Wall clock time and date at job start Tue Mar 31 2020 12:50:54
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52994 * 1
3 3 H 1.09003 * 109.47492 * 2 1
4 4 C 1.50702 * 109.47215 * 239.99238 * 2 1 3
5 5 H 1.07995 * 120.00358 * 274.79703 * 4 2 1
6 6 C 1.37879 * 119.99638 * 94.79700 * 4 2 1
7 7 N 1.31512 * 120.00035 * 184.63435 * 6 4 2
8 8 Si 1.86801 * 119.99936 * 4.62480 * 6 4 2
9 9 H 1.48504 * 109.47042 * 94.57400 * 8 6 4
10 10 H 1.48500 * 109.47256 * 214.56812 * 8 6 4
11 11 H 1.48498 * 109.47371 * 334.57198 * 8 6 4
12 12 N 1.46508 * 109.47048 * 119.99989 * 2 1 3
13 13 C 1.46498 * 120.00224 * 59.99266 * 12 2 1
14 14 C 1.34774 * 119.99548 * 240.00101 * 12 2 1
15 15 O 1.21582 * 120.00409 * 354.72757 * 14 12 2
16 16 C 1.47608 * 119.99880 * 174.73110 * 14 12 2
17 17 C 1.39730 * 120.08532 * 328.52795 * 16 14 12
18 18 C 1.37708 * 119.90912 * 179.69910 * 17 16 14
19 19 C 1.38992 * 120.08735 * 0.27682 * 18 17 16
20 20 O 1.35710 * 119.91244 * 180.02562 * 19 18 17
21 21 C 1.42905 * 116.99964 * 354.62710 * 20 19 18
22 22 H 1.08998 * 110.45415 * 334.61617 * 21 20 19
23 23 C 1.54504 * 110.51258 * 212.00680 * 21 20 19
24 24 C 1.54478 * 104.06279 * 241.35553 * 23 21 20
25 25 O 1.44419 * 104.80280 * 23.98051 * 24 23 21
26 26 C 1.44414 * 105.27852 * 319.48736 * 25 24 23
27 27 C 1.38993 * 120.17848 * 359.97438 * 19 18 17
28 28 C 1.37708 * 120.09005 * 0.02562 * 27 19 18
29 29 H 1.09003 * 109.47590 * 184.89579 * 1 2 3
30 30 H 1.09006 * 109.47382 * 304.89391 * 1 2 3
31 31 H 1.09003 * 109.47315 * 64.89402 * 1 2 3
32 32 H 0.96998 * 120.00281 * 179.97438 * 7 6 4
33 33 H 1.08992 * 109.47566 * 272.53468 * 13 12 2
34 34 H 1.09002 * 109.46649 * 32.53880 * 13 12 2
35 35 H 1.09000 * 109.46461 * 152.53142 * 13 12 2
36 36 H 1.07998 * 120.04880 * 359.97438 * 17 16 14
37 37 H 1.07999 * 119.95779 * 180.30444 * 18 17 16
38 38 H 1.08997 * 110.51494 * 0.02562 * 23 21 20
39 39 H 1.09007 * 110.50989 * 122.71418 * 23 21 20
40 40 H 1.09009 * 110.37010 * 142.81275 * 24 23 21
41 41 H 1.08999 * 110.37483 * 265.03729 * 24 23 21
42 42 H 1.09007 * 110.37189 * 281.68208 * 26 25 24
43 43 H 1.08999 * 110.37579 * 159.34211 * 26 25 24
44 44 H 1.08004 * 119.96055 * 179.97438 * 27 19 18
45 45 H 1.07997 * 120.04791 * 179.97438 * 28 27 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 1 1.8934 1.0277 0.0000
4 6 2.0323 -0.7106 -1.2304
5 1 2.1386 -1.7853 -1.2278
6 6 2.3562 0.0115 -2.3594
7 7 2.7073 -0.6140 -3.4617
8 14 2.2962 1.8782 -2.3234
9 1 3.6477 2.4110 -2.0152
10 1 1.8546 2.3849 -3.6476
11 1 1.3389 2.3227 -1.2789
12 7 2.0183 -0.6906 1.1962
13 6 1.6643 -2.0931 1.4282
14 6 2.7931 -0.0356 2.0833
15 8 3.1660 1.0968 1.8451
16 6 3.1890 -0.6930 3.3442
17 6 2.3357 -1.6196 3.9490
18 6 2.7114 -2.2354 5.1221
19 6 3.9350 -1.9320 5.7074
20 8 4.3019 -2.5413 6.8632
21 6 3.3354 -3.3919 7.4834
22 1 2.3266 -3.0928 7.1991
23 6 3.4959 -3.3636 9.0198
24 6 3.8305 -4.8257 9.3893
25 8 4.3962 -5.3901 8.1863
26 6 3.5922 -4.8679 7.1063
27 6 4.7843 -1.0070 5.1117
28 6 4.4160 -0.3868 3.9387
29 1 -0.3634 -1.0239 0.0877
30 1 -0.3634 0.5879 0.8429
31 1 -0.3634 0.4360 -0.9306
32 1 2.9348 -0.1061 -4.2562
33 1 0.7145 -2.1450 1.9603
34 1 1.5734 -2.6079 0.4717
35 1 2.4417 -2.5701 2.0250
36 1 1.3848 -1.8559 3.4948
37 1 2.0547 -2.9553 5.5876
38 1 4.3121 -2.7005 9.3065
39 1 2.5655 -3.0528 9.4953
40 1 4.5578 -4.8552 10.2007
41 1 2.9250 -5.3623 9.6727
42 1 2.6498 -5.4114 7.0377
43 1 4.1363 -4.9296 6.1639
44 1 5.7341 -0.7735 5.5699
45 1 5.0763 0.3321 3.4766
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000279333218.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:50:54
Heat of formation + Delta-G solvation = -94.243820 kcal
Electronic energy + Delta-G solvation = -26738.096015 eV
Core-core repulsion = 22913.945003 eV
Total energy + Delta-G solvation = -3824.151012 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 319.162 amu
Computer time = 0.71 seconds
Orbital eigenvalues (eV)
-41.77289 -40.96437 -39.60304 -37.86663 -37.21337 -34.79736 -33.09313 -32.37934
-31.95449 -30.55920 -29.70468 -27.86662 -27.28434 -25.14346 -24.07004 -23.80590
-22.69129 -21.63590 -20.37940 -19.44716 -19.24544 -18.02880 -17.80314 -17.42241
-17.25208 -16.71247 -16.19723 -16.05435 -15.76480 -15.63093 -15.59767 -15.06198
-14.67531 -14.54813 -14.37122 -14.12001 -13.87584 -13.78242 -13.57043 -13.41635
-13.06588 -13.03149 -12.98111 -12.77556 -12.67992 -12.51292 -12.32971 -12.12275
-11.87666 -11.75525 -11.50192 -11.25965 -10.80580 -10.78188 -10.72546 -10.07918
-9.45075 -9.18751 -8.37929 -6.41501 -0.04655 0.30349 1.25416 1.32838
1.41860 1.83142 2.04536 2.25432 2.27768 2.78612 2.96874 3.04124
3.43380 3.64612 3.72894 3.74518 3.81318 4.03587 4.13488 4.20100
4.28919 4.30907 4.40187 4.46943 4.51216 4.60621 4.63547 4.70874
4.75647 4.78540 4.82282 4.86288 4.95843 4.99721 5.01823 5.11199
5.15149 5.21433 5.30991 5.43281 5.53741 5.58546 5.77843 5.81163
6.15445 6.36617 6.64026 6.71280 7.22066 7.33387 8.77424
Molecular weight = 319.16amu
Principal moments of inertia in cm(-1)
A = 0.028314 B = 0.002663 C = 0.002587
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 988.674079 B =10513.497399 C =10819.267086
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.138 4.138
2 C 0.217 3.783
3 H 0.041 0.959
4 C -0.519 4.519
5 H 0.055 0.945
6 C 0.028 3.972
7 N -0.934 5.934
8 Si 0.924 3.076
9 H -0.288 1.288
10 H -0.273 1.273
11 H -0.249 1.249
12 N -0.590 5.590
13 C 0.074 3.926
14 C 0.540 3.460
15 O -0.604 6.604
16 C -0.182 4.182
17 C -0.044 4.044
18 C -0.209 4.209
19 C 0.150 3.850
20 O -0.309 6.309
21 C 0.036 3.964
22 H 0.120 0.880
23 C -0.152 4.152
24 C 0.039 3.961
25 O -0.400 6.400
26 C 0.024 3.976
27 C -0.163 4.163
28 C -0.037 4.037
29 H 0.067 0.933
30 H 0.046 0.954
31 H 0.051 0.949
32 H 0.268 0.732
33 H 0.087 0.913
34 H 0.062 0.938
35 H 0.084 0.916
36 H 0.160 0.840
37 H 0.170 0.830
38 H 0.082 0.918
39 H 0.118 0.882
40 H 0.101 0.899
41 H 0.084 0.916
42 H 0.102 0.898
43 H 0.089 0.911
44 H 0.147 0.853
45 H 0.124 0.876
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.730 -9.064 27.982 29.649
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.196 4.196
2 C 0.115 3.885
3 H 0.059 0.941
4 C -0.557 4.557
5 H 0.073 0.927
6 C -0.171 4.171
7 N -0.574 5.574
8 Si 0.750 3.250
9 H -0.214 1.214
10 H -0.198 1.198
11 H -0.172 1.172
12 N -0.319 5.319
13 C -0.068 4.068
14 C 0.331 3.669
15 O -0.488 6.488
16 C -0.186 4.186
17 C -0.062 4.062
18 C -0.227 4.227
19 C 0.103 3.897
20 O -0.223 6.223
21 C -0.020 4.020
22 H 0.137 0.863
23 C -0.189 4.189
24 C -0.037 4.037
25 O -0.320 6.320
26 C -0.053 4.053
27 C -0.182 4.182
28 C -0.056 4.056
29 H 0.086 0.914
30 H 0.065 0.935
31 H 0.070 0.930
32 H 0.077 0.923
33 H 0.105 0.895
34 H 0.081 0.919
35 H 0.102 0.898
36 H 0.177 0.823
37 H 0.188 0.812
38 H 0.101 0.899
39 H 0.136 0.864
40 H 0.120 0.880
41 H 0.103 0.897
42 H 0.119 0.881
43 H 0.107 0.893
44 H 0.165 0.835
45 H 0.142 0.858
Dipole moment (debyes) X Y Z Total
from point charges -3.164 -8.634 27.738 29.222
hybrid contribution 0.290 1.091 -0.975 1.492
sum -2.875 -7.543 26.763 27.953
Atomic orbital electron populations
1.22064 0.95319 1.01930 1.00319 1.19254 0.92912 0.93658 0.82677
0.94072 1.21362 1.43533 0.94824 0.96013 0.92719 1.25623 0.94137
1.02198 0.95184 1.69988 1.47415 1.37489 1.02499 0.86076 0.79048
0.81908 0.77996 1.21407 1.19848 1.17240 1.48167 1.48797 1.13155
1.21786 1.22226 1.01260 0.80660 1.02631 1.18933 0.78038 0.85508
0.84422 1.90678 1.57357 1.21462 1.79330 1.19810 0.98621 1.03415
0.96720 1.21721 0.99426 0.91275 0.93770 1.21439 0.97396 1.05794
0.98088 1.19320 0.93220 0.91194 0.85922 1.86171 1.42605 1.58862
1.34631 1.24316 0.93577 0.89906 0.94186 0.86268 1.23177 1.05184
0.98651 0.91884 1.23662 1.00122 0.91656 0.88234 1.89160 1.55426
1.70628 1.16762 1.24073 0.97391 0.92029 0.91802 1.20429 1.01807
0.99211 0.96732 1.21018 0.94590 0.96420 0.93609 0.91361 0.93468
0.93019 0.92269 0.89510 0.91899 0.89764 0.82264 0.81240 0.89887
0.86389 0.88040 0.89747 0.88054 0.89305 0.83542 0.85811
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -5.48 9.25 71.98 0.67 -4.81 16
2 C 0.22 10.44 2.26 44.24 0.10 10.54 16
3 H 0.04 2.22 3.86 -2.39 -0.01 2.21 16
4 C -0.52 -29.00 8.74 25.60 0.22 -28.78 16
5 H 0.05 3.25 6.79 -2.91 -0.02 3.23 16
6 C 0.03 1.64 5.47 84.66 0.46 2.10 16
7 N -0.93 -57.71 13.96 21.45 0.30 -57.41 16
8 Si 0.92 46.82 27.29 68.60 1.87 48.69 16
9 H -0.29 -15.12 7.11 99.48 0.71 -14.41 16
10 H -0.27 -13.08 7.11 99.48 0.71 -12.37 16
11 H -0.25 -12.01 6.39 99.48 0.64 -11.37 16
12 N -0.59 -24.33 2.75 -830.48 -2.29 -26.62 16
13 C 0.07 2.25 7.75 127.77 0.99 3.24 16
14 C 0.54 22.89 7.41 86.72 0.64 23.53 16
15 O -0.60 -31.01 16.08 -3.97 -0.06 -31.07 16
16 C -0.18 -5.83 5.29 -20.08 -0.11 -5.94 16
17 C -0.04 -1.00 7.57 22.51 0.17 -0.83 16
18 C -0.21 -3.68 8.96 22.33 0.20 -3.48 16
19 C 0.15 3.10 6.69 22.63 0.15 3.25 16
20 O -0.31 -5.80 9.76 -90.31 -0.88 -6.68 16
21 C 0.04 0.42 3.07 31.61 0.10 0.52 16
22 H 0.12 0.83 5.75 -2.39 -0.01 0.81 16
23 C -0.15 -1.29 6.90 31.61 0.22 -1.08 16
24 C 0.04 0.37 7.63 72.48 0.55 0.92 16
25 O -0.40 -6.84 11.65 -148.98 -1.74 -8.57 16
26 C 0.02 0.30 7.38 72.49 0.53 0.83 16
27 C -0.16 -3.94 9.97 22.33 0.22 -3.71 16
28 C -0.04 -1.12 9.59 22.51 0.22 -0.90 16
29 H 0.07 2.40 7.51 -2.39 -0.02 2.38 16
30 H 0.05 1.66 8.14 -2.38 -0.02 1.65 16
31 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16
32 H 0.27 15.57 8.31 -92.71 -0.77 14.80 16
33 H 0.09 1.93 6.87 -2.39 -0.02 1.91 16
34 H 0.06 2.17 6.54 -2.39 -0.02 2.15 16
35 H 0.08 2.23 5.74 -2.39 -0.01 2.22 16
36 H 0.16 3.00 5.04 -2.91 -0.01 2.99 16
37 H 0.17 1.64 5.88 -2.91 -0.02 1.62 16
38 H 0.08 0.91 8.00 -2.39 -0.02 0.89 16
39 H 0.12 0.39 8.14 -2.38 -0.02 0.37 16
40 H 0.10 0.79 8.14 -2.38 -0.02 0.77 16
41 H 0.08 0.43 8.14 -2.39 -0.02 0.41 16
42 H 0.10 0.72 8.14 -2.38 -0.02 0.70 16
43 H 0.09 1.34 8.09 -2.39 -0.02 1.32 16
44 H 0.15 3.05 8.06 -2.91 -0.02 3.03 16
45 H 0.12 3.96 7.94 -2.91 -0.02 3.94 16
Total: -1.00 -78.42 359.23 3.49 -74.93
By element:
Atomic # 1 Polarization: 10.39 SS G_CDS: 0.94 Total: 11.33 kcal
Atomic # 6 Polarization: -9.94 SS G_CDS: 5.34 Total: -4.60 kcal
Atomic # 7 Polarization: -82.04 SS G_CDS: -1.99 Total: -84.03 kcal
Atomic # 8 Polarization: -43.64 SS G_CDS: -2.68 Total: -46.32 kcal
Atomic # 14 Polarization: 46.82 SS G_CDS: 1.87 Total: 48.69 kcal
Total: -78.42 3.49 -74.93 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000279333218.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -19.309 kcal
(2) G-P(sol) polarization free energy of solvation -78.420 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.730 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.486 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.935 kcal
(6) G-S(sol) free energy of system = (1) + (5) -94.244 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.71 seconds