Wall clock time and date at job start Tue Mar 31 2020 12:50:54
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52994 * 1
3 3 H 1.09003 * 109.47492 * 2 1
4 4 C 1.50702 * 109.47215 * 239.99238 * 2 1 3
5 5 H 1.07995 * 120.00358 * 274.79703 * 4 2 1
6 6 C 1.37879 * 119.99638 * 94.79700 * 4 2 1
7 7 N 1.31512 * 120.00035 * 184.63435 * 6 4 2
8 8 Si 1.86801 * 119.99936 * 4.62480 * 6 4 2
9 9 H 1.48504 * 109.47042 * 94.57400 * 8 6 4
10 10 H 1.48500 * 109.47256 * 214.56812 * 8 6 4
11 11 H 1.48498 * 109.47371 * 334.57198 * 8 6 4
12 12 N 1.46508 * 109.47048 * 119.99989 * 2 1 3
13 13 C 1.46498 * 120.00224 * 59.99266 * 12 2 1
14 14 C 1.34774 * 119.99548 * 240.00101 * 12 2 1
15 15 O 1.21582 * 120.00409 * 354.72757 * 14 12 2
16 16 C 1.47608 * 119.99880 * 174.73110 * 14 12 2
17 17 C 1.39730 * 120.08532 * 328.52795 * 16 14 12
18 18 C 1.37708 * 119.90912 * 179.69910 * 17 16 14
19 19 C 1.38992 * 120.08735 * 0.27682 * 18 17 16
20 20 O 1.35710 * 119.91244 * 180.02562 * 19 18 17
21 21 C 1.42905 * 116.99964 * 354.62710 * 20 19 18
22 22 H 1.08998 * 110.45415 * 334.61617 * 21 20 19
23 23 C 1.54504 * 110.51258 * 212.00680 * 21 20 19
24 24 C 1.54478 * 104.06279 * 241.35553 * 23 21 20
25 25 O 1.44419 * 104.80280 * 23.98051 * 24 23 21
26 26 C 1.44414 * 105.27852 * 319.48736 * 25 24 23
27 27 C 1.38993 * 120.17848 * 359.97438 * 19 18 17
28 28 C 1.37708 * 120.09005 * 0.02562 * 27 19 18
29 29 H 1.09003 * 109.47590 * 184.89579 * 1 2 3
30 30 H 1.09006 * 109.47382 * 304.89391 * 1 2 3
31 31 H 1.09003 * 109.47315 * 64.89402 * 1 2 3
32 32 H 0.96998 * 120.00281 * 179.97438 * 7 6 4
33 33 H 1.08992 * 109.47566 * 272.53468 * 13 12 2
34 34 H 1.09002 * 109.46649 * 32.53880 * 13 12 2
35 35 H 1.09000 * 109.46461 * 152.53142 * 13 12 2
36 36 H 1.07998 * 120.04880 * 359.97438 * 17 16 14
37 37 H 1.07999 * 119.95779 * 180.30444 * 18 17 16
38 38 H 1.08997 * 110.51494 * 0.02562 * 23 21 20
39 39 H 1.09007 * 110.50989 * 122.71418 * 23 21 20
40 40 H 1.09009 * 110.37010 * 142.81275 * 24 23 21
41 41 H 1.08999 * 110.37483 * 265.03729 * 24 23 21
42 42 H 1.09007 * 110.37189 * 281.68208 * 26 25 24
43 43 H 1.08999 * 110.37579 * 159.34211 * 26 25 24
44 44 H 1.08004 * 119.96055 * 179.97438 * 27 19 18
45 45 H 1.07997 * 120.04791 * 179.97438 * 28 27 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 1 1.8934 1.0277 0.0000
4 6 2.0323 -0.7106 -1.2304
5 1 2.1386 -1.7853 -1.2278
6 6 2.3562 0.0115 -2.3594
7 7 2.7073 -0.6140 -3.4617
8 14 2.2962 1.8782 -2.3234
9 1 3.6477 2.4110 -2.0152
10 1 1.8546 2.3849 -3.6476
11 1 1.3389 2.3227 -1.2789
12 7 2.0183 -0.6906 1.1962
13 6 1.6643 -2.0931 1.4282
14 6 2.7931 -0.0356 2.0833
15 8 3.1660 1.0968 1.8451
16 6 3.1890 -0.6930 3.3442
17 6 2.3357 -1.6196 3.9490
18 6 2.7114 -2.2354 5.1221
19 6 3.9350 -1.9320 5.7074
20 8 4.3019 -2.5413 6.8632
21 6 3.3354 -3.3919 7.4834
22 1 2.3266 -3.0928 7.1991
23 6 3.4959 -3.3636 9.0198
24 6 3.8305 -4.8257 9.3893
25 8 4.3962 -5.3901 8.1863
26 6 3.5922 -4.8679 7.1063
27 6 4.7843 -1.0070 5.1117
28 6 4.4160 -0.3868 3.9387
29 1 -0.3634 -1.0239 0.0877
30 1 -0.3634 0.5879 0.8429
31 1 -0.3634 0.4360 -0.9306
32 1 2.9348 -0.1061 -4.2562
33 1 0.7145 -2.1450 1.9603
34 1 1.5734 -2.6079 0.4717
35 1 2.4417 -2.5701 2.0250
36 1 1.3848 -1.8559 3.4948
37 1 2.0547 -2.9553 5.5876
38 1 4.3121 -2.7005 9.3065
39 1 2.5655 -3.0528 9.4953
40 1 4.5578 -4.8552 10.2007
41 1 2.9250 -5.3623 9.6727
42 1 2.6498 -5.4114 7.0377
43 1 4.1363 -4.9296 6.1639
44 1 5.7341 -0.7735 5.5699
45 1 5.0763 0.3321 3.4766
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000279333218.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:50:54
Heat of formation + Delta-G solvation = -71.013573 kcal
Electronic energy + Delta-G solvation = -26737.088676 eV
Core-core repulsion = 22913.945003 eV
Total energy + Delta-G solvation = -3823.143673 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 319.162 amu
Computer time = 0.62 seconds
Orbital eigenvalues (eV)
-40.88413 -39.76915 -38.65598 -36.84514 -35.49311 -32.88745 -32.13370 -31.24526
-30.71083 -29.53907 -28.94515 -26.44168 -25.28898 -24.12506 -23.13663 -23.04468
-21.54370 -20.59371 -18.94398 -18.48828 -17.37517 -17.03965 -16.70115 -16.39490
-16.00196 -15.67543 -15.22282 -14.96029 -14.68050 -14.45368 -14.21830 -13.68908
-13.47270 -13.27945 -13.19099 -12.69289 -12.56119 -12.46442 -12.40600 -12.19961
-12.16418 -12.00356 -11.74746 -11.57762 -11.28317 -11.11249 -11.04911 -10.77624
-10.67705 -10.46324 -10.19400 -9.73848 -9.31257 -9.10951 -9.08367 -8.60427
-8.26202 -7.68659 -6.17295 -4.19574 1.05629 1.28639 2.79337 3.20341
3.30313 3.39372 3.45768 3.46071 3.74379 3.95518 4.03728 4.28672
4.38294 4.38553 4.56514 4.65643 4.75557 4.81144 4.90590 4.99294
5.14960 5.22544 5.24351 5.25258 5.29422 5.37587 5.48828 5.59244
5.68282 5.81194 5.94854 6.06630 6.15915 6.25081 6.27663 6.33076
6.38599 6.45240 6.57432 6.61492 6.91648 7.06123 7.19375 7.45849
7.62759 8.11809 8.47493 8.83518 8.90664 9.45182 10.94536
Molecular weight = 319.16amu
Principal moments of inertia in cm(-1)
A = 0.028314 B = 0.002663 C = 0.002587
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 988.674079 B =10513.497399 C =10819.267086
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.146 4.146
2 C 0.219 3.781
3 H 0.068 0.932
4 C -0.525 4.525
5 H 0.078 0.922
6 C 0.079 3.921
7 N -0.891 5.891
8 Si 0.874 3.126
9 H -0.273 1.273
10 H -0.287 1.287
11 H -0.260 1.260
12 N -0.582 5.582
13 C 0.077 3.923
14 C 0.548 3.452
15 O -0.552 6.552
16 C -0.154 4.154
17 C -0.053 4.053
18 C -0.223 4.223
19 C 0.139 3.861
20 O -0.299 6.299
21 C 0.046 3.954
22 H 0.096 0.904
23 C -0.155 4.155
24 C 0.044 3.956
25 O -0.367 6.367
26 C 0.027 3.973
27 C -0.159 4.159
28 C -0.026 4.026
29 H 0.047 0.953
30 H 0.025 0.975
31 H 0.058 0.942
32 H 0.266 0.734
33 H 0.045 0.955
34 H 0.081 0.919
35 H 0.064 0.936
36 H 0.142 0.858
37 H 0.131 0.869
38 H 0.093 0.907
39 H 0.091 0.909
40 H 0.096 0.904
41 H 0.063 0.937
42 H 0.075 0.925
43 H 0.103 0.897
44 H 0.134 0.866
45 H 0.140 0.860
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.702 -7.776 24.734 25.983
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.205 4.205
2 C 0.119 3.881
3 H 0.086 0.914
4 C -0.563 4.563
5 H 0.096 0.904
6 C -0.125 4.125
7 N -0.528 5.528
8 Si 0.701 3.299
9 H -0.199 1.199
10 H -0.213 1.213
11 H -0.185 1.185
12 N -0.312 5.312
13 C -0.067 4.067
14 C 0.335 3.665
15 O -0.432 6.432
16 C -0.158 4.158
17 C -0.071 4.071
18 C -0.241 4.241
19 C 0.094 3.906
20 O -0.212 6.212
21 C -0.011 4.011
22 H 0.114 0.886
23 C -0.193 4.193
24 C -0.033 4.033
25 O -0.285 6.285
26 C -0.050 4.050
27 C -0.178 4.178
28 C -0.044 4.044
29 H 0.066 0.934
30 H 0.044 0.956
31 H 0.077 0.923
32 H 0.076 0.924
33 H 0.063 0.937
34 H 0.100 0.900
35 H 0.083 0.917
36 H 0.160 0.840
37 H 0.148 0.852
38 H 0.112 0.888
39 H 0.109 0.891
40 H 0.115 0.885
41 H 0.082 0.918
42 H 0.093 0.907
43 H 0.121 0.879
44 H 0.152 0.848
45 H 0.157 0.843
Dipole moment (debyes) X Y Z Total
from point charges -1.111 -7.309 24.458 25.551
hybrid contribution -0.407 0.852 -0.171 0.960
sum -1.518 -6.457 24.287 25.176
Atomic orbital electron populations
1.22217 0.98258 1.00236 0.99760 1.19439 0.90758 0.95235 0.82690
0.91371 1.21101 1.44765 0.95695 0.94747 0.90374 1.24957 0.93734
0.98549 0.95211 1.69891 1.45157 1.36053 1.01732 0.86875 0.79669
0.86111 0.77242 1.19851 1.21275 1.18451 1.48225 1.48708 1.11455
1.22817 1.21973 0.98526 0.83452 1.02727 1.18218 0.79150 0.85947
0.83144 1.90724 1.55526 1.19099 1.77883 1.20108 0.96914 1.00948
0.97815 1.21601 0.99571 0.92560 0.93415 1.21120 0.97538 1.06218
0.99268 1.19227 0.93352 0.92219 0.85829 1.86153 1.41094 1.58715
1.35252 1.23950 0.93271 0.90523 0.93352 0.88589 1.23128 1.04200
0.98929 0.92999 1.23451 0.99131 0.91502 0.89181 1.89193 1.54153
1.69936 1.15267 1.23962 0.96666 0.91695 0.92702 1.20348 1.00921
0.99045 0.97467 1.21092 0.94786 0.95944 0.92622 0.93370 0.95573
0.92290 0.92396 0.93675 0.90017 0.91701 0.84011 0.85166 0.88824
0.89054 0.88547 0.91840 0.90697 0.87891 0.84797 0.84256
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -3.03 9.25 37.15 0.34 -2.68 16
2 C 0.22 5.27 2.26 -69.08 -0.16 5.11 16
3 H 0.07 1.81 3.86 -51.93 -0.20 1.61 16
4 C -0.52 -14.38 8.74 -34.44 -0.30 -14.68 16
5 H 0.08 2.26 6.79 -52.49 -0.36 1.90 16
6 C 0.08 2.27 5.47 -17.82 -0.10 2.17 16
7 N -0.89 -26.77 13.96 55.43 0.77 -26.00 16
8 Si 0.87 22.17 27.29 -169.99 -4.64 17.53 16
9 H -0.27 -7.09 7.11 56.52 0.40 -6.69 16
10 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16
11 H -0.26 -6.38 6.39 56.52 0.36 -6.02 16
12 N -0.58 -12.15 2.75 -176.47 -0.49 -12.63 16
13 C 0.08 1.25 7.75 59.85 0.46 1.71 16
14 C 0.55 11.49 7.41 -12.44 -0.09 11.40 16
15 O -0.55 -13.65 16.08 5.29 0.09 -13.57 16
16 C -0.15 -2.53 5.29 -104.96 -0.56 -3.09 16
17 C -0.05 -0.69 7.57 -39.22 -0.30 -0.99 16
18 C -0.22 -2.44 8.96 -39.50 -0.35 -2.79 16
19 C 0.14 1.65 6.69 -39.02 -0.26 1.39 16
20 O -0.30 -3.25 9.76 -18.84 -0.18 -3.44 16
21 C 0.05 0.36 3.07 -25.16 -0.08 0.28 16
22 H 0.10 0.61 5.75 -51.93 -0.30 0.31 16
23 C -0.15 -0.94 6.90 -25.17 -0.17 -1.11 16
24 C 0.04 0.27 7.63 37.93 0.29 0.56 16
25 O -0.37 -3.55 11.65 -35.23 -0.41 -3.96 16
26 C 0.03 0.21 7.38 37.94 0.28 0.49 16
27 C -0.16 -2.02 9.97 -39.50 -0.39 -2.41 16
28 C -0.03 -0.38 9.59 -39.22 -0.38 -0.76 16
29 H 0.05 0.90 7.51 -51.93 -0.39 0.51 16
30 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16
31 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16
32 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16
33 H 0.05 0.60 6.87 -51.93 -0.36 0.24 16
34 H 0.08 1.45 6.54 -51.93 -0.34 1.11 16
35 H 0.06 0.94 5.74 -51.93 -0.30 0.64 16
36 H 0.14 1.66 5.04 -52.49 -0.26 1.40 16
37 H 0.13 1.04 5.88 -52.49 -0.31 0.73 16
38 H 0.09 0.63 8.00 -51.93 -0.42 0.22 16
39 H 0.09 0.36 8.14 -51.92 -0.42 -0.06 16
40 H 0.10 0.49 8.14 -51.92 -0.42 0.06 16
41 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16
42 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16
43 H 0.10 0.90 8.09 -51.93 -0.42 0.48 16
44 H 0.13 1.46 8.06 -52.48 -0.42 1.04 16
45 H 0.14 2.09 7.94 -52.49 -0.42 1.67 16
LS Contribution 359.23 15.07 5.41 5.41
Total: -1.00 -34.24 359.23 -7.40 -41.64
By element:
Atomic # 1 Polarization: 6.62 SS G_CDS: -6.20 Total: 0.42 kcal
Atomic # 6 Polarization: -3.64 SS G_CDS: -1.76 Total: -5.40 kcal
Atomic # 7 Polarization: -38.92 SS G_CDS: 0.29 Total: -38.63 kcal
Atomic # 8 Polarization: -20.46 SS G_CDS: -0.51 Total: -20.97 kcal
Atomic # 14 Polarization: 22.17 SS G_CDS: -4.64 Total: 17.53 kcal
Total LS contribution 5.41 Total: 5.41 kcal
Total: -34.24 -7.40 -41.64 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000279333218.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -29.373 kcal
(2) G-P(sol) polarization free energy of solvation -34.237 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.610 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.404 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.640 kcal
(6) G-S(sol) free energy of system = (1) + (5) -71.014 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.62 seconds