.92768 0.92415 0.85391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.44 14.31 67.78 0.97 -0.47 16 2 C -0.18 -2.31 9.89 25.65 0.25 -2.06 16 3 C 0.07 1.07 5.15 71.23 0.37 1.44 16 4 O -0.31 -7.26 9.89 -77.31 -0.76 -8.03 16 5 C 0.12 3.09 6.71 22.69 0.15 3.24 16 6 C -0.17 -3.57 9.01 22.31 0.20 -3.37 16 7 C -0.09 -2.41 7.60 22.52 0.17 -2.24 16 8 C -0.14 -4.98 5.57 -20.09 -0.11 -5.09 16 9 C 0.54 24.22 7.51 86.72 0.65 24.87 16 10 O -0.60 -32.73 15.88 -3.98 -0.06 -32.79 16 11 N -0.59 -25.79 2.75 -830.46 -2.29 -28.08 16 12 C 0.07 2.10 7.91 127.77 1.01 3.11 16 13 C 0.26 13.86 2.63 44.25 0.12 13.97 16 14 H 0.01 0.48 6.92 -2.39 -0.02 0.46 16 15 C -0.13 -6.53 8.94 71.98 0.64 -5.89 16 16 C -0.54 -29.13 8.37 25.60 0.21 -28.92 16 17 H 0.07 3.37 7.55 -2.91 -0.02 3.35 16 18 C 0.01 0.77 5.30 84.65 0.45 1.22 16 19 N -0.92 -53.09 11.32 21.45 0.24 -52.85 16 20 Si 0.97 42.60 29.54 68.60 2.03 44.63 16 21 H -0.26 -10.66 7.11 99.48 0.71 -9.95 16 22 H -0.29 -12.47 7.11 99.48 0.71 -11.76 16 23 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 24 C -0.12 -4.09 8.57 22.61 0.19 -3.89 16 25 C 0.08 2.23 6.69 22.53 0.15 2.38 16 26 O -0.32 -8.82 10.28 -79.45 -0.82 -9.63 16 27 C 0.02 0.39 9.81 113.37 1.11 1.50 16 28 H 0.12 0.78 8.06 -2.91 -0.02 0.75 16 29 H 0.11 0.75 7.90 -2.91 -0.02 0.73 16 30 H 0.11 1.56 8.06 -2.91 -0.02 1.54 16 31 H 0.09 0.94 7.37 -2.39 -0.02 0.92 16 32 H 0.09 1.01 7.66 -2.39 -0.02 1.00 16 33 H 0.18 2.24 6.27 -2.91 -0.02 2.22 16 34 H 0.17 3.97 4.02 -2.91 -0.01 3.96 16 35 H 0.07 2.06 6.88 -2.38 -0.02 2.04 16 36 H 0.10 2.48 5.27 -2.39 -0.01 2.47 16 37 H 0.07 2.26 6.44 -2.38 -0.02 2.24 16 38 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 39 H 0.07 3.77 6.07 -2.39 -0.01 3.76 16 40 H 0.05 2.26 6.68 -2.39 -0.02 2.25 16 41 H 0.26 14.52 8.31 -92.70 -0.77 13.75 16 42 H 0.14 4.55 6.01 -2.91 -0.02 4.53 16 43 H 0.05 1.15 7.66 -2.39 -0.02 1.14 16 44 H 0.06 1.17 7.66 -2.39 -0.02 1.15 16 45 H 0.13 1.84 8.14 -2.39 -0.02 1.82 16 Total: -1.00 -75.14 366.01 5.89 -69.24 By element: Atomic # 1 Polarization: 16.70 SS G_CDS: 1.01 Total: 17.71 kcal Atomic # 6 Polarization: -6.75 SS G_CDS: 6.55 Total: -0.20 kcal Atomic # 7 Polarization: -78.88 SS G_CDS: -2.04 Total: -80.92 kcal Atomic # 8 Polarization: -48.81 SS G_CDS: -1.64 Total: -50.45 kcal Atomic # 14 Polarization: 42.60 SS G_CDS: 2.03 Total: 44.63 kcal Total: -75.14 5.89 -69.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264023107.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.587 kcal (2) G-P(sol) polarization free energy of solvation -75.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds