Wall clock time and date at job start Tue Mar 31 2020 12:36:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42909 * 114.00050 * 2 1 4 4 C 1.52999 * 109.46797 * 179.97438 * 3 2 1 5 5 C 1.53006 * 109.46578 * 180.02562 * 4 3 2 6 6 H 1.08990 * 109.47433 * 55.00111 * 5 4 3 7 7 C 1.53002 * 109.46930 * 175.00245 * 5 4 3 8 8 N 1.46502 * 109.47105 * 294.99757 * 5 4 3 9 9 C 1.34769 * 120.00008 * 155.00431 * 8 5 4 10 10 O 1.21723 * 120.00323 * 359.97438 * 9 8 5 11 11 C 1.46260 * 120.00205 * 180.02562 * 9 8 5 12 12 C 1.35019 * 119.99953 * 179.97438 * 11 9 8 13 13 C 1.46960 * 119.99966 * 179.97438 * 12 11 9 14 14 C 1.40026 * 120.10278 * 180.02562 * 13 12 11 15 15 C 1.37594 * 119.89671 * 179.97438 * 14 13 12 16 16 C 1.39178 * 120.10069 * 0.25354 * 15 14 13 17 17 O 1.35579 * 119.89545 * 179.74677 * 16 15 14 18 18 C 1.34785 * 117.00142 * 354.44034 * 17 16 15 19 19 H 1.08005 * 119.99845 * 5.06100 * 18 17 16 20 20 C 1.38717 * 119.99804 * 185.06117 * 18 17 16 21 21 N 1.31502 * 120.00291 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 119.99602 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.47393 * 359.97438 * 22 20 18 24 24 H 1.48501 * 109.47291 * 119.99707 * 22 20 18 25 25 H 1.48505 * 109.47059 * 239.99462 * 22 20 18 26 26 C 1.39173 * 120.20483 * 359.49052 * 16 15 14 27 27 C 1.37597 * 120.09959 * 0.50940 * 26 16 15 28 28 H 1.09001 * 109.47021 * 59.99928 * 1 2 3 29 29 H 1.08994 * 109.47471 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47228 * 300.00420 * 1 2 3 31 31 H 1.09002 * 109.46889 * 60.00246 * 3 2 1 32 32 H 1.08995 * 109.46799 * 299.99791 * 3 2 1 33 33 H 1.08995 * 109.47458 * 60.00216 * 4 3 2 34 34 H 1.08995 * 109.47296 * 299.99512 * 4 3 2 35 35 H 1.09001 * 109.47560 * 59.99361 * 7 5 4 36 36 H 1.08998 * 109.47139 * 180.02562 * 7 5 4 37 37 H 1.09010 * 109.47063 * 299.99895 * 7 5 4 38 38 H 0.97000 * 119.99537 * 335.00153 * 8 5 4 39 39 H 1.07994 * 119.99446 * 359.97438 * 11 9 8 40 40 H 1.08003 * 120.00342 * 359.97438 * 12 11 9 41 41 H 1.07997 * 120.04748 * 359.95180 * 14 13 12 42 42 H 1.08000 * 119.95146 * 179.97438 * 15 14 13 43 43 H 0.97001 * 119.99987 * 179.97438 * 21 20 18 44 44 H 1.08004 * 119.95191 * 180.26076 * 26 16 15 45 45 H 1.08000 * 120.05078 * 179.77151 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 0.0006 5 6 4.1577 2.5824 0.0013 6 1 3.7667 3.1538 0.8430 7 6 5.6779 2.4638 0.1276 8 7 3.8236 3.2663 -1.2505 9 6 3.8032 4.6130 -1.2980 10 8 4.0617 5.2612 -0.3007 11 6 3.4691 5.2957 -2.5476 12 6 3.4481 6.6449 -2.5950 13 6 3.1130 7.3309 -3.8507 14 6 3.0911 8.7301 -3.9024 15 6 2.7773 9.3680 -5.0804 16 6 2.4768 8.6248 -6.2181 17 8 2.1632 9.2576 -7.3754 18 6 2.0479 10.5997 -7.3271 19 1 2.2833 11.1295 -6.4159 20 6 1.6270 11.3003 -8.4479 21 7 1.3409 10.6553 -9.5575 22 14 1.4680 13.1604 -8.3812 23 1 1.8470 13.6414 -7.0283 24 1 2.3666 13.7706 -9.3938 25 1 0.0634 13.5477 -8.6683 26 6 2.5025 7.2340 -6.1729 27 6 2.8152 6.5874 -4.9992 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 1.6886 1.8464 0.8900 32 1 1.6886 1.8464 -0.8900 33 1 3.8574 0.6436 -0.8891 34 1 3.8567 0.6439 0.8909 35 1 6.0690 1.8923 -0.7141 36 1 6.1212 3.4596 0.1285 37 1 5.9265 1.9549 1.0590 38 1 3.6172 2.7497 -2.0452 39 1 3.2393 4.7206 -3.4323 40 1 3.6775 7.2200 -1.7100 41 1 3.3198 9.3075 -3.0188 42 1 2.7597 10.4471 -5.1212 43 1 1.0462 11.1453 -10.3411 44 1 2.2727 6.6613 -7.0593 45 1 2.8313 5.5081 -4.9641 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299700306.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:36:00 Heat of formation + Delta-G solvation = -102.193776 kcal Electronic energy + Delta-G solvation = -24921.747683 eV Core-core repulsion = 21097.251936 eV Total energy + Delta-G solvation = -3824.495748 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.98218 -40.70473 -38.99693 -38.49860 -37.02199 -34.73202 -34.02179 -32.85986 -31.96477 -30.47320 -29.51412 -27.51686 -27.26904 -25.13230 -24.08064 -23.68595 -22.43891 -21.61608 -20.67758 -19.74156 -18.84184 -18.32615 -17.57118 -17.13237 -16.68865 -16.45505 -16.37826 -16.11629 -15.95618 -15.71357 -15.59306 -15.28354 -14.91027 -14.60300 -14.32296 -14.10315 -14.03400 -13.72400 -13.60566 -13.31042 -13.17023 -13.02925 -12.73453 -12.55933 -12.42987 -12.33543 -12.19017 -12.10851 -12.07968 -11.85275 -11.21242 -11.12009 -10.92806 -10.65362 -10.57850 -10.06690 -9.89346 -8.67752 -8.52734 -6.18720 -0.23658 0.58406 1.14321 1.35620 1.44916 1.53491 2.14758 2.29004 2.39351 2.74162 2.86312 3.17731 3.42386 3.80900 3.94320 3.95364 3.96962 4.08207 4.09407 4.31390 4.35788 4.39158 4.42469 4.48231 4.52161 4.52752 4.59003 4.66362 4.81740 4.85213 4.88449 4.94759 5.01268 5.03643 5.13080 5.19782 5.30021 5.31112 5.34258 5.56396 5.61172 5.64158 5.81949 5.97246 6.10604 6.18743 6.63285 6.91847 7.31985 7.69098 8.69575 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.021978 B = 0.001897 C = 0.001809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1273.694260 B =14756.401088 C =15473.463407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.412 6.412 3 C 0.057 3.943 4 C -0.114 4.114 5 C 0.146 3.854 6 H 0.072 0.928 7 C -0.158 4.158 8 N -0.713 5.713 9 C 0.552 3.448 10 O -0.593 6.593 11 C -0.246 4.246 12 C 0.014 3.986 13 C -0.170 4.170 14 C -0.041 4.041 15 C -0.249 4.249 16 C 0.129 3.871 17 O -0.220 6.220 18 C -0.416 4.416 19 H 0.106 0.894 20 C -0.019 4.019 21 N -0.914 5.914 22 Si 1.019 2.981 23 H -0.251 1.251 24 H -0.268 1.268 25 H -0.268 1.268 26 C -0.207 4.207 27 C -0.038 4.038 28 H 0.046 0.954 29 H 0.098 0.902 30 H 0.045 0.955 31 H 0.046 0.954 32 H 0.053 0.947 33 H 0.089 0.911 34 H 0.095 0.905 35 H 0.070 0.930 36 H 0.039 0.961 37 H 0.081 0.919 38 H 0.414 0.586 39 H 0.151 0.849 40 H 0.124 0.876 41 H 0.144 0.856 42 H 0.124 0.876 43 H 0.275 0.725 44 H 0.123 0.877 45 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.716 -18.508 18.216 26.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.332 6.332 3 C -0.020 4.020 4 C -0.152 4.152 5 C 0.041 3.959 6 H 0.090 0.910 7 C -0.216 4.216 8 N -0.365 5.365 9 C 0.343 3.657 10 O -0.476 6.476 11 C -0.266 4.266 12 C -0.006 4.006 13 C -0.171 4.171 14 C -0.059 4.059 15 C -0.268 4.268 16 C 0.077 3.923 17 O -0.125 6.125 18 C -0.492 4.492 19 H 0.123 0.877 20 C -0.218 4.218 21 N -0.551 5.551 22 Si 0.838 3.162 23 H -0.174 1.174 24 H -0.193 1.193 25 H -0.193 1.193 26 C -0.226 4.226 27 C -0.055 4.055 28 H 0.065 0.935 29 H 0.117 0.883 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.071 0.929 33 H 0.107 0.893 34 H 0.114 0.886 35 H 0.089 0.911 36 H 0.059 0.941 37 H 0.100 0.900 38 H 0.251 0.749 39 H 0.169 0.831 40 H 0.142 0.858 41 H 0.161 0.839 42 H 0.142 0.858 43 H 0.084 0.916 44 H 0.141 0.859 45 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 2.893 -18.308 18.479 26.173 hybrid contribution -0.516 1.097 -0.781 1.442 sum 2.376 -17.211 17.698 24.801 Atomic orbital electron populations 1.22903 0.79772 1.03808 1.00623 1.87811 1.21169 1.28619 1.95582 1.22610 0.94418 0.84312 1.00634 1.21728 0.92679 0.95377 1.05408 1.20879 0.95743 0.92366 0.86881 0.91025 1.22117 0.94279 1.01721 1.03517 1.45926 1.70523 1.05668 1.14333 1.18498 0.76035 0.82693 0.88494 1.90778 1.51875 1.66777 1.38180 1.22797 1.10662 0.95270 0.97897 1.22163 0.88962 0.94652 0.94801 1.18788 1.11134 0.92961 0.94190 1.21317 0.93981 0.93956 0.96658 1.21199 1.11126 1.00671 0.93829 1.20194 0.92368 0.93402 0.86318 1.83888 1.77021 1.22644 1.28945 1.21935 1.47272 0.78997 1.00957 0.87715 1.26611 0.95294 1.06184 0.93723 1.70150 1.43321 1.38779 1.02802 0.84523 0.78655 0.73413 0.79615 1.17417 1.19305 1.19324 1.20426 1.11110 0.90704 1.00377 1.21284 0.93783 1.00493 0.89959 0.93508 0.88349 0.93593 0.93583 0.92852 0.89282 0.88631 0.91097 0.94143 0.90031 0.74876 0.83136 0.85819 0.83857 0.85822 0.91595 0.85924 0.82220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 11.01 113.37 1.25 1.53 16 2 O -0.41 -6.59 10.70 -148.98 -1.59 -8.18 16 3 C 0.06 0.77 5.83 71.98 0.42 1.18 16 4 C -0.11 -1.23 5.12 30.60 0.16 -1.07 16 5 C 0.15 2.10 2.58 44.99 0.12 2.22 16 6 H 0.07 1.34 7.57 -2.39 -0.02 1.32 16 7 C -0.16 -2.15 9.48 71.98 0.68 -1.47 16 8 N -0.71 -11.15 4.53 -446.91 -2.02 -13.17 16 9 C 0.55 12.82 7.70 86.33 0.66 13.48 16 10 O -0.59 -18.54 15.89 -4.42 -0.07 -18.61 16 11 C -0.25 -5.37 9.41 23.62 0.22 -5.15 16 12 C 0.01 0.37 9.45 23.82 0.23 0.59 16 13 C -0.17 -5.21 5.87 -20.13 -0.12 -5.33 16 14 C -0.04 -1.39 9.78 22.55 0.22 -1.17 16 15 C -0.25 -10.41 9.14 22.34 0.20 -10.21 16 16 C 0.13 6.13 6.66 22.72 0.15 6.28 16 17 O -0.22 -12.70 9.74 -20.40 -0.20 -12.90 16 18 C -0.42 -23.36 9.48 67.93 0.64 -22.72 16 19 H 0.11 5.39 5.18 -2.91 -0.02 5.38 16 20 C -0.02 -1.07 5.49 84.86 0.47 -0.60 16 21 N -0.91 -54.30 13.67 21.62 0.30 -54.00 16 22 Si 1.02 41.48 29.55 68.60 2.03 43.51 16 23 H -0.25 -9.44 7.11 99.48 0.71 -8.73 16 24 H -0.27 -10.49 7.11 99.48 0.71 -9.79 16 25 H -0.27 -10.51 7.11 99.48 0.71 -9.80 16 26 C -0.21 -8.18 9.97 22.34 0.22 -7.95 16 27 C -0.04 -1.15 9.40 22.55 0.21 -0.94 16 28 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 29 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.05 0.47 8.14 -2.39 -0.02 0.45 16 31 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.05 0.70 7.75 -2.39 -0.02 0.68 16 33 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 34 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 35 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 36 H 0.04 0.76 8.14 -2.39 -0.02 0.74 16 37 H 0.08 0.85 8.14 -2.38 -0.02 0.83 16 38 H 0.41 4.23 8.58 -92.71 -0.80 3.44 16 39 H 0.15 2.46 6.06 -2.91 -0.02 2.44 16 40 H 0.12 3.31 7.52 -2.91 -0.02 3.29 16 41 H 0.14 3.94 8.06 -2.91 -0.02 3.91 16 42 H 0.12 5.25 5.62 -2.91 -0.02 5.23 16 43 H 0.27 14.90 8.31 -92.71 -0.77 14.13 16 44 H 0.12 4.69 8.06 -2.91 -0.02 4.67 16 45 H 0.16 3.50 6.16 -2.91 -0.02 3.48 16 Total: -1.00 -73.03 383.95 4.38 -68.65 By element: Atomic # 1 Polarization: 25.82 SS G_CDS: 0.21 Total: 26.03 kcal Atomic # 6 Polarization: -37.05 SS G_CDS: 5.74 Total: -31.31 kcal Atomic # 7 Polarization: -65.45 SS G_CDS: -1.73 Total: -67.18 kcal Atomic # 8 Polarization: -37.83 SS G_CDS: -1.86 Total: -39.69 kcal Atomic # 14 Polarization: 41.48 SS G_CDS: 2.03 Total: 43.51 kcal Total: -73.03 4.38 -68.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299700306.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.548 kcal (2) G-P(sol) polarization free energy of solvation -73.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.646 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds