Wall clock time and date at job start Tue Mar 31 2020 13:07:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09000 * 109.47575 * 2 1 4 4 N 1.46502 * 109.46985 * 119.99648 * 2 1 3 5 5 C 1.34779 * 120.00004 * 274.99926 * 4 2 1 6 6 O 1.21718 * 119.99908 * 0.02562 * 5 4 2 7 7 C 1.46255 * 119.99865 * 179.97438 * 5 4 2 8 8 C 1.35018 * 120.00031 * 179.97438 * 7 5 4 9 9 C 1.46960 * 120.00380 * 180.02562 * 8 7 5 10 10 C 1.40026 * 120.10267 * 180.02562 * 9 8 7 11 11 C 1.37594 * 119.89660 * 179.97438 * 10 9 8 12 12 C 1.39178 * 120.10071 * 0.27233 * 11 10 9 13 13 O 1.35579 * 119.89553 * 179.70771 * 12 11 10 14 14 C 1.34781 * 117.00320 * 354.44312 * 13 12 11 15 15 H 1.08005 * 119.99725 * 5.05569 * 14 13 12 16 16 C 1.38715 * 120.00342 * 185.05925 * 14 13 12 17 17 N 1.31515 * 119.99717 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 120.00159 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47198 * 89.99794 * 18 16 14 20 20 H 1.48504 * 109.46987 * 209.99932 * 18 16 14 21 21 H 1.48498 * 109.46817 * 329.99488 * 18 16 14 22 22 C 1.39173 * 120.20477 * 359.44770 * 12 11 10 23 23 C 1.37597 * 120.09926 * 0.55723 * 22 12 11 24 24 C 1.53001 * 109.47466 * 239.99460 * 2 1 3 25 25 H 1.08995 * 109.47488 * 300.00473 * 24 2 1 26 26 C 1.52997 * 109.47484 * 180.02562 * 24 2 1 27 27 C 1.53005 * 109.46766 * 60.00224 * 24 2 1 28 28 O 1.42902 * 109.46625 * 184.99903 * 27 24 2 29 29 H 1.08995 * 109.47432 * 300.00526 * 1 2 3 30 30 H 1.09005 * 109.46869 * 60.00053 * 1 2 3 31 31 H 1.08995 * 109.47153 * 179.97438 * 1 2 3 32 32 H 0.97004 * 120.00347 * 95.00293 * 4 2 1 33 33 H 1.08003 * 120.00046 * 0.02562 * 7 5 4 34 34 H 1.08003 * 119.99920 * 0.02562 * 8 7 5 35 35 H 1.08002 * 120.05214 * 359.95709 * 10 9 8 36 36 H 1.08001 * 119.95149 * 180.02562 * 11 10 9 37 37 H 0.96993 * 119.99812 * 180.02562 * 17 16 14 38 38 H 1.08004 * 119.95204 * 180.27325 * 22 12 11 39 39 H 1.08000 * 120.05069 * 179.74232 * 23 22 12 40 40 H 1.09007 * 109.46949 * 300.00118 * 26 24 2 41 41 H 1.09001 * 109.47101 * 59.99532 * 26 24 2 42 42 H 1.08995 * 109.47449 * 180.02562 * 26 24 2 43 43 H 1.08991 * 109.46813 * 305.00092 * 27 24 2 44 44 H 1.09001 * 109.46902 * 65.00213 * 27 24 2 45 45 H 0.96706 * 113.99276 * 179.97438 * 28 27 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0182 -0.6905 1.1962 5 6 2.1470 -0.0181 2.3572 6 8 1.8571 1.1628 2.4119 7 6 2.6339 -0.7077 3.5515 8 6 2.7634 -0.0339 4.7144 9 6 3.2532 -0.7266 5.9144 10 6 3.3877 -0.0300 7.1217 11 6 3.8462 -0.6829 8.2427 12 6 4.1815 -2.0321 8.1766 13 8 4.6385 -2.6698 9.2823 14 6 4.8534 -1.9158 10.3787 15 1 4.5850 -0.8696 10.3757 16 6 5.4192 -2.4834 11.5109 17 7 5.7455 -3.7575 11.5147 18 14 5.7163 -1.4386 13.0306 19 1 4.5188 -1.4883 13.9073 20 1 6.8929 -1.9630 13.7695 21 1 5.9735 -0.0341 12.6230 22 6 4.0439 -2.7299 6.9804 23 6 3.5863 -2.0853 5.8542 24 6 2.0400 -0.7214 -1.2492 25 1 1.6767 -1.7490 -1.2492 26 6 3.5700 -0.7219 -1.2488 27 6 1.5301 -0.0001 -2.4985 28 8 1.9082 -0.7383 -3.6622 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 2.2490 -1.6317 1.1528 33 1 2.8908 -1.7556 3.5031 34 1 2.5069 1.0141 4.7628 35 1 3.1323 1.0181 7.1727 36 1 3.9500 -0.1466 9.1744 37 1 6.1407 -4.1545 12.3065 38 1 4.3011 -3.7779 6.9348 39 1 3.4838 -2.6266 4.9252 40 1 3.9337 0.3057 -1.2487 41 1 3.9330 -1.2359 -0.3588 42 1 3.9334 -1.2354 -2.1389 43 1 0.4438 0.0781 -2.4548 44 1 1.9647 0.9984 -2.5444 45 1 1.6170 -0.3386 -4.4932 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000305146317.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:07:56 Heat of formation + Delta-G solvation = -87.792162 kcal Electronic energy + Delta-G solvation = -25046.883837 eV Core-core repulsion = 21223.012590 eV Total energy + Delta-G solvation = -3823.871247 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.96182 -39.17477 -38.10776 -36.90574 -35.98304 -33.22359 -32.71389 -32.25272 -30.43840 -30.20044 -28.19166 -26.38706 -25.68877 -24.29542 -22.74535 -22.11429 -20.68547 -20.63113 -19.23737 -18.21570 -17.90069 -17.15552 -17.00038 -16.18740 -15.51354 -14.99924 -14.90655 -14.80621 -14.50969 -14.25743 -13.90253 -13.83846 -13.72377 -13.63691 -13.35583 -13.03995 -12.88316 -12.60023 -12.50553 -11.94021 -11.93526 -11.77808 -11.71884 -11.56016 -11.20982 -11.13107 -11.07465 -10.93060 -10.68257 -10.54154 -10.34947 -9.76829 -9.60717 -9.49782 -9.15722 -8.85351 -8.38536 -7.11665 -6.65473 -4.20356 1.07341 2.13288 2.55982 3.03625 3.04623 3.09445 3.09820 3.58045 3.81994 3.86974 4.38915 4.46868 4.50917 4.69973 4.91742 4.93579 4.99858 5.04149 5.04543 5.12756 5.23840 5.27347 5.40592 5.42614 5.52667 5.57297 5.61941 5.66805 5.70159 5.87025 5.95420 6.01027 6.02314 6.11845 6.37919 6.47208 6.50647 6.61266 6.78977 6.91720 7.12811 7.17949 7.23484 7.27957 7.55910 7.63707 7.79894 8.35232 8.79316 9.46269 10.51157 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.037958 B = 0.001778 C = 0.001735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 737.472140 B =15746.688942 C =16137.918166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.149 3.851 3 H 0.088 0.912 4 N -0.727 5.727 5 C 0.558 3.442 6 O -0.559 6.559 7 C -0.283 4.283 8 C 0.038 3.962 9 C -0.199 4.199 10 C -0.035 4.035 11 C -0.242 4.242 12 C 0.167 3.833 13 O -0.162 6.162 14 C -0.393 4.393 15 H 0.097 0.903 16 C 0.042 3.958 17 N -0.852 5.852 18 Si 0.945 3.055 19 H -0.271 1.271 20 H -0.275 1.275 21 H -0.265 1.265 22 C -0.200 4.200 23 C -0.043 4.043 24 C -0.099 4.099 25 H 0.082 0.918 26 C -0.144 4.144 27 C 0.080 3.920 28 O -0.572 6.572 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.058 0.942 32 H 0.400 0.600 33 H 0.123 0.877 34 H 0.122 0.878 35 H 0.114 0.886 36 H 0.131 0.869 37 H 0.274 0.726 38 H 0.121 0.879 39 H 0.118 0.882 40 H 0.053 0.947 41 H 0.058 0.942 42 H 0.063 0.937 43 H 0.052 0.948 44 H 0.048 0.952 45 H 0.380 0.620 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.380 5.657 -22.742 24.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.044 3.956 3 H 0.106 0.894 4 N -0.378 5.378 5 C 0.350 3.650 6 O -0.440 6.440 7 C -0.304 4.304 8 C 0.019 3.981 9 C -0.200 4.200 10 C -0.053 4.053 11 C -0.262 4.262 12 C 0.110 3.890 13 O -0.063 6.063 14 C -0.469 4.469 15 H 0.115 0.885 16 C -0.165 4.165 17 N -0.485 5.485 18 Si 0.769 3.231 19 H -0.196 1.196 20 H -0.200 1.200 21 H -0.190 1.190 22 C -0.219 4.219 23 C -0.061 4.061 24 C -0.118 4.118 25 H 0.101 0.899 26 C -0.201 4.201 27 C 0.002 3.998 28 O -0.378 6.378 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.077 0.923 32 H 0.234 0.766 33 H 0.141 0.859 34 H 0.140 0.860 35 H 0.132 0.868 36 H 0.149 0.851 37 H 0.084 0.916 38 H 0.139 0.861 39 H 0.136 0.864 40 H 0.072 0.928 41 H 0.077 0.923 42 H 0.082 0.918 43 H 0.070 0.930 44 H 0.066 0.934 45 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -7.137 5.668 -22.005 23.817 hybrid contribution -0.034 0.380 0.347 0.516 sum -7.171 6.048 -21.657 23.602 Atomic orbital electron populations 1.22284 0.95415 1.02312 1.02597 1.20770 0.93838 0.97427 0.83531 0.89383 1.45867 1.68584 1.13937 1.09422 1.18398 0.76761 0.86427 0.83405 1.90766 1.51654 1.16138 1.85428 1.22436 1.13886 1.00986 0.93142 1.22280 0.86655 0.98473 0.90725 1.18464 1.13541 0.94446 0.93551 1.20989 0.94483 0.98294 0.91571 1.21100 1.09934 0.95322 0.99799 1.19616 0.90937 0.90823 0.87585 1.83904 1.69374 1.36091 1.16963 1.21478 1.42107 0.94409 0.88886 0.88536 1.25396 0.95663 0.96501 0.98904 1.70014 1.37438 1.11064 1.29940 0.85644 0.78543 0.79258 0.79671 1.19634 1.20044 1.18950 1.20150 1.10221 1.00459 0.91059 1.20881 0.95150 0.93222 0.96848 1.21367 0.97324 1.00627 0.92508 0.89922 1.21763 0.93916 1.02195 1.02232 1.22231 0.98309 0.94080 0.85155 1.86462 1.81621 1.53324 1.16377 0.91672 0.91734 0.92319 0.76606 0.85918 0.85967 0.86820 0.85122 0.91598 0.86132 0.86414 0.92755 0.92277 0.91808 0.92950 0.93367 0.77344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.40 9.14 37.15 0.34 -1.06 16 2 C 0.15 1.35 2.16 -67.93 -0.15 1.20 16 3 H 0.09 0.95 7.58 -51.93 -0.39 0.55 16 4 N -0.73 -7.32 4.38 -55.25 -0.24 -7.56 16 5 C 0.56 7.63 7.70 -13.04 -0.10 7.53 16 6 O -0.56 -9.53 15.89 5.17 0.08 -9.44 16 7 C -0.28 -3.83 9.41 -37.51 -0.35 -4.18 16 8 C 0.04 0.58 9.45 -37.19 -0.35 0.23 16 9 C -0.20 -3.38 5.87 -105.03 -0.62 -4.00 16 10 C -0.03 -0.62 9.78 -39.15 -0.38 -1.01 16 11 C -0.24 -5.01 9.14 -39.47 -0.36 -5.37 16 12 C 0.17 3.83 6.66 -38.89 -0.26 3.57 16 13 O -0.16 -4.41 9.74 0.71 0.01 -4.40 16 14 C -0.39 -10.45 9.48 30.91 0.29 -10.15 16 15 H 0.10 2.35 5.18 -52.48 -0.27 2.08 16 16 C 0.04 1.09 5.49 -17.51 -0.10 0.99 16 17 N -0.85 -23.82 13.67 55.48 0.76 -23.06 16 18 Si 0.94 19.51 29.55 -169.99 -5.02 14.49 16 19 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 20 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16 21 H -0.27 -5.27 7.11 56.52 0.40 -4.87 16 22 C -0.20 -3.99 9.97 -39.47 -0.39 -4.38 16 23 C -0.04 -0.73 9.40 -39.15 -0.37 -1.10 16 24 C -0.10 -0.74 2.26 -90.62 -0.20 -0.95 16 25 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 26 C -0.14 -1.16 8.93 37.16 0.33 -0.83 16 27 C 0.08 0.51 6.21 37.16 0.23 0.74 16 28 O -0.57 -3.93 13.20 -35.23 -0.46 -4.39 16 29 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 30 H 0.06 0.42 6.32 -51.93 -0.33 0.09 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.40 3.15 8.37 -40.82 -0.34 2.81 16 33 H 0.12 1.42 6.07 -52.48 -0.32 1.10 16 34 H 0.12 1.84 7.52 -52.48 -0.39 1.45 16 35 H 0.11 1.71 8.06 -52.49 -0.42 1.29 16 36 H 0.13 2.68 5.62 -52.49 -0.29 2.38 16 37 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 38 H 0.12 2.29 8.06 -52.48 -0.42 1.87 16 39 H 0.12 1.63 6.16 -52.49 -0.32 1.30 16 40 H 0.05 0.46 8.14 -51.92 -0.42 0.03 16 41 H 0.06 0.48 7.44 -51.93 -0.39 0.09 16 42 H 0.06 0.53 7.82 -51.93 -0.41 0.13 16 43 H 0.05 0.28 6.17 -51.93 -0.32 -0.04 16 44 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 45 H 0.38 0.94 9.12 45.56 0.42 1.35 16 LS Contribution 377.32 15.07 5.69 5.69 Total: -1.00 -31.96 377.32 -7.09 -39.05 By element: Atomic # 1 Polarization: 13.86 SS G_CDS: -5.46 Total: 8.40 kcal Atomic # 6 Polarization: -16.32 SS G_CDS: -2.44 Total: -18.76 kcal Atomic # 7 Polarization: -31.14 SS G_CDS: 0.52 Total: -30.62 kcal Atomic # 8 Polarization: -17.86 SS G_CDS: -0.38 Total: -18.24 kcal Atomic # 14 Polarization: 19.51 SS G_CDS: -5.02 Total: 14.49 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -31.96 -7.09 -39.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000305146317.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.742 kcal (2) G-P(sol) polarization free energy of solvation -31.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.051 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds