Wall clock time and date at job start Tue Mar 31 2020 12:18:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.47040 * 2 1 4 4 N 1.46499 * 109.46675 * 119.99788 * 2 1 3 5 5 S 1.65602 * 120.00257 * 264.99917 * 4 2 1 6 6 O 1.42097 * 104.27765 * 181.07655 * 5 4 2 7 7 O 1.42101 * 104.27512 * 308.93186 * 5 4 2 8 8 C 1.81401 * 104.44975 * 65.00222 * 5 4 2 9 9 C 1.52996 * 109.47245 * 180.02562 * 8 5 4 10 10 C 1.53002 * 109.46793 * 300.00278 * 9 8 5 11 11 C 1.53003 * 109.47337 * 59.99758 * 9 8 5 12 12 C 1.50696 * 109.47383 * 180.02562 * 9 8 5 13 13 H 1.08001 * 119.99486 * 359.97438 * 12 9 8 14 14 C 1.37871 * 120.00277 * 179.97438 * 12 9 8 15 15 N 1.31517 * 120.00310 * 359.97438 * 14 12 9 16 16 Si 1.86799 * 120.00202 * 179.97438 * 14 12 9 17 17 H 1.48499 * 109.46981 * 89.99802 * 16 14 12 18 18 H 1.48497 * 109.47272 * 209.99829 * 16 14 12 19 19 H 1.48500 * 109.47182 * 330.00037 * 16 14 12 20 20 C 1.52997 * 109.47082 * 239.99896 * 2 1 3 21 21 C 1.53177 * 109.54370 * 65.00403 * 20 2 1 22 22 C 1.53098 * 109.21356 * 183.18188 * 21 20 2 23 23 O 1.42899 * 109.40993 * 57.57693 * 22 21 20 24 24 C 1.42898 * 114.10053 * 298.83671 * 23 22 21 25 25 C 1.53097 * 109.41405 * 61.16391 * 24 23 22 26 26 H 1.09000 * 109.47010 * 300.00549 * 1 2 3 27 27 H 1.09008 * 109.46807 * 59.99657 * 1 2 3 28 28 H 1.08991 * 109.46972 * 180.02562 * 1 2 3 29 29 H 0.96999 * 120.00186 * 85.00532 * 4 2 1 30 30 H 1.09003 * 109.46814 * 300.00170 * 8 5 4 31 31 H 1.09001 * 109.46716 * 60.00097 * 8 5 4 32 32 H 1.08993 * 109.47524 * 60.00309 * 10 9 8 33 33 H 1.09005 * 109.46673 * 179.97438 * 10 9 8 34 34 H 1.08997 * 109.47140 * 299.99190 * 10 9 8 35 35 H 1.09003 * 109.47009 * 59.99870 * 11 9 8 36 36 H 1.08991 * 109.47307 * 179.97438 * 11 9 8 37 37 H 1.09005 * 109.46999 * 300.00444 * 11 9 8 38 38 H 0.96992 * 120.00581 * 180.02562 * 15 14 12 39 39 H 1.09005 * 109.61074 * 185.22293 * 20 2 1 40 40 H 1.09002 * 109.52487 * 63.24399 * 21 20 2 41 41 H 1.09004 * 109.52023 * 303.12019 * 21 20 2 42 42 H 1.08999 * 109.47354 * 177.55660 * 22 21 20 43 43 H 1.08999 * 109.48099 * 297.59428 * 22 21 20 44 44 H 1.09007 * 109.48578 * 181.14563 * 24 23 22 45 45 H 1.09003 * 109.48319 * 301.17106 * 24 23 22 46 46 H 1.09002 * 109.52138 * 62.29619 * 25 24 23 47 47 H 1.09005 * 109.52063 * 182.42027 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6906 1.1962 5 16 2.4121 0.1772 2.5506 6 8 2.8605 -0.8029 3.4766 7 8 3.2874 1.1906 2.0751 8 6 0.8407 0.8990 3.0985 9 6 1.0752 1.7351 4.3582 10 6 1.6399 0.8423 5.4650 11 6 2.0706 2.8552 4.0489 12 6 -0.2304 2.3342 4.8138 13 1 -1.1367 2.1385 4.2599 14 6 -0.2678 3.1321 5.9375 15 7 0.8357 3.3700 6.6123 16 14 -1.8860 3.8753 6.5018 17 1 -2.5564 2.9440 7.4444 18 1 -1.6256 5.1681 7.1846 19 1 -2.7624 4.1047 5.3252 20 6 2.0400 -0.7213 -1.2492 21 6 1.6357 0.0685 -2.4978 22 6 2.0800 -0.6995 -3.7455 23 8 1.4939 -2.0027 -3.7347 24 6 1.8752 -2.8047 -2.6152 25 6 1.4228 -2.1213 -1.3220 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 2.1109 -1.6561 1.1950 30 1 0.4386 1.5353 2.3101 31 1 0.1315 0.1010 3.3185 32 1 2.5841 0.4087 5.1358 33 1 1.8074 1.4381 6.3623 34 1 0.9308 0.0444 5.6854 35 1 1.6683 3.4912 3.2603 36 1 2.2373 3.4511 4.9461 37 1 3.0148 2.4214 3.7196 38 1 0.8094 3.9310 7.4030 39 1 3.1260 -0.8043 -1.2060 40 1 2.1165 1.0467 -2.4817 41 1 0.5532 0.1950 -2.5141 42 1 1.7562 -0.1626 -4.6372 43 1 3.1663 -0.7893 -3.7495 44 1 1.4040 -3.7846 -2.6925 45 1 2.9588 -2.9223 -2.6044 46 1 0.3358 -2.0400 -1.3141 47 1 1.7503 -2.7100 -0.4651 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331344135.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:18:58 Heat of formation + Delta-G solvation = -135.874375 kcal Electronic energy + Delta-G solvation = -26863.625308 eV Core-core repulsion = 23173.113012 eV Total energy + Delta-G solvation = -3690.512297 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.165 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.95946 -37.06454 -36.45184 -36.29149 -35.30661 -32.84058 -31.69549 -31.36181 -29.31335 -26.76911 -25.72914 -25.50106 -25.23912 -23.90328 -22.26555 -19.64746 -19.61424 -18.80256 -17.48750 -16.63271 -16.27687 -15.93329 -15.87355 -15.33115 -15.04768 -14.95105 -14.77236 -14.60049 -13.92465 -13.61075 -13.33508 -13.03530 -12.98288 -12.56234 -12.51208 -12.14952 -12.07706 -11.87780 -11.54003 -11.44256 -11.25834 -11.20558 -11.08904 -11.08039 -10.91580 -10.76074 -10.70601 -10.38659 -10.36143 -10.28270 -10.10485 -9.83690 -9.66510 -9.64092 -9.23965 -8.68871 -8.41483 -6.04711 -4.16820 0.86495 3.18817 3.24610 3.32053 3.33813 3.62415 4.27608 4.36327 4.40556 4.45075 4.50219 4.74437 4.81149 4.94715 5.02200 5.10879 5.12912 5.20359 5.23174 5.30664 5.40958 5.51056 5.55237 5.61955 5.64860 5.70745 5.76241 5.81864 5.84031 5.98613 6.21014 6.24805 6.40655 6.69157 6.78396 6.89534 6.92873 7.01111 7.13898 7.30260 7.49114 7.66451 7.96768 8.08251 8.31630 8.81690 9.48721 10.96609 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.023115 B = 0.003435 C = 0.003225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1211.017749 B = 8148.737177 C = 8681.073207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.151 3.849 3 H 0.094 0.906 4 N -1.125 6.125 5 S 2.592 3.408 6 O -0.967 6.967 7 O -0.965 6.965 8 C -0.582 4.582 9 C 0.082 3.918 10 C -0.164 4.164 11 C -0.163 4.163 12 C -0.502 4.502 13 H 0.059 0.941 14 C 0.065 3.935 15 N -0.884 5.884 16 Si 0.896 3.104 17 H -0.281 1.281 18 H -0.286 1.286 19 H -0.275 1.275 20 C -0.092 4.092 21 C -0.155 4.155 22 C 0.061 3.939 23 O -0.385 6.385 24 C 0.061 3.939 25 C -0.157 4.157 26 H 0.068 0.932 27 H 0.070 0.930 28 H 0.067 0.933 29 H 0.409 0.591 30 H 0.118 0.882 31 H 0.119 0.881 32 H 0.027 0.973 33 H 0.095 0.905 34 H 0.036 0.964 35 H 0.036 0.964 36 H 0.095 0.905 37 H 0.028 0.972 38 H 0.262 0.738 39 H 0.080 0.920 40 H 0.078 0.922 41 H 0.079 0.921 42 H 0.094 0.906 43 H 0.050 0.950 44 H 0.093 0.907 45 H 0.049 0.951 46 H 0.081 0.919 47 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.766 -8.947 -17.424 19.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C 0.044 3.956 3 H 0.112 0.888 4 N -0.882 5.882 5 S 2.691 3.309 6 O -0.957 6.957 7 O -0.955 6.955 8 C -0.716 4.716 9 C 0.080 3.920 10 C -0.221 4.221 11 C -0.221 4.221 12 C -0.541 4.541 13 H 0.077 0.923 14 C -0.137 4.137 15 N -0.522 5.522 16 Si 0.723 3.277 17 H -0.207 1.207 18 H -0.211 1.211 19 H -0.200 1.200 20 C -0.112 4.112 21 C -0.193 4.193 22 C -0.015 4.015 23 O -0.304 6.304 24 C -0.016 4.016 25 C -0.194 4.194 26 H 0.087 0.913 27 H 0.089 0.911 28 H 0.085 0.915 29 H 0.243 0.757 30 H 0.136 0.864 31 H 0.137 0.863 32 H 0.046 0.954 33 H 0.114 0.886 34 H 0.055 0.945 35 H 0.055 0.945 36 H 0.113 0.887 37 H 0.047 0.953 38 H 0.073 0.927 39 H 0.098 0.902 40 H 0.097 0.903 41 H 0.098 0.902 42 H 0.112 0.888 43 H 0.068 0.932 44 H 0.111 0.889 45 H 0.067 0.933 46 H 0.100 0.900 47 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 1.602 -8.651 -17.056 19.192 hybrid contribution -1.415 0.174 0.538 1.524 sum 0.187 -8.477 -16.518 18.567 Atomic orbital electron populations 1.22612 0.95420 1.03185 1.03231 1.20747 0.93962 0.96648 0.84290 0.88799 1.55948 1.84441 1.19468 1.28293 1.05617 0.78380 0.74375 0.72577 1.93549 1.80646 1.59722 1.61780 1.93537 1.62583 1.59805 1.79592 1.30617 1.18882 1.11392 1.10675 1.17928 0.96871 0.90839 0.86381 1.22274 0.97535 0.98902 1.03434 1.22271 0.96290 1.00639 1.02902 1.20935 0.92623 1.29846 1.10695 0.92323 1.24937 0.96450 0.96056 0.96292 1.69799 1.26302 1.37953 1.18119 0.86540 0.83661 0.78637 0.78820 1.20661 1.21136 1.19958 1.21419 1.00886 0.95002 0.93895 1.22320 1.03023 0.99566 0.94366 1.22576 0.97194 0.83627 0.98149 1.87922 1.71381 1.25913 1.45137 1.22582 0.99200 0.94259 0.85571 1.22358 1.02450 0.96262 0.98353 0.91282 0.91145 0.91456 0.75749 0.86356 0.86262 0.95431 0.88643 0.94488 0.94513 0.88676 0.95345 0.92741 0.90193 0.90289 0.90220 0.88832 0.93208 0.88934 0.93267 0.90040 0.90736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.87 8.75 37.16 0.32 -1.55 16 2 C 0.15 1.70 2.59 -67.93 -0.18 1.52 16 3 H 0.09 1.14 7.48 -51.93 -0.39 0.75 16 4 N -1.13 -14.63 5.33 -4.89 -0.03 -14.66 16 5 S 2.59 47.01 4.47 -107.50 -0.48 46.53 16 6 O -0.97 -20.12 15.70 -57.54 -0.90 -21.02 16 7 O -0.97 -19.93 15.01 -57.54 -0.86 -20.79 16 8 C -0.58 -11.08 4.16 37.16 0.15 -10.92 16 9 C 0.08 1.96 0.52 -155.66 -0.08 1.88 16 10 C -0.16 -4.02 7.77 37.16 0.29 -3.73 16 11 C -0.16 -3.98 7.78 37.16 0.29 -3.69 16 12 C -0.50 -13.02 8.01 -34.44 -0.28 -13.30 16 13 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 14 C 0.06 1.70 5.15 -17.82 -0.09 1.61 16 15 N -0.88 -24.01 9.35 55.43 0.52 -23.49 16 16 Si 0.90 20.50 29.54 -169.99 -5.02 15.48 16 17 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 18 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 19 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 20 C -0.09 -0.86 2.25 -90.44 -0.20 -1.06 16 21 C -0.15 -1.26 5.24 -26.59 -0.14 -1.40 16 22 C 0.06 0.49 6.84 37.21 0.25 0.74 16 23 O -0.38 -3.76 10.76 -35.23 -0.38 -4.14 16 24 C 0.06 0.49 6.84 37.21 0.25 0.74 16 25 C -0.16 -1.29 4.84 -26.59 -0.13 -1.42 16 26 H 0.07 0.77 5.78 -51.93 -0.30 0.47 16 27 H 0.07 0.60 6.51 -51.92 -0.34 0.27 16 28 H 0.07 0.61 6.28 -51.93 -0.33 0.28 16 29 H 0.41 4.51 7.38 -34.47 -0.25 4.26 16 30 H 0.12 2.02 6.77 -51.92 -0.35 1.67 16 31 H 0.12 2.07 8.14 -51.92 -0.42 1.64 16 32 H 0.03 0.64 5.46 -51.93 -0.28 0.36 16 33 H 0.09 2.53 6.07 -51.93 -0.32 2.21 16 34 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.04 0.85 8.14 -51.93 -0.42 0.42 16 36 H 0.09 2.51 6.07 -51.93 -0.32 2.19 16 37 H 0.03 0.66 5.46 -51.93 -0.28 0.37 16 38 H 0.26 6.82 8.31 -40.82 -0.34 6.49 16 39 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 41 H 0.08 0.64 6.44 -51.93 -0.33 0.30 16 42 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 44 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 45 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 46 H 0.08 0.68 6.18 -51.93 -0.32 0.35 16 47 H 0.07 0.57 6.88 -51.93 -0.36 0.21 16 LS Contribution 354.33 15.07 5.34 5.34 Total: -1.00 -31.80 354.33 -8.86 -40.66 By element: Atomic # 1 Polarization: 14.18 SS G_CDS: -7.51 Total: 6.66 kcal Atomic # 6 Polarization: -31.04 SS G_CDS: 0.47 Total: -30.57 kcal Atomic # 7 Polarization: -38.64 SS G_CDS: 0.49 Total: -38.15 kcal Atomic # 8 Polarization: -43.80 SS G_CDS: -2.15 Total: -45.95 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.48 kcal Atomic # 16 Polarization: 47.01 SS G_CDS: -0.48 Total: 46.53 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -31.80 -8.86 -40.66 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331344135.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.213 kcal (2) G-P(sol) polarization free energy of solvation -31.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds