Wall clock time and date at job start Tue Mar 31 2020 13:07:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.46782 * 2 1 4 4 C 1.52998 * 109.47004 * 240.00233 * 2 1 3 5 5 O 1.42901 * 109.47223 * 304.99487 * 4 2 1 6 6 C 1.42898 * 113.99876 * 179.97438 * 5 4 2 7 7 H 1.08994 * 110.75493 * 327.98178 * 6 5 4 8 8 C 1.55567 * 110.83589 * 204.30752 * 6 5 4 9 9 C 1.54950 * 100.82823 * 207.68596 * 8 6 5 10 10 O 1.43648 * 105.22013 * 36.44285 * 9 8 6 11 11 C 1.43240 * 109.96935 * 335.52348 * 10 9 8 12 12 N 1.46495 * 109.47547 * 120.00095 * 2 1 3 13 13 C 1.34783 * 120.00188 * 274.99899 * 12 2 1 14 14 O 1.21590 * 119.99440 * 0.02562 * 13 12 2 15 15 C 1.47640 * 120.00114 * 179.97438 * 13 12 2 16 16 C 1.40013 * 119.89601 * 359.73507 * 15 13 12 17 17 C 1.36318 * 120.10642 * 179.71726 * 16 15 13 18 18 C 1.40889 * 119.89127 * 0.54674 * 17 16 15 19 19 C 1.41099 * 120.10344 * 179.74608 * 18 17 16 20 20 H 1.08007 * 119.99840 * 204.61806 * 19 18 17 21 21 C 1.40225 * 120.00452 * 24.61674 * 19 18 17 22 22 N 1.30652 * 119.99700 * 17.90010 * 21 19 18 23 23 Si 1.86791 * 120.00272 * 197.89576 * 21 19 18 24 24 H 1.48502 * 109.47473 * 0.02562 * 23 21 19 25 25 H 1.48508 * 109.47026 * 120.00258 * 23 21 19 26 26 H 1.48495 * 109.47491 * 239.99911 * 23 21 19 27 27 C 1.40892 * 119.79000 * 359.72608 * 18 17 16 28 28 C 1.36311 * 119.89651 * 359.97438 * 27 18 17 29 29 H 1.08995 * 109.46751 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46807 * 299.99364 * 1 2 3 31 31 H 1.08994 * 109.47257 * 60.00140 * 1 2 3 32 32 H 1.09007 * 109.47141 * 184.99394 * 4 2 1 33 33 H 1.09000 * 109.47427 * 65.00002 * 4 2 1 34 34 H 1.09010 * 111.22592 * 89.79039 * 8 6 5 35 35 H 1.09005 * 111.13477 * 325.54880 * 8 6 5 36 36 H 1.08997 * 110.30985 * 277.47964 * 9 8 6 37 37 H 1.08994 * 110.30865 * 155.40616 * 9 8 6 38 38 H 1.09002 * 109.83290 * 121.22568 * 11 10 9 39 39 H 1.09007 * 109.83033 * 242.10367 * 11 10 9 40 40 H 0.97003 * 120.00459 * 94.99820 * 12 2 1 41 41 H 1.08000 * 119.94320 * 359.97438 * 16 15 13 42 42 H 1.07996 * 120.05454 * 180.28103 * 17 16 15 43 43 H 0.96988 * 120.00095 * 179.97438 * 22 21 19 44 44 H 1.08004 * 120.05306 * 180.02562 * 27 18 17 45 45 H 1.08006 * 119.95287 * 179.97438 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 8 1.4703 -2.0303 -1.3095 6 6 1.8836 -2.7924 -2.4454 7 1 2.0663 -2.1423 -3.3009 8 6 0.8324 -3.8861 -2.7903 9 6 1.7328 -4.9541 -3.4609 10 8 2.9699 -4.9160 -2.7318 11 6 3.1361 -3.6331 -2.1168 12 7 2.0184 -0.6906 1.1961 13 6 2.1472 -0.0182 2.3571 14 8 1.8576 1.1614 2.4118 15 6 2.6389 -0.7144 3.5627 16 6 2.9655 -2.0744 3.4988 17 6 3.4254 -2.7200 4.6078 18 6 3.5608 -2.0193 5.8226 19 6 4.0313 -2.6845 6.9746 20 1 3.7755 -2.3119 7.9556 21 6 4.8309 -3.8292 6.8460 22 7 5.4283 -4.0847 5.7125 23 14 5.0419 -4.9888 8.2951 24 1 4.2668 -4.4785 9.4545 25 1 4.5466 -6.3390 7.9248 26 1 6.4795 -5.0713 8.6579 27 6 3.2255 -0.6522 5.8833 28 6 2.7723 -0.0137 4.7675 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5137 0.8901 31 1 -0.3633 0.5138 -0.8899 32 1 3.1264 -0.7993 -1.2057 33 1 1.7516 -0.1583 -2.1370 34 1 0.0846 -3.5087 -3.4879 35 1 0.3629 -4.2783 -1.8882 36 1 1.9027 -4.7024 -4.5077 37 1 1.2755 -5.9400 -3.3788 38 1 3.2301 -3.7499 -1.0371 39 1 4.0257 -3.1447 -2.5146 40 1 2.2491 -1.6318 1.1526 41 1 2.8569 -2.6118 2.5683 42 1 3.6813 -3.7679 4.5565 43 1 5.9817 -4.8762 5.6236 44 1 3.3281 -0.1109 6.8122 45 1 2.5145 1.0342 4.8131 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000270394087.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:07:28 Heat of formation + Delta-G solvation = -119.208056 kcal Electronic energy + Delta-G solvation = -26403.372199 eV Core-core repulsion = 22578.138657 eV Total energy + Delta-G solvation = -3825.233542 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -39.97986 -39.20705 -37.74860 -36.99507 -34.78729 -33.85091 -31.77118 -31.00580 -29.61126 -29.39019 -28.92140 -26.56643 -25.82671 -22.85621 -22.39091 -21.82617 -21.09399 -20.57374 -19.57725 -17.61966 -17.50034 -17.11709 -16.68939 -16.12534 -15.49275 -15.37688 -15.22607 -14.62063 -14.27708 -14.03189 -13.92483 -13.68425 -13.46111 -13.18539 -13.03500 -12.76901 -12.50555 -12.27230 -12.08750 -11.95072 -11.83500 -11.76516 -11.52000 -11.34278 -11.25037 -11.01124 -10.97025 -10.87818 -10.62612 -10.02041 -9.89132 -9.76043 -9.54486 -9.33186 -8.93895 -8.59211 -7.69880 -7.52328 -7.02060 -4.58495 2.25089 2.91724 2.96557 3.02007 3.05925 3.16502 3.67935 3.75469 3.80006 3.89325 4.10536 4.54344 4.57092 4.58874 4.73820 4.82103 4.96976 5.03583 5.14019 5.34721 5.38986 5.40395 5.47540 5.57043 5.62514 5.63854 5.69960 5.78521 5.98694 6.08850 6.22003 6.33746 6.42735 6.66628 6.78916 6.84461 6.87100 6.99477 7.10243 7.15764 7.45761 7.68040 7.82004 7.88276 8.09078 8.28999 8.42105 8.65037 8.77413 9.10612 9.89988 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.011548 B = 0.003214 C = 0.002595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2424.093679 B = 8710.184819 C =10788.483808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.150 3.850 3 H 0.096 0.904 4 C 0.051 3.949 5 O -0.363 6.363 6 C 0.057 3.943 7 H 0.077 0.923 8 C -0.152 4.152 9 C 0.051 3.949 10 O -0.379 6.379 11 C 0.026 3.974 12 N -0.734 5.734 13 C 0.573 3.427 14 O -0.578 6.578 15 C -0.284 4.284 16 C -0.061 4.061 17 C -0.178 4.178 18 C 0.129 3.871 19 C -0.443 4.443 20 H 0.085 0.915 21 C 0.074 3.926 22 N -0.771 5.771 23 Si 0.913 3.087 24 H -0.257 1.257 25 H -0.269 1.269 26 H -0.272 1.272 27 C -0.240 4.240 28 C -0.022 4.022 29 H 0.064 0.936 30 H 0.061 0.939 31 H 0.055 0.945 32 H 0.058 0.942 33 H 0.063 0.937 34 H 0.088 0.912 35 H 0.092 0.908 36 H 0.061 0.939 37 H 0.089 0.911 38 H 0.085 0.915 39 H 0.070 0.930 40 H 0.401 0.599 41 H 0.089 0.911 42 H 0.120 0.880 43 H 0.286 0.714 44 H 0.098 0.902 45 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.329 -1.802 -16.331 17.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.044 3.956 3 H 0.114 0.886 4 C -0.026 4.026 5 O -0.282 6.282 6 C -0.002 4.002 7 H 0.095 0.905 8 C -0.190 4.190 9 C -0.026 4.026 10 O -0.298 6.298 11 C -0.051 4.051 12 N -0.387 5.387 13 C 0.368 3.632 14 O -0.460 6.460 15 C -0.289 4.289 16 C -0.081 4.081 17 C -0.197 4.197 18 C 0.125 3.875 19 C -0.470 4.470 20 H 0.103 0.897 21 C -0.147 4.147 22 N -0.394 5.394 23 Si 0.736 3.264 24 H -0.181 1.181 25 H -0.194 1.194 26 H -0.197 1.197 27 C -0.259 4.259 28 C -0.041 4.041 29 H 0.083 0.917 30 H 0.080 0.920 31 H 0.074 0.926 32 H 0.076 0.924 33 H 0.081 0.919 34 H 0.106 0.894 35 H 0.111 0.889 36 H 0.079 0.921 37 H 0.107 0.893 38 H 0.103 0.897 39 H 0.088 0.912 40 H 0.237 0.763 41 H 0.107 0.893 42 H 0.138 0.862 43 H 0.097 0.903 44 H 0.116 0.884 45 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -5.339 -1.367 -16.266 17.174 hybrid contribution 0.410 -0.744 0.240 0.883 sum -4.928 -2.111 -16.026 16.899 Atomic orbital electron populations 1.22074 0.95149 1.02577 1.01799 1.20840 0.94838 0.96577 0.83306 0.88611 1.22983 0.97747 0.83622 0.98220 1.87989 1.69408 1.26492 1.44271 1.23702 0.93984 0.93280 0.89229 0.90465 1.23354 0.98013 0.95178 1.02414 1.23337 0.84100 0.99800 0.95323 1.88456 1.39724 1.32869 1.68744 1.23710 0.97685 0.84031 0.99689 1.45932 1.69347 1.14239 1.09212 1.18600 0.75755 0.85954 0.82929 1.90622 1.53329 1.16542 1.85523 1.18901 1.21348 0.95142 0.93502 1.20484 0.97436 0.93031 0.97119 1.20975 1.05480 1.00193 0.93095 1.17788 0.86379 0.90443 0.92851 1.19875 1.25218 1.07338 0.94599 0.89702 1.26099 0.93491 0.97727 0.97376 1.69750 1.19596 1.24145 1.25947 0.86179 0.79008 0.79796 0.81414 1.18070 1.19376 1.19681 1.20716 1.12760 0.94900 0.97556 1.20357 0.94258 0.97748 0.91763 0.91735 0.92016 0.92553 0.92360 0.91906 0.89354 0.88936 0.92070 0.89253 0.89719 0.91155 0.76349 0.89326 0.86221 0.90286 0.88422 0.88149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.06 9.29 37.16 0.35 -1.72 16 2 C 0.15 2.05 2.98 -67.93 -0.20 1.85 16 3 H 0.10 1.39 7.58 -51.93 -0.39 1.00 16 4 C 0.05 0.54 5.55 37.16 0.21 0.74 16 5 O -0.36 -4.00 8.93 -35.23 -0.31 -4.31 16 6 C 0.06 0.51 3.46 -24.64 -0.09 0.43 16 7 H 0.08 0.56 7.89 -51.93 -0.41 0.15 16 8 C -0.15 -1.21 6.91 -24.34 -0.17 -1.37 16 9 C 0.05 0.41 7.77 38.19 0.30 0.71 16 10 O -0.38 -4.40 11.36 -35.23 -0.40 -4.80 16 11 C 0.03 0.27 7.58 37.88 0.29 0.56 16 12 N -0.73 -12.36 5.01 -54.81 -0.27 -12.63 16 13 C 0.57 12.16 7.73 -12.42 -0.10 12.06 16 14 O -0.58 -13.57 15.99 5.29 0.08 -13.49 16 15 C -0.28 -6.56 5.89 -104.73 -0.62 -7.17 16 16 C -0.06 -1.38 9.47 -39.61 -0.38 -1.76 16 17 C -0.18 -4.41 8.64 -39.27 -0.34 -4.75 16 18 C 0.13 3.30 5.58 -106.80 -0.60 2.71 16 19 C -0.44 -11.09 9.04 -37.75 -0.34 -11.43 16 20 H 0.08 2.04 7.91 -52.48 -0.42 1.62 16 21 C 0.07 1.74 5.13 -17.31 -0.09 1.65 16 22 N -0.77 -18.61 10.95 55.56 0.61 -18.01 16 23 Si 0.91 17.40 29.60 -169.99 -5.03 12.37 16 24 H -0.26 -4.88 7.11 56.52 0.40 -4.48 16 25 H -0.27 -5.04 7.11 56.52 0.40 -4.64 16 26 H -0.27 -5.10 7.11 56.52 0.40 -4.70 16 27 C -0.24 -5.86 9.73 -39.27 -0.38 -6.24 16 28 C -0.02 -0.52 9.52 -39.61 -0.38 -0.90 16 29 H 0.06 0.85 7.56 -51.93 -0.39 0.46 16 30 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 31 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.06 0.51 8.11 -51.93 -0.42 0.09 16 34 H 0.09 0.54 8.14 -51.92 -0.42 0.12 16 35 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.08 0.99 8.05 -51.93 -0.42 0.57 16 39 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 40 H 0.40 6.41 6.38 -40.82 -0.26 6.15 16 41 H 0.09 1.73 6.37 -52.49 -0.33 1.39 16 42 H 0.12 3.01 6.15 -52.49 -0.32 2.69 16 43 H 0.29 6.20 8.29 -40.82 -0.34 5.86 16 44 H 0.10 2.22 8.06 -52.48 -0.42 1.80 16 45 H 0.10 2.31 7.63 -52.48 -0.40 1.91 16 LS Contribution 372.54 15.07 5.61 5.61 Total: -1.00 -29.27 372.54 -8.95 -38.22 By element: Atomic # 1 Polarization: 18.39 SS G_CDS: -6.71 Total: 11.69 kcal Atomic # 6 Polarization: -12.12 SS G_CDS: -2.53 Total: -14.65 kcal Atomic # 7 Polarization: -30.97 SS G_CDS: 0.33 Total: -30.64 kcal Atomic # 8 Polarization: -21.97 SS G_CDS: -0.63 Total: -22.60 kcal Atomic # 14 Polarization: 17.40 SS G_CDS: -5.03 Total: 12.37 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -29.27 -8.95 -38.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270394087.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.987 kcal (2) G-P(sol) polarization free energy of solvation -29.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds