Wall clock time and date at job start Tue Mar 31 2020 13:07:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 109.47321 * 2 1 4 4 C 1.53004 * 109.46745 * 240.00067 * 2 1 3 5 5 O 1.42898 * 109.47133 * 304.99991 * 4 2 1 6 6 C 1.42904 * 114.00019 * 180.02562 * 5 4 2 7 7 H 1.09003 * 110.75022 * 32.01753 * 6 5 4 8 8 C 1.55301 * 110.84950 * 155.71211 * 6 5 4 9 9 C 1.54943 * 100.94176 * 152.32380 * 8 6 5 10 10 O 1.43648 * 105.13958 * 323.55561 * 9 8 6 11 11 C 1.43244 * 109.96866 * 24.42546 * 10 9 8 12 12 N 1.46494 * 109.47217 * 120.00215 * 2 1 3 13 13 C 1.34772 * 119.99995 * 274.99626 * 12 2 1 14 14 O 1.21581 * 120.00154 * 0.02562 * 13 12 2 15 15 C 1.47648 * 120.00098 * 180.02562 * 13 12 2 16 16 C 1.40014 * 119.89504 * 359.72446 * 15 13 12 17 17 C 1.36310 * 120.10757 * 179.72052 * 16 15 13 18 18 C 1.40893 * 119.89194 * 0.53218 * 17 16 15 19 19 C 1.41107 * 120.10502 * 179.76325 * 18 17 16 20 20 H 1.07995 * 120.00249 * 204.62671 * 19 18 17 21 21 C 1.40227 * 119.99823 * 24.63061 * 19 18 17 22 22 N 1.30648 * 120.00415 * 17.88622 * 21 19 18 23 23 Si 1.86807 * 119.99833 * 197.88775 * 21 19 18 24 24 H 1.48504 * 109.46885 * 89.99552 * 23 21 19 25 25 H 1.48496 * 109.47290 * 209.99847 * 23 21 19 26 26 H 1.48499 * 109.47264 * 330.00080 * 23 21 19 27 27 C 1.40891 * 119.78993 * 359.74362 * 18 17 16 28 28 C 1.36310 * 119.89043 * 359.97438 * 27 18 17 29 29 H 1.09001 * 109.46816 * 299.99491 * 1 2 3 30 30 H 1.08997 * 109.47981 * 59.99450 * 1 2 3 31 31 H 1.09001 * 109.47321 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.46948 * 65.00103 * 4 2 1 33 33 H 1.09003 * 109.47198 * 184.99802 * 4 2 1 34 34 H 1.09001 * 111.12576 * 270.24244 * 8 6 5 35 35 H 1.09000 * 111.12645 * 34.40763 * 8 6 5 36 36 H 1.08997 * 110.31186 * 204.64414 * 9 8 6 37 37 H 1.09000 * 110.31387 * 82.46910 * 9 8 6 38 38 H 1.08996 * 109.83531 * 238.77599 * 11 10 9 39 39 H 1.09002 * 109.82876 * 117.80235 * 11 10 9 40 40 H 0.97000 * 120.00128 * 95.27368 * 12 2 1 41 41 H 1.08006 * 119.94255 * 0.02562 * 16 15 13 42 42 H 1.08003 * 120.05969 * 180.29529 * 17 16 15 43 43 H 0.96997 * 119.99929 * 180.02562 * 22 21 19 44 44 H 1.08003 * 120.05195 * 179.97438 * 27 18 17 45 45 H 1.08001 * 119.94428 * 179.97438 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7213 -1.2493 5 8 1.4701 -2.0303 -1.3095 6 6 1.8843 -2.7929 -2.4448 7 1 2.9022 -2.5323 -2.7346 8 6 1.7572 -4.3151 -2.1645 9 6 1.5313 -4.8602 -3.5971 10 8 0.7245 -3.8690 -4.2528 11 6 0.9092 -2.5946 -3.6252 12 7 2.0183 -0.6906 1.1961 13 6 2.1471 -0.0183 2.3570 14 8 1.8576 1.1612 2.4118 15 6 2.6398 -0.7142 3.5624 16 6 2.9671 -2.0741 3.4983 17 6 3.4278 -2.7194 4.6071 18 6 3.5637 -2.0186 5.8218 19 6 4.0355 -2.6835 6.9735 20 1 3.7801 -2.3112 7.9546 21 6 4.8359 -3.8276 6.8442 22 7 5.4326 -4.0827 5.7103 23 14 5.0489 -4.9871 8.2933 24 1 3.9895 -6.0271 8.2549 25 1 6.3825 -5.6358 8.2163 26 1 4.9439 -4.2202 9.5605 27 6 3.2276 -0.6518 5.8827 28 6 2.7732 -0.0136 4.7672 29 1 -0.3633 0.5138 0.8900 30 1 -0.3635 0.5139 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 1.7515 -0.1583 -2.1370 33 1 3.1262 -0.7995 -1.2057 34 1 2.6757 -4.7131 -1.7330 35 1 0.9008 -4.5265 -1.5242 36 1 1.0039 -5.8134 -3.5605 37 1 2.4846 -4.9739 -4.1134 38 1 -0.0465 -2.2219 -3.2568 39 1 1.3322 -1.8885 -4.3397 40 1 2.2528 -1.6308 1.1515 41 1 2.8591 -2.6113 2.5676 42 1 3.6846 -3.7672 4.5556 43 1 5.9860 -4.8743 5.6208 44 1 3.3298 -0.1106 6.8117 45 1 2.5149 1.0341 4.8130 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000270394084.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:07:25 Heat of formation + Delta-G solvation = -119.732272 kcal Electronic energy + Delta-G solvation = -26260.818635 eV Core-core repulsion = 22435.562361 eV Total energy + Delta-G solvation = -3825.256274 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.01263 -39.22856 -37.76613 -37.01231 -34.79753 -33.86944 -31.79902 -30.99926 -29.60774 -29.40552 -29.01015 -26.54686 -25.84608 -22.93197 -22.35273 -21.83133 -21.10695 -20.57569 -19.60909 -17.65067 -17.51817 -17.14741 -16.72002 -16.02209 -15.68711 -15.44255 -14.97670 -14.75585 -14.35109 -14.05449 -13.96668 -13.72320 -13.47420 -13.20211 -12.83387 -12.77086 -12.59241 -12.34734 -12.14597 -12.03272 -11.83138 -11.75697 -11.45528 -11.34393 -11.28064 -11.01256 -10.98034 -10.88458 -10.64428 -10.03799 -9.92850 -9.81058 -9.55760 -9.35692 -8.94929 -8.59904 -7.71809 -7.54244 -7.04008 -4.60535 2.23587 2.91297 2.95298 2.97609 3.03957 3.15469 3.63453 3.73522 3.79661 3.87930 4.10230 4.52335 4.56451 4.59321 4.73696 4.82730 4.94248 5.03453 5.15428 5.31040 5.36152 5.40528 5.48370 5.54446 5.57976 5.62497 5.71628 5.78684 5.98430 6.06695 6.21389 6.32165 6.43253 6.59907 6.77060 6.82621 6.86633 6.98175 7.08889 7.13853 7.43845 7.66251 7.79975 7.86263 8.07207 8.28069 8.40044 8.63080 8.75439 9.09593 9.88008 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.013120 B = 0.002903 C = 0.002429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2133.673614 B = 9642.687224 C =11523.757888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.150 3.850 3 H 0.096 0.904 4 C 0.051 3.949 5 O -0.362 6.362 6 C 0.056 3.944 7 H 0.079 0.921 8 C -0.154 4.154 9 C 0.051 3.949 10 O -0.381 6.381 11 C 0.028 3.972 12 N -0.734 5.734 13 C 0.572 3.428 14 O -0.577 6.577 15 C -0.284 4.284 16 C -0.062 4.062 17 C -0.178 4.178 18 C 0.129 3.871 19 C -0.443 4.443 20 H 0.085 0.915 21 C 0.075 3.925 22 N -0.772 5.772 23 Si 0.914 3.086 24 H -0.264 1.264 25 H -0.275 1.275 26 H -0.259 1.259 27 C -0.239 4.239 28 C -0.022 4.022 29 H 0.061 0.939 30 H 0.056 0.944 31 H 0.064 0.936 32 H 0.062 0.938 33 H 0.059 0.941 34 H 0.091 0.909 35 H 0.092 0.908 36 H 0.090 0.910 37 H 0.063 0.937 38 H 0.081 0.919 39 H 0.069 0.931 40 H 0.401 0.599 41 H 0.089 0.911 42 H 0.120 0.880 43 H 0.286 0.714 44 H 0.098 0.902 45 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.587 -2.616 -15.169 15.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.044 3.956 3 H 0.114 0.886 4 C -0.026 4.026 5 O -0.281 6.281 6 C -0.003 4.003 7 H 0.097 0.903 8 C -0.191 4.191 9 C -0.025 4.025 10 O -0.301 6.301 11 C -0.049 4.049 12 N -0.387 5.387 13 C 0.367 3.633 14 O -0.460 6.460 15 C -0.288 4.288 16 C -0.081 4.081 17 C -0.198 4.198 18 C 0.125 3.875 19 C -0.471 4.471 20 H 0.103 0.897 21 C -0.147 4.147 22 N -0.395 5.395 23 Si 0.737 3.263 24 H -0.189 1.189 25 H -0.200 1.200 26 H -0.183 1.183 27 C -0.259 4.259 28 C -0.041 4.041 29 H 0.080 0.920 30 H 0.075 0.925 31 H 0.083 0.917 32 H 0.080 0.920 33 H 0.077 0.923 34 H 0.110 0.890 35 H 0.111 0.889 36 H 0.108 0.892 37 H 0.081 0.919 38 H 0.099 0.901 39 H 0.087 0.913 40 H 0.237 0.763 41 H 0.107 0.893 42 H 0.138 0.862 43 H 0.097 0.903 44 H 0.116 0.884 45 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -3.875 -2.049 -15.295 15.911 hybrid contribution 0.710 -0.881 0.466 1.224 sum -3.165 -2.931 -14.829 15.444 Atomic orbital electron populations 1.22078 0.95112 1.02606 1.01841 1.20842 0.94867 0.96565 0.83285 0.88618 1.22981 0.97620 0.83793 0.98178 1.87991 1.69871 1.26474 1.43786 1.23662 0.97539 0.92335 0.86736 0.90331 1.23324 1.04668 0.93135 0.97995 1.23358 0.95500 0.92704 0.90949 1.88427 1.67061 1.17765 1.56829 1.23671 1.00514 0.86296 0.94397 1.45925 1.69257 1.14320 1.09207 1.18597 0.75777 0.85957 0.82941 1.90621 1.53304 1.16532 1.85516 1.18906 1.21251 0.95151 0.93517 1.20481 0.97457 0.93039 0.97107 1.20972 1.05505 1.00177 0.93109 1.17789 0.86372 0.90445 0.92855 1.19854 1.25228 1.07407 0.94605 0.89716 1.26095 0.93463 0.97710 0.97387 1.69746 1.19688 1.24124 1.25981 0.86211 0.78482 0.80094 0.81497 1.18928 1.20035 1.18287 1.20720 1.12707 0.94908 0.97568 1.20359 0.94245 0.97773 0.91765 0.92007 0.92508 0.91721 0.91976 0.92288 0.88994 0.88930 0.89188 0.91908 0.90080 0.91310 0.76345 0.89324 0.86231 0.90275 0.88408 0.88133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.08 9.29 37.16 0.35 -1.74 16 2 C 0.15 2.05 2.98 -67.93 -0.20 1.84 16 3 H 0.10 1.39 7.58 -51.93 -0.39 1.00 16 4 C 0.05 0.53 5.55 37.16 0.21 0.74 16 5 O -0.36 -3.99 8.93 -35.23 -0.31 -4.30 16 6 C 0.06 0.50 3.45 -24.79 -0.09 0.42 16 7 H 0.08 0.61 7.89 -51.93 -0.41 0.20 16 8 C -0.15 -1.29 6.89 -24.49 -0.17 -1.46 16 9 C 0.05 0.41 7.78 38.18 0.30 0.70 16 10 O -0.38 -4.03 11.36 -35.23 -0.40 -4.43 16 11 C 0.03 0.26 7.58 37.88 0.29 0.55 16 12 N -0.73 -12.27 5.01 -54.82 -0.27 -12.54 16 13 C 0.57 12.09 7.73 -12.42 -0.10 11.99 16 14 O -0.58 -13.53 15.98 5.29 0.08 -13.44 16 15 C -0.28 -6.49 5.89 -104.73 -0.62 -7.10 16 16 C -0.06 -1.37 9.47 -39.61 -0.38 -1.74 16 17 C -0.18 -4.36 8.64 -39.27 -0.34 -4.70 16 18 C 0.13 3.27 5.58 -106.80 -0.60 2.68 16 19 C -0.44 -11.01 9.04 -37.75 -0.34 -11.35 16 20 H 0.08 2.01 7.91 -52.49 -0.42 1.60 16 21 C 0.07 1.73 5.14 -17.31 -0.09 1.64 16 22 N -0.77 -18.38 10.95 55.56 0.61 -17.77 16 23 Si 0.91 17.21 29.60 -169.99 -5.03 12.17 16 24 H -0.26 -4.93 7.11 56.52 0.40 -4.53 16 25 H -0.28 -5.07 7.11 56.52 0.40 -4.67 16 26 H -0.26 -4.85 7.11 56.52 0.40 -4.45 16 27 C -0.24 -5.81 9.73 -39.27 -0.38 -6.19 16 28 C -0.02 -0.53 9.52 -39.61 -0.38 -0.90 16 29 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.06 0.87 7.56 -51.93 -0.39 0.47 16 32 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 33 H 0.06 0.59 8.11 -51.93 -0.42 0.17 16 34 H 0.09 0.69 8.14 -51.93 -0.42 0.26 16 35 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.08 0.78 8.05 -51.93 -0.42 0.36 16 39 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.40 6.32 6.38 -40.82 -0.26 6.06 16 41 H 0.09 1.69 6.37 -52.48 -0.33 1.36 16 42 H 0.12 2.96 6.15 -52.48 -0.32 2.64 16 43 H 0.29 6.11 8.29 -40.82 -0.34 5.78 16 44 H 0.10 2.21 8.06 -52.48 -0.42 1.79 16 45 H 0.10 2.30 7.63 -52.49 -0.40 1.90 16 LS Contribution 372.52 15.07 5.61 5.61 Total: -1.00 -28.89 372.52 -8.95 -37.85 By element: Atomic # 1 Polarization: 18.19 SS G_CDS: -6.71 Total: 11.49 kcal Atomic # 6 Polarization: -12.10 SS G_CDS: -2.53 Total: -14.63 kcal Atomic # 7 Polarization: -30.65 SS G_CDS: 0.33 Total: -30.31 kcal Atomic # 8 Polarization: -21.55 SS G_CDS: -0.63 Total: -22.18 kcal Atomic # 14 Polarization: 17.21 SS G_CDS: -5.03 Total: 12.17 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -28.89 -8.95 -37.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270394084.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.887 kcal (2) G-P(sol) polarization free energy of solvation -28.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds