Wall clock time and date at job start Tue Mar 31 2020 12:51:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50708 * 120.00216 * 2 1 4 4 O 1.42896 * 109.47210 * 135.00291 * 3 2 1 5 5 C 1.35793 * 117.00346 * 180.02562 * 4 3 2 6 6 C 1.38842 * 119.92677 * 0.02562 * 5 4 3 7 7 C 1.37788 * 120.14886 * 179.71915 * 6 5 4 8 8 C 1.39704 * 120.00269 * 0.50860 * 7 6 5 9 9 C 1.47614 * 120.06876 * 179.76314 * 8 7 6 10 10 O 1.21575 * 119.99741 * 200.43366 * 9 8 7 11 11 N 1.34771 * 119.99716 * 20.43908 * 9 8 7 12 12 C 1.46501 * 120.00526 * 6.94040 * 11 9 8 13 13 C 1.46502 * 119.99664 * 186.94718 * 11 9 8 14 14 H 1.08996 * 109.47440 * 359.97438 * 13 11 9 15 15 C 1.53001 * 109.47467 * 119.99798 * 13 11 9 16 16 C 1.50705 * 109.46799 * 239.99559 * 13 11 9 17 17 H 1.07991 * 120.00081 * 0.02562 * 16 13 11 18 18 C 1.37876 * 119.99767 * 179.97438 * 16 13 11 19 19 N 1.31520 * 120.00009 * 0.02562 * 18 16 13 20 20 Si 1.86799 * 119.99973 * 180.02562 * 18 16 13 21 21 H 1.48501 * 109.47419 * 180.02562 * 20 18 16 22 22 H 1.48502 * 109.47100 * 300.00198 * 20 18 16 23 23 H 1.48501 * 109.47231 * 60.00279 * 20 18 16 24 24 C 1.39731 * 119.85691 * 359.49782 * 8 7 6 25 25 C 1.38132 * 119.85401 * 0.24264 * 24 8 7 26 26 O 1.36001 * 120.00609 * 179.97438 * 25 24 8 27 27 C 1.42898 * 116.99844 * 0.02562 * 26 25 24 28 28 H 1.07996 * 120.00159 * 179.97438 * 1 2 3 29 29 H 1.08005 * 119.99854 * 359.97438 * 1 2 3 30 30 H 1.08001 * 120.00315 * 180.02562 * 2 1 3 31 31 H 1.08998 * 109.46416 * 15.00723 * 3 2 1 32 32 H 1.08997 * 109.47330 * 255.01227 * 3 2 1 33 33 H 1.08001 * 119.92429 * 0.02562 * 6 5 4 34 34 H 1.07997 * 119.99689 * 180.28505 * 7 6 5 35 35 H 1.08998 * 109.46882 * 266.51014 * 12 11 9 36 36 H 1.08997 * 109.47019 * 26.50796 * 12 11 9 37 37 H 1.08995 * 109.47325 * 146.50743 * 12 11 9 38 38 H 1.08995 * 109.47357 * 179.97438 * 15 13 11 39 39 H 1.08999 * 109.46668 * 300.00011 * 15 13 11 40 40 H 1.09002 * 109.47350 * 59.99418 * 15 13 11 41 41 H 0.97000 * 119.99665 * 179.97438 * 19 18 16 42 42 H 1.08003 * 120.07082 * 180.22932 * 24 8 7 43 43 H 1.09002 * 109.46910 * 299.99510 * 27 26 25 44 44 H 1.08998 * 109.47255 * 59.99013 * 27 26 25 45 45 H 1.09001 * 109.47277 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 8 3.1268 1.2413 0.9526 5 6 3.9086 2.3444 1.0788 6 6 3.6552 3.4657 0.3003 7 6 4.4420 4.5895 0.4287 8 6 5.5041 4.5987 1.3363 9 6 6.3512 5.8001 1.4714 10 8 7.4632 5.7085 1.9542 11 7 5.8917 6.9982 1.0596 12 6 4.5012 7.1380 0.6200 13 6 6.7829 8.1610 1.0514 14 1 7.7692 7.8654 1.4091 15 6 6.8987 8.7049 -0.3739 16 6 6.2217 9.2303 1.9530 17 1 5.2944 9.0605 2.4797 18 6 6.8929 10.4249 2.1063 19 7 8.0226 10.6314 1.4652 20 14 6.1977 11.7500 3.2244 21 1 7.1009 12.9287 3.2161 22 1 4.8539 12.1533 2.7378 23 1 6.0853 11.2217 4.6077 24 6 5.7593 3.4703 2.1199 25 6 4.9635 2.3487 1.9901 26 8 5.2095 1.2485 2.7508 27 6 6.3065 1.3229 3.6635 28 1 -0.5400 -0.9353 -0.0004 29 1 -0.5400 0.9354 0.0004 30 1 1.8500 -0.9353 -0.0004 31 1 1.3855 2.1160 0.2661 32 1 2.4754 1.4869 -0.9927 33 1 2.8365 3.4588 -0.4041 34 1 4.2399 5.4620 -0.1748 35 1 4.4476 7.0111 -0.4613 36 1 3.8885 6.3787 1.1057 37 1 4.1331 8.1282 0.8883 38 1 7.5614 9.5703 -0.3799 39 1 7.3046 7.9315 -1.0260 40 1 5.9123 9.0006 -0.7313 41 1 8.4945 11.4720 1.5728 42 1 6.5772 3.4749 2.8252 43 1 7.2273 1.5083 3.1104 44 1 6.1371 2.1356 4.3698 45 1 6.3918 0.3817 4.2066 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264023108.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:51:12 Heat of formation + Delta-G solvation = -53.251603 kcal Electronic energy + Delta-G solvation = -26752.859904 eV Core-core repulsion = 22930.486448 eV Total energy + Delta-G solvation = -3822.373456 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.91450 -40.67941 -39.62409 -37.75324 -37.24114 -35.07073 -34.75553 -32.11256 -31.54674 -30.50058 -28.23838 -27.90195 -27.55707 -27.28962 -24.61666 -23.34777 -22.59828 -20.93460 -20.56026 -19.31837 -18.94191 -18.31657 -17.90426 -17.30486 -17.07557 -16.96607 -16.48250 -16.31223 -16.09978 -15.92125 -15.61119 -14.92526 -14.76891 -14.42495 -14.22084 -14.10592 -13.85680 -13.53260 -13.52537 -13.47513 -12.99717 -12.88249 -12.79110 -12.70138 -12.45745 -12.22257 -12.21045 -12.15785 -12.09106 -11.93945 -11.64623 -11.20658 -10.76448 -10.50736 -10.38782 -9.88377 -9.36911 -8.90885 -8.14627 -6.31186 -0.16886 0.24774 1.16448 1.41520 1.44130 1.51400 1.85006 2.19181 2.29993 2.31845 2.47440 2.73859 3.13394 3.58666 3.67587 3.90122 3.97012 4.08660 4.14116 4.16030 4.32508 4.36221 4.39817 4.42732 4.57231 4.59427 4.63741 4.67620 4.73762 4.88239 4.94775 4.98957 5.01189 5.05537 5.11401 5.26948 5.45012 5.48060 5.62061 5.66252 5.66529 5.71480 6.01566 6.04035 6.15939 6.49169 6.75310 6.76566 7.27044 7.43775 8.89617 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.018033 B = 0.002946 C = 0.002735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1552.374001 B = 9500.935199 C =10236.712867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.177 4.177 3 C 0.074 3.926 4 O -0.314 6.314 5 C 0.122 3.878 6 C -0.170 4.170 7 C -0.091 4.091 8 C -0.144 4.144 9 C 0.538 3.462 10 O -0.605 6.605 11 N -0.591 5.591 12 C 0.064 3.936 13 C 0.261 3.739 14 H 0.007 0.993 15 C -0.131 4.131 16 C -0.540 4.540 17 H 0.061 0.939 18 C 0.016 3.984 19 N -0.917 5.917 20 Si 0.965 3.035 21 H -0.283 1.283 22 H -0.260 1.260 23 H -0.280 1.280 24 C -0.126 4.126 25 C 0.075 3.925 26 O -0.320 6.320 27 C 0.019 3.981 28 H 0.119 0.881 29 H 0.112 0.888 30 H 0.114 0.886 31 H 0.086 0.914 32 H 0.088 0.912 33 H 0.180 0.820 34 H 0.177 0.823 35 H 0.084 0.916 36 H 0.096 0.904 37 H 0.071 0.929 38 H 0.068 0.932 39 H 0.022 0.978 40 H 0.051 0.949 41 H 0.265 0.735 42 H 0.133 0.867 43 H 0.055 0.945 44 H 0.055 0.945 45 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.478 -18.907 -4.721 25.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.195 4.195 3 C 0.000 4.000 4 O -0.228 6.228 5 C 0.076 3.924 6 C -0.189 4.189 7 C -0.109 4.109 8 C -0.147 4.147 9 C 0.328 3.672 10 O -0.488 6.488 11 N -0.320 5.320 12 C -0.077 4.077 13 C 0.159 3.841 14 H 0.025 0.975 15 C -0.190 4.190 16 C -0.578 4.578 17 H 0.079 0.921 18 C -0.184 4.184 19 N -0.556 5.556 20 Si 0.790 3.210 21 H -0.209 1.209 22 H -0.185 1.185 23 H -0.205 1.205 24 C -0.146 4.146 25 C 0.030 3.970 26 O -0.234 6.234 27 C -0.076 4.076 28 H 0.137 0.863 29 H 0.130 0.870 30 H 0.132 0.868 31 H 0.104 0.896 32 H 0.106 0.894 33 H 0.198 0.802 34 H 0.194 0.806 35 H 0.102 0.898 36 H 0.114 0.886 37 H 0.089 0.911 38 H 0.087 0.913 39 H 0.041 0.959 40 H 0.070 0.930 41 H 0.074 0.926 42 H 0.151 0.849 43 H 0.073 0.927 44 H 0.074 0.926 45 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -15.880 -19.141 -4.416 25.260 hybrid contribution 0.742 1.134 0.817 1.582 sum -15.139 -18.006 -3.599 23.798 Atomic orbital electron populations 1.24114 0.94912 1.03791 0.96693 1.22667 0.96199 0.97381 1.03270 1.22205 0.87402 0.98079 0.92276 1.86133 1.42559 1.34662 1.59474 1.18603 0.90701 0.88073 0.95069 1.21374 1.03861 0.91252 1.02370 1.22257 0.91903 1.00008 0.96725 1.19607 0.99309 0.93636 1.02179 1.18823 0.86291 0.84204 0.77833 1.90676 1.23710 1.86760 1.47695 1.48093 1.13309 1.08418 1.62132 1.22531 0.80946 1.04064 1.00138 1.18594 0.89066 0.81982 0.94433 0.97487 1.21870 1.01226 1.00460 0.95441 1.21530 1.08794 0.99946 1.27541 0.92126 1.25730 0.95041 1.00489 0.97150 1.70016 1.16557 1.25882 1.43096 0.85514 0.78737 0.77969 0.78820 1.20862 1.18453 1.20535 1.21061 1.00231 0.91828 1.01495 1.18171 0.95873 0.87600 0.95350 1.86118 1.51256 1.34373 1.51676 1.23309 0.87432 1.05126 0.91690 0.86256 0.86989 0.86804 0.89571 0.89380 0.80243 0.80602 0.89835 0.88554 0.91054 0.91287 0.95940 0.92969 0.92597 0.84928 0.92676 0.92641 0.85370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.43 14.31 67.78 0.97 -0.46 16 2 C -0.18 -2.26 9.89 25.65 0.25 -2.01 16 3 C 0.07 1.04 5.15 71.24 0.37 1.41 16 4 O -0.31 -7.21 9.89 -77.22 -0.76 -7.97 16 5 C 0.12 3.06 6.71 22.70 0.15 3.21 16 6 C -0.17 -3.45 9.01 22.31 0.20 -3.25 16 7 C -0.09 -2.28 7.60 22.52 0.17 -2.11 16 8 C -0.14 -4.96 5.57 -20.09 -0.11 -5.07 16 9 C 0.54 24.17 7.51 86.72 0.65 24.82 16 10 O -0.60 -32.93 15.88 -3.95 -0.06 -32.99 16 11 N -0.59 -25.73 2.75 -830.49 -2.29 -28.02 16 12 C 0.06 2.00 7.67 127.77 0.98 2.98 16 13 C 0.26 13.80 2.63 44.25 0.12 13.92 16 14 H 0.01 0.45 6.92 -2.39 -0.02 0.44 16 15 C -0.13 -6.29 8.97 71.98 0.65 -5.65 16 16 C -0.54 -29.62 8.02 25.60 0.21 -29.42 16 17 H 0.06 3.23 7.28 -2.92 -0.02 3.21 16 18 C 0.02 0.86 5.30 84.65 0.45 1.31 16 19 N -0.92 -53.07 11.32 21.45 0.24 -52.83 16 20 Si 0.96 43.20 29.54 68.60 2.03 45.22 16 21 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 22 H -0.26 -10.89 7.11 99.48 0.71 -10.18 16 23 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 24 C -0.13 -4.17 8.57 22.61 0.19 -3.98 16 25 C 0.08 2.22 6.69 22.53 0.15 2.37 16 26 O -0.32 -8.93 10.28 -79.55 -0.82 -9.74 16 27 C 0.02 0.40 9.81 113.37 1.11 1.51 16 28 H 0.12 0.76 8.06 -2.91 -0.02 0.74 16 29 H 0.11 0.74 7.90 -2.91 -0.02 0.72 16 30 H 0.11 1.53 8.06 -2.91 -0.02 1.51 16 31 H 0.09 0.91 7.37 -2.39 -0.02 0.89 16 32 H 0.09 0.96 7.66 -2.39 -0.02 0.95 16 33 H 0.18 2.09 6.27 -2.91 -0.02 2.07 16 34 H 0.18 3.70 4.02 -2.91 -0.01 3.69 16 35 H 0.08 2.04 6.98 -2.39 -0.02 2.02 16 36 H 0.10 2.47 5.27 -2.39 -0.01 2.46 16 37 H 0.07 2.36 6.98 -2.39 -0.02 2.34 16 38 H 0.07 3.68 6.07 -2.39 -0.01 3.66 16 39 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 40 H 0.05 2.22 7.67 -2.39 -0.02 2.20 16 41 H 0.26 14.54 8.31 -92.71 -0.77 13.77 16 42 H 0.13 4.58 6.01 -2.91 -0.02 4.57 16 43 H 0.05 1.19 7.66 -2.39 -0.02 1.17 16 44 H 0.05 1.19 7.66 -2.39 -0.02 1.17 16 45 H 0.13 1.90 8.14 -2.39 -0.02 1.88 16 Total: -1.00 -75.99 366.80 5.85 -70.14 By element: Atomic # 1 Polarization: 15.61 SS G_CDS: 1.01 Total: 16.61 kcal Atomic # 6 Polarization: -6.93 SS G_CDS: 6.51 Total: -0.42 kcal Atomic # 7 Polarization: -78.80 SS G_CDS: -2.04 Total: -80.85 kcal Atomic # 8 Polarization: -49.06 SS G_CDS: -1.64 Total: -50.71 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 2.03 Total: 45.22 kcal Total: -75.99 5.85 -70.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264023108.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.891 kcal (2) G-P(sol) polarization free energy of solvation -75.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.142 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds