Wall clock time and date at job start Tue Mar 31 2020 13:07:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 109.47321 * 2 1 4 4 C 1.53004 * 109.46745 * 240.00067 * 2 1 3 5 5 O 1.42898 * 109.47133 * 304.99991 * 4 2 1 6 6 C 1.42904 * 114.00019 * 180.02562 * 5 4 2 7 7 H 1.09003 * 110.75022 * 32.01753 * 6 5 4 8 8 C 1.55301 * 110.84950 * 155.71211 * 6 5 4 9 9 C 1.54943 * 100.94176 * 152.32380 * 8 6 5 10 10 O 1.43648 * 105.13958 * 323.55561 * 9 8 6 11 11 C 1.43244 * 109.96866 * 24.42546 * 10 9 8 12 12 N 1.46494 * 109.47217 * 120.00215 * 2 1 3 13 13 C 1.34772 * 119.99995 * 274.99626 * 12 2 1 14 14 O 1.21581 * 120.00154 * 0.02562 * 13 12 2 15 15 C 1.47648 * 120.00098 * 180.02562 * 13 12 2 16 16 C 1.40014 * 119.89504 * 359.72446 * 15 13 12 17 17 C 1.36310 * 120.10757 * 179.72052 * 16 15 13 18 18 C 1.40893 * 119.89194 * 0.53218 * 17 16 15 19 19 C 1.41107 * 120.10502 * 179.76325 * 18 17 16 20 20 H 1.07995 * 120.00249 * 204.62671 * 19 18 17 21 21 C 1.40227 * 119.99823 * 24.63061 * 19 18 17 22 22 N 1.30648 * 120.00415 * 17.88622 * 21 19 18 23 23 Si 1.86807 * 119.99833 * 197.88775 * 21 19 18 24 24 H 1.48504 * 109.46885 * 89.99552 * 23 21 19 25 25 H 1.48496 * 109.47290 * 209.99847 * 23 21 19 26 26 H 1.48499 * 109.47264 * 330.00080 * 23 21 19 27 27 C 1.40891 * 119.78993 * 359.74362 * 18 17 16 28 28 C 1.36310 * 119.89043 * 359.97438 * 27 18 17 29 29 H 1.09001 * 109.46816 * 299.99491 * 1 2 3 30 30 H 1.08997 * 109.47981 * 59.99450 * 1 2 3 31 31 H 1.09001 * 109.47321 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.46948 * 65.00103 * 4 2 1 33 33 H 1.09003 * 109.47198 * 184.99802 * 4 2 1 34 34 H 1.09001 * 111.12576 * 270.24244 * 8 6 5 35 35 H 1.09000 * 111.12645 * 34.40763 * 8 6 5 36 36 H 1.08997 * 110.31186 * 204.64414 * 9 8 6 37 37 H 1.09000 * 110.31387 * 82.46910 * 9 8 6 38 38 H 1.08996 * 109.83531 * 238.77599 * 11 10 9 39 39 H 1.09002 * 109.82876 * 117.80235 * 11 10 9 40 40 H 0.97000 * 120.00128 * 95.27368 * 12 2 1 41 41 H 1.08006 * 119.94255 * 0.02562 * 16 15 13 42 42 H 1.08003 * 120.05969 * 180.29529 * 17 16 15 43 43 H 0.96997 * 119.99929 * 180.02562 * 22 21 19 44 44 H 1.08003 * 120.05195 * 179.97438 * 27 18 17 45 45 H 1.08001 * 119.94428 * 179.97438 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7213 -1.2493 5 8 1.4701 -2.0303 -1.3095 6 6 1.8843 -2.7929 -2.4448 7 1 2.9022 -2.5323 -2.7346 8 6 1.7572 -4.3151 -2.1645 9 6 1.5313 -4.8602 -3.5971 10 8 0.7245 -3.8690 -4.2528 11 6 0.9092 -2.5946 -3.6252 12 7 2.0183 -0.6906 1.1961 13 6 2.1471 -0.0183 2.3570 14 8 1.8576 1.1612 2.4118 15 6 2.6398 -0.7142 3.5624 16 6 2.9671 -2.0741 3.4983 17 6 3.4278 -2.7194 4.6071 18 6 3.5637 -2.0186 5.8218 19 6 4.0355 -2.6835 6.9735 20 1 3.7801 -2.3112 7.9546 21 6 4.8359 -3.8276 6.8442 22 7 5.4326 -4.0827 5.7103 23 14 5.0489 -4.9871 8.2933 24 1 3.9895 -6.0271 8.2549 25 1 6.3825 -5.6358 8.2163 26 1 4.9439 -4.2202 9.5605 27 6 3.2276 -0.6518 5.8827 28 6 2.7732 -0.0136 4.7672 29 1 -0.3633 0.5138 0.8900 30 1 -0.3635 0.5139 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 1.7515 -0.1583 -2.1370 33 1 3.1262 -0.7995 -1.2057 34 1 2.6757 -4.7131 -1.7330 35 1 0.9008 -4.5265 -1.5242 36 1 1.0039 -5.8134 -3.5605 37 1 2.4846 -4.9739 -4.1134 38 1 -0.0465 -2.2219 -3.2568 39 1 1.3322 -1.8885 -4.3397 40 1 2.2528 -1.6308 1.1515 41 1 2.8591 -2.6113 2.5676 42 1 3.6846 -3.7672 4.5556 43 1 5.9860 -4.8743 5.6208 44 1 3.3298 -0.1106 6.8117 45 1 2.5149 1.0341 4.8130 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000270394084.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:07:23 Heat of formation + Delta-G solvation = -137.020120 kcal Electronic energy + Delta-G solvation = -26261.568292 eV Core-core repulsion = 22435.562361 eV Total energy + Delta-G solvation = -3826.005931 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -40.99728 -40.52857 -39.10289 -38.37482 -36.07732 -35.66178 -32.95599 -32.14290 -31.32183 -31.04626 -29.71123 -27.71102 -27.38455 -24.11893 -23.46324 -22.85087 -22.51417 -21.96870 -21.16666 -19.36125 -18.55458 -18.41142 -17.61511 -17.32656 -16.97816 -16.48941 -15.97555 -15.80480 -15.75166 -15.51553 -15.36747 -15.03984 -14.84771 -14.45422 -14.19602 -13.91624 -13.87951 -13.65398 -13.35540 -13.29050 -13.19887 -12.89471 -12.81439 -12.62764 -12.44467 -12.37205 -12.31430 -11.96236 -11.76012 -11.67756 -11.36162 -11.12142 -10.72083 -10.60508 -10.49663 -10.05185 -9.56995 -9.40069 -8.79059 -6.47927 0.45306 1.15392 1.39156 1.43894 1.53366 2.13214 2.18081 2.33260 2.49330 2.79749 2.99668 3.44264 3.69685 3.76012 3.88409 3.99526 4.08163 4.18098 4.26695 4.30330 4.34063 4.39535 4.45313 4.47500 4.59641 4.70622 4.75115 4.80722 4.82914 4.92659 4.94993 5.00066 5.04302 5.06396 5.16850 5.30627 5.33512 5.58438 5.65723 5.83240 5.95188 5.95534 6.00058 6.15390 6.23176 6.54470 6.74194 6.77706 6.89571 7.47252 8.16219 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.013120 B = 0.002903 C = 0.002429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2133.673614 B = 9642.687224 C =11523.757888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.143 3.857 3 H 0.089 0.911 4 C 0.059 3.941 5 O -0.379 6.379 6 C 0.055 3.945 7 H 0.096 0.904 8 C -0.154 4.154 9 C 0.049 3.951 10 O -0.405 6.405 11 C 0.028 3.972 12 N -0.718 5.718 13 C 0.572 3.428 14 O -0.605 6.605 15 C -0.294 4.294 16 C -0.053 4.053 17 C -0.197 4.197 18 C 0.102 3.898 19 C -0.474 4.474 20 H 0.084 0.916 21 C 0.039 3.961 22 N -0.797 5.797 23 Si 0.987 3.013 24 H -0.259 1.259 25 H -0.264 1.264 26 H -0.258 1.258 27 C -0.254 4.254 28 C -0.033 4.033 29 H 0.033 0.967 30 H 0.084 0.916 31 H 0.061 0.939 32 H 0.091 0.909 33 H 0.066 0.934 34 H 0.102 0.898 35 H 0.079 0.921 36 H 0.098 0.902 37 H 0.078 0.922 38 H 0.072 0.928 39 H 0.084 0.916 40 H 0.407 0.593 41 H 0.120 0.880 42 H 0.114 0.886 43 H 0.297 0.703 44 H 0.104 0.896 45 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.127 -3.800 -16.562 17.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.039 3.961 3 H 0.106 0.894 4 C -0.018 4.018 5 O -0.298 6.298 6 C -0.004 4.004 7 H 0.114 0.886 8 C -0.192 4.192 9 C -0.026 4.026 10 O -0.325 6.325 11 C -0.049 4.049 12 N -0.370 5.370 13 C 0.366 3.634 14 O -0.489 6.489 15 C -0.298 4.298 16 C -0.072 4.072 17 C -0.217 4.217 18 C 0.098 3.902 19 C -0.502 4.502 20 H 0.102 0.898 21 C -0.181 4.181 22 N -0.421 5.421 23 Si 0.807 3.193 24 H -0.183 1.183 25 H -0.189 1.189 26 H -0.182 1.182 27 C -0.274 4.274 28 C -0.052 4.052 29 H 0.052 0.948 30 H 0.103 0.897 31 H 0.081 0.919 32 H 0.109 0.891 33 H 0.085 0.915 34 H 0.120 0.880 35 H 0.097 0.903 36 H 0.116 0.884 37 H 0.096 0.904 38 H 0.091 0.909 39 H 0.102 0.898 40 H 0.244 0.756 41 H 0.138 0.862 42 H 0.132 0.868 43 H 0.108 0.892 44 H 0.122 0.878 45 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -3.420 -3.243 -16.733 17.384 hybrid contribution 0.540 -0.486 0.792 1.075 sum -2.880 -3.730 -15.941 16.623 Atomic orbital electron populations 1.22003 0.94656 1.02399 1.01845 1.21092 0.95214 0.96528 0.83295 0.89353 1.22903 0.97842 0.83853 0.97191 1.87964 1.70270 1.26744 1.44827 1.23788 0.98306 0.92225 0.86041 0.88626 1.23332 1.04590 0.93077 0.98152 1.23501 0.96079 0.92494 0.90558 1.88398 1.67899 1.18668 1.57520 1.23708 1.00273 0.86138 0.94771 1.45828 1.67758 1.14461 1.08951 1.18377 0.75771 0.85577 0.83681 1.90603 1.54617 1.17612 1.86088 1.19214 1.20815 0.95594 0.94185 1.20702 0.95873 0.92829 0.97747 1.21003 1.06908 1.00044 0.93717 1.18133 0.87164 0.91057 0.93797 1.20111 1.26514 1.09043 0.94482 0.89752 1.26913 0.92428 0.98477 1.00243 1.69760 1.19737 1.24866 1.27705 0.85112 0.78847 0.77647 0.77667 1.18348 1.18858 1.18207 1.20863 1.13396 0.94955 0.98173 1.20508 0.94431 0.98044 0.92239 0.94802 0.89702 0.91949 0.89103 0.91533 0.87983 0.90271 0.88400 0.90366 0.90938 0.89794 0.75625 0.86194 0.86847 0.89180 0.87835 0.87923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.76 9.29 71.98 0.67 -3.09 16 2 C 0.14 3.66 2.98 44.99 0.13 3.79 16 3 H 0.09 2.45 7.58 -2.39 -0.02 2.43 16 4 C 0.06 1.05 5.55 71.98 0.40 1.45 16 5 O -0.38 -7.38 8.93 -148.98 -1.33 -8.71 16 6 C 0.05 0.84 3.45 31.85 0.11 0.95 16 7 H 0.10 1.16 7.89 -2.39 -0.02 1.14 16 8 C -0.15 -2.30 6.89 32.05 0.22 -2.07 16 9 C 0.05 0.69 7.78 72.65 0.56 1.25 16 10 O -0.40 -7.86 11.36 -148.98 -1.69 -9.55 16 11 C 0.03 0.45 7.58 72.45 0.55 1.00 16 12 N -0.72 -23.10 5.01 -445.61 -2.23 -25.33 16 13 C 0.57 24.01 7.73 86.73 0.67 24.68 16 14 O -0.60 -28.45 15.98 -3.97 -0.06 -28.51 16 15 C -0.29 -13.48 5.89 -19.93 -0.12 -13.60 16 16 C -0.05 -2.32 9.47 22.25 0.21 -2.11 16 17 C -0.20 -9.78 8.64 22.47 0.19 -9.58 16 18 C 0.10 5.30 5.58 -21.28 -0.12 5.18 16 19 C -0.47 -24.00 9.04 23.46 0.21 -23.78 16 20 H 0.08 4.11 7.91 -2.91 -0.02 4.09 16 21 C 0.04 1.78 5.14 85.35 0.44 2.22 16 22 N -0.80 -37.83 10.95 21.87 0.24 -37.59 16 23 Si 0.99 34.66 29.60 68.60 2.03 36.69 16 24 H -0.26 -8.82 7.11 99.48 0.71 -8.12 16 25 H -0.26 -8.74 7.11 99.48 0.71 -8.03 16 26 H -0.26 -8.96 7.11 99.48 0.71 -8.25 16 27 C -0.25 -12.72 9.73 22.47 0.22 -12.50 16 28 C -0.03 -1.60 9.52 22.25 0.21 -1.39 16 29 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 31 H 0.06 1.58 7.56 -2.39 -0.02 1.56 16 32 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.07 1.12 8.11 -2.39 -0.02 1.10 16 34 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 35 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 36 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 37 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 38 H 0.07 1.26 8.05 -2.39 -0.02 1.25 16 39 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 40 H 0.41 12.08 6.38 -92.71 -0.59 11.48 16 41 H 0.12 4.40 6.37 -2.91 -0.02 4.38 16 42 H 0.11 5.68 6.15 -2.91 -0.02 5.66 16 43 H 0.30 12.47 8.29 -92.71 -0.77 11.71 16 44 H 0.10 4.87 8.06 -2.91 -0.02 4.84 16 45 H 0.10 4.82 7.63 -2.91 -0.02 4.80 16 Total: -1.00 -63.07 372.52 1.92 -61.14 By element: Atomic # 1 Polarization: 39.06 SS G_CDS: 0.41 Total: 39.47 kcal Atomic # 6 Polarization: -32.17 SS G_CDS: 4.57 Total: -27.60 kcal Atomic # 7 Polarization: -60.93 SS G_CDS: -1.99 Total: -62.93 kcal Atomic # 8 Polarization: -43.69 SS G_CDS: -3.09 Total: -46.77 kcal Atomic # 14 Polarization: 34.66 SS G_CDS: 2.03 Total: 36.69 kcal Total: -63.07 1.92 -61.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270394084.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.877 kcal (2) G-P(sol) polarization free energy of solvation -63.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds