Wall clock time and date at job start Tue Mar 31 2020 12:44:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.47103 * 2 1 4 4 N 1.46505 * 109.46999 * 240.00181 * 2 1 3 5 5 C 1.34775 * 119.99674 * 84.99983 * 4 2 1 6 6 O 1.21592 * 120.00317 * 359.97438 * 5 4 2 7 7 C 1.47541 * 119.99923 * 179.97438 * 5 4 2 8 8 C 1.39664 * 120.19438 * 0.02562 * 7 5 4 9 9 C 1.37834 * 119.91585 * 179.97438 * 8 7 5 10 10 C 1.38568 * 120.32300 * 0.02562 * 9 8 7 11 11 C 1.38026 * 120.40330 * 0.02562 * 10 9 8 12 12 C 1.38836 * 120.07353 * 359.68513 * 11 10 9 13 13 O 1.35515 * 120.16484 * 180.29341 * 12 11 10 14 14 C 1.34820 * 116.99994 * 354.40097 * 13 12 11 15 15 H 1.07997 * 119.99893 * 5.06320 * 14 13 12 16 16 C 1.38690 * 120.00162 * 185.06180 * 14 13 12 17 17 N 1.31530 * 120.00084 * 359.97438 * 16 14 13 18 18 Si 1.86804 * 120.00351 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.47037 * 89.99669 * 18 16 14 20 20 H 1.48496 * 109.47001 * 210.00108 * 18 16 14 21 21 H 1.48504 * 109.46777 * 330.00260 * 18 16 14 22 22 C 1.52999 * 109.47183 * 120.00612 * 2 1 3 23 23 H 1.08996 * 109.48817 * 300.02593 * 22 2 1 24 24 C 1.53093 * 109.48025 * 179.97438 * 22 2 1 25 25 C 1.53179 * 109.21321 * 182.43744 * 24 22 2 26 26 C 1.53172 * 109.03695 * 56.94987 * 25 24 22 27 27 C 1.53090 * 109.16425 * 303.01610 * 26 25 24 28 28 O 1.42907 * 109.53833 * 60.02598 * 22 2 1 29 29 H 1.09007 * 109.46841 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47365 * 299.99381 * 1 2 3 31 31 H 1.09000 * 109.47300 * 59.99489 * 1 2 3 32 32 H 0.96996 * 120.00330 * 264.99937 * 4 2 1 33 33 H 1.07989 * 120.04072 * 0.02562 * 8 7 5 34 34 H 1.07995 * 119.83431 * 180.02562 * 9 8 7 35 35 H 1.08004 * 119.79766 * 179.97438 * 10 9 8 36 36 H 1.08009 * 119.96235 * 179.97438 * 11 10 9 37 37 H 0.96994 * 120.00110 * 179.97438 * 17 16 14 38 38 H 1.08999 * 109.52254 * 62.50390 * 24 22 2 39 39 H 1.09002 * 109.52319 * 302.37330 * 24 22 2 40 40 H 1.09004 * 109.54016 * 176.81529 * 25 24 22 41 41 H 1.08998 * 109.54451 * 296.99022 * 25 24 22 42 42 H 1.09004 * 109.52230 * 62.92419 * 26 25 24 43 43 H 1.09002 * 109.52276 * 183.11289 * 26 25 24 44 44 H 1.08998 * 109.48104 * 177.59034 * 27 26 25 45 45 H 1.08999 * 109.48102 * 297.61630 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1470 -0.0182 -2.3571 6 8 1.8574 1.1615 -2.4118 7 6 2.6393 -0.7134 -3.5617 8 6 2.9726 -2.0685 -3.5037 9 6 3.4315 -2.7125 -4.6327 10 6 3.5646 -2.0219 -5.8266 11 6 3.2401 -0.6823 -5.8987 12 6 2.7706 -0.0186 -4.7732 13 8 2.4457 1.2951 -4.8433 14 6 2.7099 1.9299 -6.0030 15 1 3.0844 1.3739 -6.8498 16 6 2.5008 3.2968 -6.1087 17 7 2.0442 3.9739 -5.0776 18 14 2.8674 4.1765 -7.7153 19 1 1.6521 4.1756 -8.5687 20 1 3.2723 5.5768 -7.4318 21 1 3.9694 3.4761 -8.4228 22 6 2.0400 -0.7214 1.2491 23 1 1.6765 -0.2081 2.1393 24 6 3.5709 -0.7220 1.2490 25 6 4.0748 -1.4981 2.4698 26 6 3.4929 -2.9146 2.4364 27 6 1.9650 -2.8293 2.3923 28 8 1.5649 -2.0692 1.2502 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5137 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 2.2490 -1.6317 -1.1528 33 1 2.8702 -2.6112 -2.5757 34 1 3.6885 -3.7604 -4.5864 35 1 3.9254 -2.5348 -6.7060 36 1 3.3470 -0.1508 -6.8329 37 1 1.8983 4.9300 -5.1514 38 1 3.9356 0.3041 1.2938 39 1 3.9349 -1.1986 0.3388 40 1 5.1633 -1.5503 2.4448 41 1 3.7549 -0.9924 3.3808 42 1 3.8544 -3.4361 1.5501 43 1 3.8018 -3.4564 3.3304 44 1 1.5467 -3.8336 2.3253 45 1 1.6017 -2.3439 3.2981 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000272335388.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:44:51 Heat of formation + Delta-G solvation = -113.403198 kcal Electronic energy + Delta-G solvation = -27427.334049 eV Core-core repulsion = 23602.352224 eV Total energy + Delta-G solvation = -3824.981825 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.42950 -40.61527 -39.53030 -38.01921 -36.32242 -34.54450 -34.31816 -33.15486 -31.49781 -30.57264 -30.37953 -27.37343 -26.34359 -24.93844 -24.40453 -23.25692 -22.08919 -21.53599 -20.90726 -19.83051 -19.30477 -17.94328 -17.68763 -16.96773 -16.46752 -16.23062 -16.06033 -15.88520 -15.64274 -15.57265 -15.30938 -15.23085 -15.18380 -14.49348 -14.39296 -14.22232 -14.16067 -13.55227 -13.54228 -13.32250 -12.98339 -12.84326 -12.68445 -12.52371 -12.37073 -12.33339 -12.15227 -12.11675 -12.00467 -11.53975 -11.41139 -11.21310 -10.82529 -10.56401 -10.36273 -10.03543 -9.76325 -9.02770 -8.43537 -6.14605 0.13909 0.73205 1.32443 1.44053 1.51603 2.12766 2.16408 2.29203 2.78794 2.89334 3.24078 3.47605 3.56478 3.85242 3.95706 3.99872 4.07636 4.09179 4.19403 4.27639 4.31197 4.38078 4.42168 4.53374 4.59220 4.63973 4.71888 4.77163 4.87345 4.94880 4.96792 5.00850 5.08160 5.10193 5.15191 5.17891 5.19215 5.32632 5.41797 5.49320 5.61730 5.64604 5.69814 5.97221 6.17403 6.30209 6.75346 6.95626 7.53555 7.81705 8.76948 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.016720 B = 0.003548 C = 0.003153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1674.242047 B = 7890.278405 C = 8879.582719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.150 3.850 3 H 0.070 0.930 4 N -0.706 5.706 5 C 0.549 3.451 6 O -0.568 6.568 7 C -0.245 4.245 8 C -0.030 4.030 9 C -0.201 4.201 10 C -0.040 4.040 11 C -0.258 4.258 12 C 0.150 3.850 13 O -0.188 6.188 14 C -0.429 4.429 15 H 0.106 0.894 16 C -0.022 4.022 17 N -0.905 5.905 18 Si 1.022 2.978 19 H -0.262 1.262 20 H -0.272 1.272 21 H -0.248 1.248 22 C 0.100 3.900 23 H 0.086 0.914 24 C -0.153 4.153 25 C -0.118 4.118 26 C -0.153 4.153 27 C 0.056 3.944 28 O -0.389 6.389 29 H 0.073 0.927 30 H 0.081 0.919 31 H 0.024 0.976 32 H 0.410 0.590 33 H 0.153 0.847 34 H 0.163 0.837 35 H 0.154 0.846 36 H 0.124 0.876 37 H 0.270 0.730 38 H 0.064 0.936 39 H 0.062 0.938 40 H 0.071 0.929 41 H 0.072 0.928 42 H 0.067 0.933 43 H 0.091 0.909 44 H 0.108 0.892 45 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.541 -17.427 13.682 22.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.046 3.954 3 H 0.088 0.912 4 N -0.361 5.361 5 C 0.339 3.661 6 O -0.447 6.447 7 C -0.249 4.249 8 C -0.049 4.049 9 C -0.219 4.219 10 C -0.058 4.058 11 C -0.277 4.277 12 C 0.095 3.905 13 O -0.090 6.090 14 C -0.504 4.504 15 H 0.124 0.876 16 C -0.221 4.221 17 N -0.540 5.540 18 Si 0.840 3.160 19 H -0.187 1.187 20 H -0.197 1.197 21 H -0.171 1.171 22 C 0.041 3.959 23 H 0.104 0.896 24 C -0.191 4.191 25 C -0.156 4.156 26 C -0.191 4.191 27 C -0.020 4.020 28 O -0.308 6.308 29 H 0.092 0.908 30 H 0.100 0.900 31 H 0.043 0.957 32 H 0.248 0.752 33 H 0.171 0.829 34 H 0.181 0.819 35 H 0.172 0.828 36 H 0.141 0.859 37 H 0.079 0.921 38 H 0.083 0.917 39 H 0.081 0.919 40 H 0.090 0.910 41 H 0.091 0.909 42 H 0.085 0.915 43 H 0.110 0.890 44 H 0.126 0.874 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 3.051 -16.269 13.755 21.522 hybrid contribution 0.199 0.837 -0.622 1.062 sum 3.250 -15.431 13.133 20.522 Atomic orbital electron populations 1.22028 0.94804 1.02729 1.01440 1.20983 0.94825 0.95956 0.83665 0.91229 1.45629 1.68130 1.14123 1.08187 1.18513 0.77444 0.86144 0.84041 1.90919 1.50952 1.17616 1.85189 1.19328 1.17448 0.96432 0.91715 1.21257 0.93444 0.90189 1.00007 1.21156 1.06997 1.01608 0.92127 1.21422 0.93332 0.91812 0.99253 1.21306 1.10776 0.97399 0.98207 1.20066 0.91093 0.85260 0.94122 1.84181 1.69895 1.17924 1.37043 1.22040 1.46606 0.92236 0.89565 0.87646 1.26748 0.95837 0.96109 1.03377 1.70329 1.42502 1.08625 1.32580 0.84568 0.79514 0.77203 0.74699 1.18686 1.19702 1.17130 1.22210 0.93472 0.83936 0.96237 0.89595 1.22194 0.95419 1.01443 1.00031 1.21581 1.01061 0.95788 0.97140 1.22185 0.96267 0.97011 1.03594 1.22788 0.94419 0.96664 0.88170 1.87901 1.74775 1.22781 1.45344 0.90816 0.89986 0.95679 0.75236 0.82907 0.81940 0.82796 0.85865 0.92067 0.91721 0.91883 0.91017 0.90914 0.91456 0.89036 0.87398 0.92234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.55 9.34 71.98 0.67 -3.87 16 2 C 0.15 4.62 2.41 44.99 0.11 4.73 16 3 H 0.07 2.55 7.58 -2.39 -0.02 2.53 16 4 N -0.71 -24.00 4.27 -445.69 -1.90 -25.90 16 5 C 0.55 25.76 7.73 86.70 0.67 26.43 16 6 O -0.57 -34.03 14.83 16.89 0.25 -33.78 16 7 C -0.24 -11.02 5.89 -19.98 -0.12 -11.14 16 8 C -0.03 -0.98 9.54 22.52 0.21 -0.77 16 9 C -0.20 -5.63 10.03 22.25 0.22 -5.40 16 10 C -0.04 -1.29 10.03 22.30 0.22 -1.06 16 11 C -0.26 -11.27 9.16 22.36 0.20 -11.07 16 12 C 0.15 7.91 6.66 22.91 0.15 8.06 16 13 O -0.19 -12.17 7.84 0.84 0.01 -12.16 16 14 C -0.43 -26.32 9.49 67.93 0.64 -25.67 16 15 H 0.11 5.81 5.21 -2.91 -0.02 5.80 16 16 C -0.02 -1.29 5.49 84.85 0.47 -0.83 16 17 N -0.90 -59.75 13.67 21.62 0.30 -59.45 16 18 Si 1.02 44.76 29.55 68.60 2.03 46.78 16 19 H -0.26 -10.86 7.11 99.48 0.71 -10.16 16 20 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 21 H -0.25 -9.90 7.11 99.48 0.71 -9.19 16 22 C 0.10 2.16 2.40 30.63 0.07 2.23 16 23 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 24 C -0.15 -3.18 5.29 30.69 0.16 -3.01 16 25 C -0.12 -1.72 6.03 30.71 0.19 -1.54 16 26 C -0.15 -1.84 6.13 30.68 0.19 -1.65 16 27 C 0.06 0.73 6.85 72.01 0.49 1.23 16 28 O -0.39 -7.77 9.25 -148.98 -1.38 -9.15 16 29 H 0.07 2.02 7.69 -2.38 -0.02 2.00 16 30 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 31 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.41 11.35 6.02 -92.71 -0.56 10.79 16 33 H 0.15 3.60 6.40 -2.92 -0.02 3.59 16 34 H 0.16 3.03 8.06 -2.91 -0.02 3.01 16 35 H 0.15 3.63 8.06 -2.91 -0.02 3.60 16 36 H 0.12 5.45 5.64 -2.91 -0.02 5.43 16 37 H 0.27 16.34 8.31 -92.71 -0.77 15.57 16 38 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 39 H 0.06 1.47 7.38 -2.39 -0.02 1.45 16 40 H 0.07 0.99 8.14 -2.38 -0.02 0.97 16 41 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 42 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 43 H 0.09 0.75 8.14 -2.39 -0.02 0.74 16 44 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 45 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 Total: -1.00 -86.57 364.93 4.31 -82.26 By element: Atomic # 1 Polarization: 34.29 SS G_CDS: 0.45 Total: 34.73 kcal Atomic # 6 Polarization: -27.90 SS G_CDS: 4.56 Total: -23.34 kcal Atomic # 7 Polarization: -83.75 SS G_CDS: -1.61 Total: -85.36 kcal Atomic # 8 Polarization: -53.97 SS G_CDS: -1.12 Total: -55.09 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.78 kcal Total: -86.57 4.31 -82.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272335388.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.139 kcal (2) G-P(sol) polarization free energy of solvation -86.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.264 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds