Wall clock time and date at job start Tue Mar 31 2020 12:28:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.47061 * 2 1 4 4 C 1.53003 * 109.47251 * 239.99670 * 2 1 3 5 5 C 1.53000 * 109.46891 * 174.99973 * 4 2 1 6 6 C 1.53003 * 109.46891 * 179.97438 * 5 4 2 7 7 O 1.42901 * 109.47155 * 179.97438 * 6 5 4 8 8 N 1.46496 * 109.47042 * 119.99289 * 2 1 3 9 9 C 1.34770 * 120.00490 * 274.99978 * 8 2 1 10 10 O 1.21723 * 120.00151 * 0.02562 * 9 8 2 11 11 C 1.46258 * 120.00182 * 179.97438 * 9 8 2 12 12 C 1.35027 * 120.00008 * 180.02562 * 11 9 8 13 13 C 1.46964 * 119.99926 * 179.97438 * 12 11 9 14 14 C 1.40020 * 120.09861 * 359.73030 * 13 12 11 15 15 C 1.37603 * 119.89320 * 179.69784 * 14 13 12 16 16 C 1.39173 * 120.09917 * 0.59281 * 15 14 13 17 17 O 1.35578 * 119.89673 * 179.69716 * 16 15 14 18 18 C 1.34774 * 116.99992 * 174.42211 * 17 16 15 19 19 H 1.08004 * 120.00102 * 5.06114 * 18 17 16 20 20 C 1.38714 * 120.00273 * 185.05801 * 18 17 16 21 21 N 1.31510 * 119.99873 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 120.00537 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47099 * 59.99852 * 22 20 18 24 24 H 1.48499 * 109.47620 * 179.97438 * 22 20 18 25 25 H 1.48505 * 109.47127 * 300.00338 * 22 20 18 26 26 C 1.39173 * 120.20619 * 359.68076 * 16 15 14 27 27 C 1.37596 * 120.09830 * 0.02562 * 26 16 15 28 28 H 1.08995 * 109.47250 * 300.00363 * 1 2 3 29 29 H 1.09004 * 109.46980 * 60.00377 * 1 2 3 30 30 H 1.08994 * 109.47043 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.46731 * 294.99998 * 4 2 1 32 32 H 1.08995 * 109.46735 * 54.99836 * 4 2 1 33 33 H 1.08998 * 109.46930 * 299.99575 * 5 4 2 34 34 H 1.08998 * 109.46962 * 59.99897 * 5 4 2 35 35 H 1.08997 * 109.47190 * 300.00295 * 6 5 4 36 36 H 1.09003 * 109.47034 * 59.99887 * 6 5 4 37 37 H 0.96702 * 113.99491 * 179.97438 * 7 6 5 38 38 H 0.97006 * 119.99910 * 95.00393 * 8 2 1 39 39 H 1.07997 * 119.99860 * 0.02562 * 11 9 8 40 40 H 1.07997 * 119.99617 * 359.97438 * 12 11 9 41 41 H 1.07997 * 120.05607 * 359.97438 * 14 13 12 42 42 H 1.08002 * 119.94914 * 180.27429 * 15 14 13 43 43 H 0.96999 * 120.00265 * 180.02562 * 21 20 18 44 44 H 1.08002 * 119.95232 * 179.97438 * 26 16 15 45 45 H 1.08003 * 120.04875 * 180.02562 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5649 -0.6133 -1.3136 6 6 4.0750 -1.3352 -2.5625 7 8 5.4991 -1.2338 -2.6230 8 7 2.0183 -0.6904 1.1962 9 6 2.1471 -0.0181 2.3571 10 8 1.8572 1.1629 2.4119 11 6 2.6340 -0.7076 3.5515 12 6 2.7625 -0.0340 4.7147 13 6 3.2513 -0.7270 5.9150 14 6 3.5790 -2.0871 5.8560 15 6 4.0422 -2.7303 6.9809 16 6 4.1734 -2.0340 8.1788 17 8 4.6244 -2.6733 9.2860 18 6 4.8389 -1.9200 10.3828 19 1 4.5749 -0.8727 10.3787 20 6 5.3989 -2.4896 11.5169 21 7 5.7208 -3.7647 11.5217 22 14 5.6956 -1.4457 13.0372 23 1 4.4045 -0.8893 13.5154 24 1 6.2979 -2.2848 14.1042 25 1 6.6199 -0.3330 12.7010 26 6 3.8435 -0.6835 8.2435 27 6 3.3852 -0.0307 7.1223 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0276 0.0005 31 1 1.7517 -1.7716 -1.2054 32 1 1.6054 -0.2619 -2.1369 33 1 3.8532 0.4369 -1.3574 34 1 3.9994 -1.0727 -0.4258 35 1 3.7866 -2.3854 -2.5183 36 1 3.6403 -0.8761 -3.4504 37 1 5.8921 -1.6705 -3.3910 38 1 2.2491 -1.6317 1.1528 39 1 2.8909 -1.7555 3.5030 40 1 2.5061 1.0139 4.7629 41 1 3.4727 -2.6294 4.9282 42 1 4.2994 -3.7782 6.9353 43 1 6.1120 -4.1631 12.3149 44 1 3.9465 -0.1473 9.1753 45 1 3.1298 1.0175 7.1733 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000268205073.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:28:50 Heat of formation + Delta-G solvation = -116.469336 kcal Electronic energy + Delta-G solvation = -24859.204796 eV Core-core repulsion = 21034.090014 eV Total energy + Delta-G solvation = -3825.114783 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.96994 -40.68923 -38.60234 -38.23835 -37.06455 -34.73045 -34.03775 -33.58373 -31.97331 -31.46884 -29.53506 -27.51129 -26.88668 -24.94169 -23.74302 -22.80393 -22.23301 -21.59467 -20.67933 -19.74437 -18.84058 -18.39862 -18.14630 -17.26351 -16.53899 -16.37190 -16.31846 -16.00216 -15.82723 -15.60670 -15.34121 -14.97535 -14.89260 -14.58989 -14.55171 -14.10600 -13.88084 -13.64702 -13.59672 -13.30882 -13.17684 -13.04615 -12.68178 -12.56489 -12.27816 -12.22850 -12.22511 -12.14364 -11.93024 -11.64804 -11.21876 -11.10464 -10.91276 -10.85179 -10.57377 -10.03565 -9.89517 -8.67866 -8.52038 -6.18275 -0.23754 0.58196 1.14709 1.35583 1.47274 1.51364 2.15445 2.32849 2.39816 2.86514 3.17748 3.26461 3.42378 3.81485 3.91809 3.95138 4.00960 4.08464 4.17208 4.29400 4.33754 4.38406 4.44707 4.48179 4.54958 4.65997 4.68462 4.77122 4.85889 4.88568 4.94558 5.02598 5.04295 5.19000 5.21147 5.29454 5.31333 5.33968 5.36766 5.57734 5.62960 5.65002 5.81651 5.97169 6.10330 6.65362 6.92078 6.92407 7.33961 7.69140 8.69737 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.021459 B = 0.001890 C = 0.001800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1304.472235 B =14810.152725 C =15554.190038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.139 3.861 3 H 0.063 0.937 4 C -0.110 4.110 5 C -0.124 4.124 6 C 0.073 3.927 7 O -0.604 6.604 8 N -0.710 5.710 9 C 0.549 3.451 10 O -0.596 6.596 11 C -0.246 4.246 12 C 0.013 3.987 13 C -0.170 4.170 14 C -0.038 4.038 15 C -0.207 4.207 16 C 0.129 3.871 17 O -0.219 6.219 18 C -0.418 4.418 19 H 0.105 0.895 20 C -0.019 4.019 21 N -0.913 5.913 22 Si 1.018 2.982 23 H -0.257 1.257 24 H -0.271 1.271 25 H -0.257 1.257 26 C -0.249 4.249 27 C -0.041 4.041 28 H 0.034 0.966 29 H 0.081 0.919 30 H 0.071 0.929 31 H 0.092 0.908 32 H 0.098 0.902 33 H 0.050 0.950 34 H 0.059 0.941 35 H 0.062 0.938 36 H 0.059 0.941 37 H 0.397 0.603 38 H 0.414 0.586 39 H 0.151 0.849 40 H 0.123 0.877 41 H 0.160 0.840 42 H 0.123 0.877 43 H 0.275 0.725 44 H 0.125 0.875 45 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.577 3.751 -27.331 28.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.035 3.965 3 H 0.081 0.919 4 C -0.148 4.148 5 C -0.162 4.162 6 C -0.004 4.004 7 O -0.413 6.413 8 N -0.361 5.361 9 C 0.340 3.660 10 O -0.479 6.479 11 C -0.266 4.266 12 C -0.007 4.007 13 C -0.171 4.171 14 C -0.056 4.056 15 C -0.226 4.226 16 C 0.077 3.923 17 O -0.124 6.124 18 C -0.493 4.493 19 H 0.122 0.878 20 C -0.218 4.218 21 N -0.550 5.550 22 Si 0.837 3.163 23 H -0.181 1.181 24 H -0.196 1.196 25 H -0.182 1.182 26 C -0.268 4.268 27 C -0.059 4.059 28 H 0.053 0.947 29 H 0.100 0.900 30 H 0.090 0.910 31 H 0.111 0.889 32 H 0.116 0.884 33 H 0.069 0.931 34 H 0.077 0.923 35 H 0.080 0.920 36 H 0.077 0.923 37 H 0.247 0.753 38 H 0.251 0.749 39 H 0.169 0.831 40 H 0.141 0.859 41 H 0.177 0.823 42 H 0.141 0.859 43 H 0.084 0.916 44 H 0.143 0.857 45 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -7.736 4.482 -26.603 28.065 hybrid contribution 0.517 -0.401 0.649 0.922 sum -7.219 4.082 -25.954 27.246 Atomic orbital electron populations 1.22131 0.94505 1.02912 1.02122 1.21011 0.94458 0.96787 0.84293 0.91890 1.21732 0.93711 1.02465 0.96868 1.21541 0.96003 1.00590 0.98056 1.22285 0.80329 0.99942 0.97827 1.86459 1.21641 1.80950 1.52237 1.45884 1.66749 1.14542 1.08963 1.18522 0.76811 0.86070 0.84553 1.90770 1.53206 1.17837 1.86109 1.22815 1.09539 1.01937 0.92330 1.22164 0.89155 0.98814 0.90586 1.18784 1.10146 0.94355 0.93802 1.21280 0.93608 0.93326 0.97337 1.20425 1.10208 1.00911 0.91040 1.20187 0.91986 0.92230 0.87892 1.83884 1.73231 1.37222 1.18083 1.21853 1.43135 0.94917 0.89423 0.87755 1.26615 0.95259 0.97808 1.02083 1.70141 1.40622 1.13106 1.31143 0.84648 0.79556 0.77219 0.74849 1.18109 1.19557 1.18176 1.21201 1.10203 0.94675 1.00725 1.21314 0.93907 0.99814 0.90911 0.94718 0.89983 0.90963 0.88945 0.88352 0.93122 0.92254 0.92007 0.92255 0.75339 0.74917 0.83127 0.85921 0.82263 0.85877 0.91582 0.85732 0.83882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.15 9.48 71.98 0.68 -1.46 16 2 C 0.14 2.05 2.57 44.99 0.12 2.17 16 3 H 0.06 1.29 7.58 -2.39 -0.02 1.27 16 4 C -0.11 -0.90 4.75 30.60 0.15 -0.75 16 5 C -0.12 -1.57 5.47 30.60 0.17 -1.40 16 6 C 0.07 0.72 7.05 71.98 0.51 1.23 16 7 O -0.60 -8.63 13.66 -148.98 -2.04 -10.67 16 8 N -0.71 -11.86 4.52 -446.91 -2.02 -13.88 16 9 C 0.55 13.69 7.70 86.33 0.66 14.36 16 10 O -0.60 -19.76 15.89 -4.42 -0.07 -19.83 16 11 C -0.25 -5.75 9.41 23.62 0.22 -5.52 16 12 C 0.01 0.35 9.45 23.82 0.23 0.58 16 13 C -0.17 -5.40 5.87 -20.13 -0.12 -5.52 16 14 C -0.04 -1.20 9.40 22.55 0.21 -0.99 16 15 C -0.21 -8.32 9.97 22.34 0.22 -8.09 16 16 C 0.13 6.21 6.66 22.72 0.15 6.36 16 17 O -0.22 -12.77 9.74 -20.28 -0.20 -12.97 16 18 C -0.42 -23.64 9.48 67.93 0.64 -23.00 16 19 H 0.11 5.40 5.18 -2.91 -0.02 5.38 16 20 C -0.02 -1.04 5.49 84.85 0.47 -0.58 16 21 N -0.91 -54.59 13.67 21.62 0.30 -54.29 16 22 Si 1.02 41.74 29.55 68.60 2.03 43.77 16 23 H -0.26 -9.90 7.11 99.48 0.71 -9.19 16 24 H -0.27 -10.69 7.11 99.48 0.71 -9.98 16 25 H -0.26 -9.96 7.11 99.48 0.71 -9.25 16 26 C -0.25 -10.57 9.14 22.34 0.20 -10.37 16 27 C -0.04 -1.44 9.78 22.55 0.22 -1.22 16 28 H 0.03 0.68 8.14 -2.39 -0.02 0.66 16 29 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.09 0.42 8.14 -2.39 -0.02 0.40 16 32 H 0.10 0.51 8.14 -2.39 -0.02 0.49 16 33 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 34 H 0.06 0.91 7.75 -2.39 -0.02 0.89 16 35 H 0.06 0.40 8.14 -2.39 -0.02 0.38 16 36 H 0.06 0.40 8.14 -2.39 -0.02 0.38 16 37 H 0.40 1.92 9.12 -74.06 -0.68 1.24 16 38 H 0.41 4.50 8.58 -92.70 -0.80 3.70 16 39 H 0.15 2.66 6.07 -2.91 -0.02 2.65 16 40 H 0.12 3.47 7.52 -2.91 -0.02 3.45 16 41 H 0.16 3.66 6.16 -2.91 -0.02 3.64 16 42 H 0.12 4.79 8.06 -2.91 -0.02 4.76 16 43 H 0.28 15.06 8.31 -92.71 -0.77 14.29 16 44 H 0.12 5.34 5.62 -2.91 -0.02 5.32 16 45 H 0.14 4.06 8.06 -2.91 -0.02 4.04 16 Total: -1.00 -77.49 383.19 2.28 -75.21 By element: Atomic # 1 Polarization: 27.33 SS G_CDS: -0.45 Total: 26.88 kcal Atomic # 6 Polarization: -38.95 SS G_CDS: 4.73 Total: -34.22 kcal Atomic # 7 Polarization: -66.45 SS G_CDS: -1.73 Total: -68.17 kcal Atomic # 8 Polarization: -41.16 SS G_CDS: -2.30 Total: -43.46 kcal Atomic # 14 Polarization: 41.74 SS G_CDS: 2.03 Total: 43.77 kcal Total: -77.49 2.28 -75.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000268205073.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.261 kcal (2) G-P(sol) polarization free energy of solvation -77.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.208 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds