Wall clock time and date at job start Tue Mar 31 2020 12:18:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.47040 * 2 1 4 4 N 1.46499 * 109.46675 * 119.99788 * 2 1 3 5 5 S 1.65602 * 120.00257 * 264.99917 * 4 2 1 6 6 O 1.42097 * 104.27765 * 181.07655 * 5 4 2 7 7 O 1.42101 * 104.27512 * 308.93186 * 5 4 2 8 8 C 1.81401 * 104.44975 * 65.00222 * 5 4 2 9 9 C 1.52996 * 109.47245 * 180.02562 * 8 5 4 10 10 C 1.53002 * 109.46793 * 300.00278 * 9 8 5 11 11 C 1.53003 * 109.47337 * 59.99758 * 9 8 5 12 12 C 1.50696 * 109.47383 * 180.02562 * 9 8 5 13 13 H 1.08001 * 119.99486 * 359.97438 * 12 9 8 14 14 C 1.37871 * 120.00277 * 179.97438 * 12 9 8 15 15 N 1.31517 * 120.00310 * 359.97438 * 14 12 9 16 16 Si 1.86799 * 120.00202 * 179.97438 * 14 12 9 17 17 H 1.48499 * 109.46981 * 89.99802 * 16 14 12 18 18 H 1.48497 * 109.47272 * 209.99829 * 16 14 12 19 19 H 1.48500 * 109.47182 * 330.00037 * 16 14 12 20 20 C 1.52997 * 109.47082 * 239.99896 * 2 1 3 21 21 C 1.53177 * 109.54370 * 65.00403 * 20 2 1 22 22 C 1.53098 * 109.21356 * 183.18188 * 21 20 2 23 23 O 1.42899 * 109.40993 * 57.57693 * 22 21 20 24 24 C 1.42898 * 114.10053 * 298.83671 * 23 22 21 25 25 C 1.53097 * 109.41405 * 61.16391 * 24 23 22 26 26 H 1.09000 * 109.47010 * 300.00549 * 1 2 3 27 27 H 1.09008 * 109.46807 * 59.99657 * 1 2 3 28 28 H 1.08991 * 109.46972 * 180.02562 * 1 2 3 29 29 H 0.96999 * 120.00186 * 85.00532 * 4 2 1 30 30 H 1.09003 * 109.46814 * 300.00170 * 8 5 4 31 31 H 1.09001 * 109.46716 * 60.00097 * 8 5 4 32 32 H 1.08993 * 109.47524 * 60.00309 * 10 9 8 33 33 H 1.09005 * 109.46673 * 179.97438 * 10 9 8 34 34 H 1.08997 * 109.47140 * 299.99190 * 10 9 8 35 35 H 1.09003 * 109.47009 * 59.99870 * 11 9 8 36 36 H 1.08991 * 109.47307 * 179.97438 * 11 9 8 37 37 H 1.09005 * 109.46999 * 300.00444 * 11 9 8 38 38 H 0.96992 * 120.00581 * 180.02562 * 15 14 12 39 39 H 1.09005 * 109.61074 * 185.22293 * 20 2 1 40 40 H 1.09002 * 109.52487 * 63.24399 * 21 20 2 41 41 H 1.09004 * 109.52023 * 303.12019 * 21 20 2 42 42 H 1.08999 * 109.47354 * 177.55660 * 22 21 20 43 43 H 1.08999 * 109.48099 * 297.59428 * 22 21 20 44 44 H 1.09007 * 109.48578 * 181.14563 * 24 23 22 45 45 H 1.09003 * 109.48319 * 301.17106 * 24 23 22 46 46 H 1.09002 * 109.52138 * 62.29619 * 25 24 23 47 47 H 1.09005 * 109.52063 * 182.42027 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6906 1.1962 5 16 2.4121 0.1772 2.5506 6 8 2.8605 -0.8029 3.4766 7 8 3.2874 1.1906 2.0751 8 6 0.8407 0.8990 3.0985 9 6 1.0752 1.7351 4.3582 10 6 1.6399 0.8423 5.4650 11 6 2.0706 2.8552 4.0489 12 6 -0.2304 2.3342 4.8138 13 1 -1.1367 2.1385 4.2599 14 6 -0.2678 3.1321 5.9375 15 7 0.8357 3.3700 6.6123 16 14 -1.8860 3.8753 6.5018 17 1 -2.5564 2.9440 7.4444 18 1 -1.6256 5.1681 7.1846 19 1 -2.7624 4.1047 5.3252 20 6 2.0400 -0.7213 -1.2492 21 6 1.6357 0.0685 -2.4978 22 6 2.0800 -0.6995 -3.7455 23 8 1.4939 -2.0027 -3.7347 24 6 1.8752 -2.8047 -2.6152 25 6 1.4228 -2.1213 -1.3220 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 2.1109 -1.6561 1.1950 30 1 0.4386 1.5353 2.3101 31 1 0.1315 0.1010 3.3185 32 1 2.5841 0.4087 5.1358 33 1 1.8074 1.4381 6.3623 34 1 0.9308 0.0444 5.6854 35 1 1.6683 3.4912 3.2603 36 1 2.2373 3.4511 4.9461 37 1 3.0148 2.4214 3.7196 38 1 0.8094 3.9310 7.4030 39 1 3.1260 -0.8043 -1.2060 40 1 2.1165 1.0467 -2.4817 41 1 0.5532 0.1950 -2.5141 42 1 1.7562 -0.1626 -4.6372 43 1 3.1663 -0.7893 -3.7495 44 1 1.4040 -3.7846 -2.6925 45 1 2.9588 -2.9223 -2.6044 46 1 0.3358 -2.0400 -1.3141 47 1 1.7503 -2.7100 -0.4651 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331344135.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:18:57 Heat of formation + Delta-G solvation = -157.752981 kcal Electronic energy + Delta-G solvation = -26864.574036 eV Core-core repulsion = 23173.113012 eV Total energy + Delta-G solvation = -3691.461024 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.165 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.65361 -38.19539 -38.13049 -37.71909 -36.88627 -33.72486 -33.63169 -31.97125 -30.19943 -28.37855 -27.69266 -27.24226 -26.27389 -24.53302 -23.05207 -21.37967 -20.38924 -20.23767 -18.88576 -17.88428 -17.54074 -16.96445 -16.92701 -16.73944 -16.57111 -16.08989 -15.64019 -15.61024 -15.05968 -14.72078 -14.57113 -14.43518 -14.33465 -14.12909 -13.82768 -13.29472 -13.15047 -13.04410 -12.96422 -12.88947 -12.78180 -12.68605 -12.48009 -12.36340 -12.17858 -12.13021 -12.06172 -11.87086 -11.79705 -11.55924 -11.45491 -11.37461 -11.00121 -10.70384 -10.52961 -10.41360 -10.22462 -8.02666 -6.21229 -0.59323 1.44189 1.46220 1.54590 1.90593 2.44447 2.86048 3.03617 3.19690 3.31649 3.65801 3.74405 3.81937 4.01634 4.13703 4.15662 4.28146 4.30357 4.36717 4.43695 4.50694 4.59170 4.68476 4.76072 4.85262 4.85671 4.87018 4.88577 4.96315 5.00712 5.02220 5.08006 5.12629 5.19114 5.27262 5.36811 5.40667 5.50893 5.56204 5.65153 5.97430 6.11587 6.15788 6.32460 6.34480 6.83753 7.47199 8.97217 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.023115 B = 0.003435 C = 0.003225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1211.017749 B = 8148.737177 C = 8681.073207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.144 3.856 3 H 0.084 0.916 4 N -1.107 6.107 5 S 2.612 3.388 6 O -0.995 6.995 7 O -0.992 6.992 8 C -0.585 4.585 9 C 0.069 3.931 10 C -0.160 4.160 11 C -0.159 4.159 12 C -0.515 4.515 13 H 0.064 0.936 14 C 0.017 3.983 15 N -0.909 5.909 16 Si 0.954 3.046 17 H -0.279 1.279 18 H -0.288 1.288 19 H -0.266 1.266 20 C -0.090 4.090 21 C -0.153 4.153 22 C 0.059 3.941 23 O -0.402 6.402 24 C 0.058 3.942 25 C -0.155 4.155 26 H 0.058 0.942 27 H 0.087 0.913 28 H 0.079 0.921 29 H 0.421 0.579 30 H 0.137 0.863 31 H 0.137 0.863 32 H 0.031 0.969 33 H 0.070 0.930 34 H 0.039 0.961 35 H 0.040 0.960 36 H 0.070 0.930 37 H 0.032 0.968 38 H 0.261 0.739 39 H 0.074 0.926 40 H 0.083 0.917 41 H 0.083 0.917 42 H 0.106 0.894 43 H 0.053 0.947 44 H 0.104 0.896 45 H 0.052 0.948 46 H 0.084 0.916 47 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.524 -9.733 -19.178 21.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C 0.037 3.963 3 H 0.102 0.898 4 N -0.868 5.868 5 S 2.709 3.291 6 O -0.986 6.986 7 O -0.982 6.982 8 C -0.717 4.717 9 C 0.067 3.933 10 C -0.218 4.218 11 C -0.217 4.217 12 C -0.554 4.554 13 H 0.082 0.918 14 C -0.182 4.182 15 N -0.548 5.548 16 Si 0.780 3.220 17 H -0.205 1.205 18 H -0.214 1.214 19 H -0.190 1.190 20 C -0.110 4.110 21 C -0.191 4.191 22 C -0.018 4.018 23 O -0.322 6.322 24 C -0.019 4.019 25 C -0.193 4.193 26 H 0.077 0.923 27 H 0.105 0.895 28 H 0.098 0.902 29 H 0.258 0.742 30 H 0.156 0.844 31 H 0.155 0.845 32 H 0.049 0.951 33 H 0.089 0.911 34 H 0.059 0.941 35 H 0.060 0.940 36 H 0.088 0.912 37 H 0.050 0.950 38 H 0.070 0.930 39 H 0.092 0.908 40 H 0.102 0.898 41 H 0.102 0.898 42 H 0.124 0.876 43 H 0.071 0.929 44 H 0.122 0.878 45 H 0.071 0.929 46 H 0.102 0.898 47 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 0.306 -9.445 -18.810 21.051 hybrid contribution -0.983 0.389 1.016 1.466 sum -0.677 -9.056 -17.795 19.978 Atomic orbital electron populations 1.22633 0.94182 1.04164 1.03568 1.20987 0.94986 0.96279 0.84051 0.89776 1.55474 1.84225 1.19892 1.27221 1.04735 0.77680 0.73795 0.72881 1.93503 1.81165 1.60302 1.63600 1.93501 1.63439 1.61122 1.80130 1.30550 1.20301 1.11789 1.09064 1.17919 0.95910 0.91160 0.88279 1.22211 0.97944 0.98735 1.02922 1.22197 0.96909 1.00799 1.01782 1.21292 0.93600 1.29774 1.10773 0.91774 1.25676 0.99205 0.96690 0.96643 1.69944 1.27980 1.38462 1.18365 0.85620 0.80297 0.77612 0.78469 1.20473 1.21371 1.19046 1.21396 1.00575 0.95699 0.93318 1.22321 1.03317 0.99637 0.93814 1.22684 0.97422 0.83147 0.98537 1.87901 1.71798 1.26643 1.45827 1.22686 0.99598 0.94587 0.85013 1.22364 1.02524 0.95601 0.98804 0.92312 0.89467 0.90203 0.74238 0.84438 0.84463 0.95057 0.91087 0.94140 0.94035 0.91163 0.94961 0.92974 0.90777 0.89829 0.89815 0.87575 0.92884 0.87774 0.92931 0.89754 0.90085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.26 8.75 71.98 0.63 -2.63 16 2 C 0.14 2.93 2.59 44.99 0.12 3.04 16 3 H 0.08 1.91 7.48 -2.39 -0.02 1.89 16 4 N -1.11 -26.72 5.33 -169.39 -0.90 -27.62 16 5 S 2.61 92.10 4.47 -56.49 -0.25 91.85 16 6 O -1.00 -40.76 15.70 -127.65 -2.00 -42.76 16 7 O -0.99 -40.41 15.01 -127.65 -1.92 -42.33 16 8 C -0.58 -21.44 4.16 71.98 0.30 -21.14 16 9 C 0.07 3.30 0.52 -52.93 -0.03 3.27 16 10 C -0.16 -7.95 7.77 71.98 0.56 -7.39 16 11 C -0.16 -7.83 7.78 71.98 0.56 -7.27 16 12 C -0.52 -26.43 8.01 25.60 0.21 -26.22 16 13 H 0.06 3.14 7.74 -2.91 -0.02 3.12 16 14 C 0.02 0.90 5.15 84.65 0.44 1.34 16 15 N -0.91 -50.16 9.35 21.45 0.20 -49.96 16 16 Si 0.95 41.76 29.54 68.60 2.03 43.79 16 17 H -0.28 -12.04 7.11 99.48 0.71 -11.34 16 18 H -0.29 -12.60 7.11 99.48 0.71 -11.89 16 19 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 20 C -0.09 -1.48 2.25 -10.68 -0.02 -1.50 16 21 C -0.15 -2.14 5.24 30.69 0.16 -1.98 16 22 C 0.06 0.81 6.84 72.01 0.49 1.30 16 23 O -0.40 -7.00 10.76 -148.98 -1.60 -8.60 16 24 C 0.06 0.80 6.84 72.01 0.49 1.29 16 25 C -0.16 -2.17 4.84 30.69 0.15 -2.02 16 26 H 0.06 1.16 5.78 -2.39 -0.01 1.14 16 27 H 0.09 1.24 6.51 -2.38 -0.02 1.22 16 28 H 0.08 1.19 6.28 -2.39 -0.02 1.18 16 29 H 0.42 8.36 7.38 -96.75 -0.71 7.64 16 30 H 0.14 4.45 6.77 -2.39 -0.02 4.44 16 31 H 0.14 4.48 8.14 -2.39 -0.02 4.46 16 32 H 0.03 1.48 5.46 -2.39 -0.01 1.47 16 33 H 0.07 3.85 6.07 -2.38 -0.01 3.84 16 34 H 0.04 1.89 8.14 -2.39 -0.02 1.88 16 35 H 0.04 1.92 8.14 -2.39 -0.02 1.90 16 36 H 0.07 3.79 6.07 -2.39 -0.01 3.78 16 37 H 0.03 1.52 5.46 -2.38 -0.01 1.50 16 38 H 0.26 13.82 8.31 -92.71 -0.77 13.05 16 39 H 0.07 1.32 8.14 -2.38 -0.02 1.30 16 40 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 41 H 0.08 1.11 6.44 -2.38 -0.02 1.10 16 42 H 0.11 1.17 8.14 -2.39 -0.02 1.15 16 43 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 44 H 0.10 1.18 8.14 -2.38 -0.02 1.16 16 45 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 46 H 0.08 1.15 6.18 -2.39 -0.01 1.13 16 47 H 0.08 1.01 6.88 -2.38 -0.02 1.00 16 Total: -1.00 -67.36 354.33 -0.14 -67.50 By element: Atomic # 1 Polarization: 27.79 SS G_CDS: 0.26 Total: 28.05 kcal Atomic # 6 Polarization: -63.96 SS G_CDS: 4.05 Total: -59.91 kcal Atomic # 7 Polarization: -76.88 SS G_CDS: -0.70 Total: -77.59 kcal Atomic # 8 Polarization: -88.17 SS G_CDS: -5.52 Total: -93.69 kcal Atomic # 14 Polarization: 41.76 SS G_CDS: 2.03 Total: 43.79 kcal Atomic # 16 Polarization: 92.10 SS G_CDS: -0.25 Total: 91.85 kcal Total: -67.36 -0.14 -67.50 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331344135.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.252 kcal (2) G-P(sol) polarization free energy of solvation -67.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds