Wall clock time and date at job start Tue Mar 31 2020 13:02:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09003 * 109.46836 * 2 1 4 4 C 1.52995 * 109.46893 * 239.99824 * 2 1 3 5 5 O 1.42899 * 109.47238 * 65.00206 * 4 2 1 6 6 C 1.42905 * 114.00026 * 179.97438 * 5 4 2 7 7 C 1.54259 * 110.03376 * 267.90714 * 6 5 4 8 8 C 1.54966 * 104.15901 * 217.13813 * 7 6 5 9 9 C 1.54890 * 102.77794 * 37.88979 * 8 7 6 10 10 C 1.53880 * 110.02862 * 150.68892 * 6 5 4 11 11 C 1.52996 * 109.47159 * 119.99962 * 2 1 3 12 12 S 1.81402 * 109.46888 * 295.00017 * 11 2 1 13 13 O 1.42098 * 110.54517 * 68.37784 * 12 11 2 14 14 O 1.42095 * 110.54400 * 291.62125 * 12 11 2 15 15 N 1.65609 * 104.44875 * 179.97438 * 12 11 2 16 16 C 1.46500 * 119.99795 * 65.00252 * 15 12 11 17 17 H 1.09002 * 109.47129 * 334.99717 * 16 15 12 18 18 C 1.52997 * 109.47473 * 94.99975 * 16 15 12 19 19 C 1.50708 * 109.47008 * 215.00143 * 16 15 12 20 20 H 1.08000 * 119.99723 * 359.97438 * 19 16 15 21 21 C 1.37873 * 119.99930 * 179.97438 * 19 16 15 22 22 N 1.31509 * 120.00195 * 0.02562 * 21 19 16 23 23 Si 1.86803 * 119.99968 * 179.97438 * 21 19 16 24 24 H 1.48498 * 109.46680 * 60.00159 * 23 21 19 25 25 H 1.48492 * 109.47298 * 180.02562 * 23 21 19 26 26 H 1.48506 * 109.46944 * 300.00675 * 23 21 19 27 27 H 1.08996 * 109.46500 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.46559 * 299.99813 * 1 2 3 29 29 H 1.08994 * 109.46862 * 59.99940 * 1 2 3 30 30 H 1.09012 * 109.47031 * 184.99669 * 4 2 1 31 31 H 1.08997 * 109.47291 * 304.99953 * 4 2 1 32 32 H 1.08996 * 110.01259 * 29.30405 * 6 5 4 33 33 H 1.09006 * 110.48705 * 335.78307 * 7 6 5 34 34 H 1.08996 * 110.49127 * 98.42866 * 7 6 5 35 35 H 1.09006 * 110.72210 * 279.57253 * 8 7 6 36 36 H 1.09004 * 110.92491 * 156.29464 * 8 7 6 37 37 H 1.08999 * 110.48520 * 203.40636 * 9 8 7 38 38 H 1.08997 * 110.59958 * 80.81792 * 9 8 7 39 39 H 1.09004 * 110.03080 * 238.56882 * 10 6 5 40 40 H 1.09000 * 110.03516 * 359.95132 * 10 6 5 41 41 H 1.08998 * 109.47230 * 174.99924 * 11 2 1 42 42 H 1.08998 * 109.47638 * 54.99720 * 11 2 1 43 43 H 0.96993 * 120.00220 * 245.00214 * 15 12 11 44 44 H 1.09002 * 109.47153 * 59.99757 * 18 16 15 45 45 H 1.09001 * 109.46832 * 299.99948 * 18 16 15 46 46 H 1.09004 * 109.47261 * 179.97438 * 18 16 15 47 47 H 0.97006 * 120.00358 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 1.6620 0.0167 -2.4130 6 6 2.0924 -0.5740 -3.6410 7 6 3.4663 -0.0035 -4.0489 8 6 3.3865 0.1103 -5.5923 9 6 1.9245 0.5647 -5.8271 10 6 1.1124 -0.2133 -4.7713 11 6 2.0401 -0.7212 1.2492 12 16 1.5601 0.2157 2.7265 13 8 0.1521 0.1683 2.9115 14 8 2.2660 1.4475 2.7870 15 7 2.1672 -0.6659 3.9902 16 6 3.6156 -0.8211 4.1461 17 1 4.1001 -0.7029 3.1768 18 6 4.1415 0.2423 5.1122 19 6 3.9178 -2.1918 4.6948 20 1 3.1115 -2.8784 4.9066 21 6 5.2235 -2.5692 4.9263 22 7 6.2052 -1.7329 4.6688 23 14 5.5980 -4.2680 5.6071 24 1 5.0869 -5.3004 4.6701 25 1 7.0661 -4.4254 5.7650 26 1 4.9384 -4.4283 6.9280 27 1 -0.3632 -1.0277 0.0005 28 1 -0.3632 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 3.1264 -0.7995 -1.2056 31 1 1.6054 -1.7198 -1.2951 32 1 2.1548 -1.6567 -3.5324 33 1 3.6197 0.9786 -3.6015 34 1 4.2647 -0.6857 -3.7567 35 1 3.5705 -0.8568 -6.0604 36 1 4.0877 0.8574 -5.9643 37 1 1.5987 0.2971 -6.8323 38 1 1.8266 1.6386 -5.6686 39 1 0.7000 -1.1211 -5.2118 40 1 0.3081 0.4116 -4.3829 41 1 3.1264 -0.7995 1.2056 42 1 1.6055 -1.7198 1.2952 43 1 1.5638 -1.0795 4.6272 44 1 3.6570 0.1241 6.0815 45 1 3.9230 1.2337 4.7153 46 1 5.2191 0.1265 5.2285 47 1 7.1239 -1.9983 4.8321 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000338883443.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:02:42 Heat of formation + Delta-G solvation = -149.441578 kcal Electronic energy + Delta-G solvation = -25660.678978 eV Core-core repulsion = 21969.578363 eV Total energy + Delta-G solvation = -3691.100615 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.165 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -39.26179 -36.95356 -36.57844 -35.52268 -35.33390 -34.64360 -32.23277 -29.00329 -28.30419 -28.20542 -27.32908 -25.95321 -25.24430 -21.00652 -20.97685 -20.83213 -20.37698 -18.68876 -17.56067 -17.21540 -16.44538 -15.95439 -15.83344 -15.62453 -15.33460 -14.91803 -14.60242 -14.15305 -13.73290 -13.59889 -13.47411 -13.24809 -12.67382 -12.63192 -12.23659 -12.10373 -11.78143 -11.72097 -11.66894 -11.46813 -11.40441 -11.35591 -11.34241 -11.17728 -11.09763 -10.98738 -10.94907 -10.87488 -10.69167 -10.60217 -10.30889 -10.22344 -10.05993 -9.59644 -9.19691 -8.65715 -8.29735 -6.18357 -4.27621 0.83773 3.21491 3.27405 3.28145 3.36687 3.58712 4.24868 4.31390 4.33422 4.34172 4.57252 4.65701 4.70248 4.90670 4.95414 5.02125 5.12811 5.19006 5.22971 5.33298 5.36927 5.41458 5.45436 5.54382 5.61553 5.63460 5.69749 5.76692 5.81171 5.87738 5.94935 5.96130 6.05889 6.15987 6.27224 6.34530 6.81315 7.06571 7.09575 7.16358 7.54736 7.68576 7.80222 8.00758 8.24506 8.76451 9.39486 10.86938 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.013972 B = 0.003152 C = 0.002776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2003.588040 B = 8881.131086 C =10084.845141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.075 4.075 3 H 0.091 0.909 4 C 0.074 3.926 5 O -0.378 6.378 6 C 0.084 3.916 7 C -0.150 4.150 8 C -0.124 4.124 9 C -0.123 4.123 10 C -0.124 4.124 11 C -0.632 4.632 12 S 2.613 3.387 13 O -0.977 6.977 14 O -0.960 6.960 15 N -1.104 6.104 16 C 0.273 3.727 17 H 0.038 0.962 18 C -0.158 4.158 19 C -0.530 4.530 20 H 0.064 0.936 21 C 0.065 3.935 22 N -0.886 5.886 23 Si 0.900 3.100 24 H -0.277 1.277 25 H -0.286 1.286 26 H -0.276 1.276 27 H 0.062 0.938 28 H 0.074 0.926 29 H 0.072 0.928 30 H 0.054 0.946 31 H 0.053 0.947 32 H 0.062 0.938 33 H 0.079 0.921 34 H 0.067 0.933 35 H 0.066 0.934 36 H 0.068 0.932 37 H 0.065 0.935 38 H 0.068 0.932 39 H 0.070 0.930 40 H 0.078 0.922 41 H 0.137 0.863 42 H 0.133 0.867 43 H 0.409 0.591 44 H 0.031 0.969 45 H 0.027 0.973 46 H 0.090 0.910 47 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.022 1.044 -17.327 18.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.095 4.095 3 H 0.109 0.891 4 C -0.003 4.003 5 O -0.298 6.298 6 C 0.026 3.974 7 C -0.188 4.188 8 C -0.161 4.161 9 C -0.161 4.161 10 C -0.161 4.161 11 C -0.760 4.760 12 S 2.704 3.296 13 O -0.967 6.967 14 O -0.950 6.950 15 N -0.864 5.864 16 C 0.169 3.831 17 H 0.055 0.945 18 C -0.218 4.218 19 C -0.569 4.569 20 H 0.082 0.918 21 C -0.139 4.139 22 N -0.524 5.524 23 Si 0.728 3.272 24 H -0.202 1.202 25 H -0.212 1.212 26 H -0.201 1.201 27 H 0.082 0.918 28 H 0.093 0.907 29 H 0.091 0.909 30 H 0.073 0.927 31 H 0.071 0.929 32 H 0.080 0.920 33 H 0.098 0.902 34 H 0.086 0.914 35 H 0.085 0.915 36 H 0.087 0.913 37 H 0.084 0.916 38 H 0.087 0.913 39 H 0.088 0.912 40 H 0.097 0.903 41 H 0.155 0.845 42 H 0.151 0.849 43 H 0.242 0.758 44 H 0.051 0.949 45 H 0.046 0.954 46 H 0.109 0.891 47 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -7.261 2.118 -17.375 18.950 hybrid contribution 0.703 -2.111 0.382 2.258 sum -6.558 0.007 -16.993 18.214 Atomic orbital electron populations 1.22226 0.93527 1.03392 1.03950 1.20750 0.97126 1.00132 0.91490 0.89116 1.22535 0.98908 0.94416 0.84474 1.87924 1.78281 1.50270 1.13303 1.22786 0.93489 0.96548 0.84611 1.22941 0.97179 1.02460 0.96189 1.22443 0.96817 1.01319 0.95537 1.22332 0.95019 1.00306 0.98406 1.22229 0.98438 1.00807 0.94659 1.30730 1.12809 1.15089 1.17337 1.04713 0.73598 0.75526 0.75774 1.93516 1.30747 1.87521 1.84966 1.93582 1.74648 1.41077 1.85698 1.55599 1.17309 1.72150 1.41356 1.18512 0.72917 0.95488 0.96167 0.94466 1.22227 1.04292 0.96526 0.98728 1.21288 0.92577 0.98561 1.44506 0.91777 1.24933 0.96115 0.97632 0.95173 1.69871 0.99678 1.35151 1.47687 0.86530 0.77237 0.83849 0.79617 1.20208 1.21157 1.20108 0.91843 0.90675 0.90884 0.92745 0.92878 0.91973 0.90227 0.91442 0.91516 0.91338 0.91611 0.91327 0.91176 0.90284 0.84460 0.84866 0.75800 0.94944 0.95387 0.89125 0.92445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.28 8.78 37.16 0.33 -1.96 16 2 C -0.08 -1.03 2.62 -90.62 -0.24 -1.26 16 3 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 4 C 0.07 0.91 5.16 37.15 0.19 1.10 16 5 O -0.38 -4.65 9.43 -35.23 -0.33 -4.99 16 6 C 0.08 0.83 3.38 -25.61 -0.09 0.75 16 7 C -0.15 -1.40 6.56 -25.03 -0.16 -1.56 16 8 C -0.12 -0.94 6.91 -24.70 -0.17 -1.11 16 9 C -0.12 -0.92 6.83 -25.07 -0.17 -1.09 16 10 C -0.12 -1.05 6.61 -25.61 -0.17 -1.22 16 11 C -0.63 -9.28 5.40 37.16 0.20 -9.07 16 12 S 2.61 47.19 5.03 -107.50 -0.54 46.65 16 13 O -0.98 -18.51 15.82 -57.54 -0.91 -19.43 16 14 O -0.96 -20.42 17.11 -57.54 -0.98 -21.40 16 15 N -1.10 -21.89 5.35 -5.88 -0.03 -21.92 16 16 C 0.27 6.44 2.66 -69.08 -0.18 6.26 16 17 H 0.04 0.90 7.15 -51.93 -0.37 0.53 16 18 C -0.16 -3.83 9.29 37.16 0.35 -3.48 16 19 C -0.53 -13.38 8.76 -34.44 -0.30 -13.68 16 20 H 0.06 1.56 7.81 -52.49 -0.41 1.15 16 21 C 0.06 1.67 5.30 -17.82 -0.09 1.57 16 22 N -0.89 -23.75 11.32 55.43 0.63 -23.13 16 23 Si 0.90 19.99 29.54 -169.99 -5.02 14.97 16 24 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 25 H -0.29 -6.35 7.11 56.52 0.40 -5.95 16 26 H -0.28 -6.11 7.11 56.52 0.40 -5.70 16 27 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 28 H 0.07 1.08 5.61 -51.93 -0.29 0.79 16 29 H 0.07 0.88 7.82 -51.93 -0.41 0.47 16 30 H 0.05 0.65 8.14 -51.92 -0.42 0.23 16 31 H 0.05 0.59 8.10 -51.93 -0.42 0.17 16 32 H 0.06 0.58 7.81 -51.93 -0.41 0.17 16 33 H 0.08 0.83 8.08 -51.93 -0.42 0.41 16 34 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 36 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.08 0.73 7.95 -51.93 -0.41 0.31 16 41 H 0.14 2.02 7.44 -51.92 -0.39 1.63 16 42 H 0.13 1.72 8.14 -51.92 -0.42 1.29 16 43 H 0.41 7.50 8.79 -34.48 -0.30 7.20 16 44 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 45 H 0.03 0.65 7.43 -51.93 -0.39 0.26 16 46 H 0.09 2.35 6.07 -51.93 -0.32 2.03 16 47 H 0.27 6.80 8.31 -40.82 -0.34 6.46 16 LS Contribution 381.14 15.07 5.74 5.74 Total: -1.00 -30.22 381.14 -10.28 -40.50 By element: Atomic # 1 Polarization: 16.07 SS G_CDS: -8.31 Total: 7.76 kcal Atomic # 6 Polarization: -24.24 SS G_CDS: -0.52 Total: -24.76 kcal Atomic # 7 Polarization: -45.64 SS G_CDS: 0.60 Total: -45.05 kcal Atomic # 8 Polarization: -43.58 SS G_CDS: -2.23 Total: -45.81 kcal Atomic # 14 Polarization: 19.99 SS G_CDS: -5.02 Total: 14.97 kcal Atomic # 16 Polarization: 47.19 SS G_CDS: -0.54 Total: 46.65 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -30.22 -10.28 -40.50 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338883443.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.938 kcal (2) G-P(sol) polarization free energy of solvation -30.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds