Wall clock time and date at job start Tue Mar 31 2020 13:02:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08996 * 109.47182 * 2 1 4 4 C 1.53010 * 109.47258 * 240.00108 * 2 1 3 5 5 O 1.42900 * 109.46609 * 64.99832 * 4 2 1 6 6 C 1.42898 * 113.99659 * 179.97438 * 5 4 2 7 7 C 1.54269 * 110.03590 * 267.91371 * 6 5 4 8 8 C 1.54970 * 104.15986 * 217.13989 * 7 6 5 9 9 C 1.54889 * 102.77997 * 37.88164 * 8 7 6 10 10 C 1.53871 * 110.03352 * 150.69151 * 6 5 4 11 11 C 1.52998 * 109.47371 * 120.00369 * 2 1 3 12 12 S 1.81401 * 109.46866 * 295.00001 * 11 2 1 13 13 O 1.42102 * 110.54326 * 68.37579 * 12 11 2 14 14 O 1.42097 * 110.54474 * 291.62182 * 12 11 2 15 15 N 1.65608 * 104.44945 * 179.97438 * 12 11 2 16 16 C 1.46495 * 119.99695 * 64.99881 * 15 12 11 17 17 C 1.53002 * 109.46973 * 165.00079 * 16 15 12 18 18 C 1.50710 * 109.47156 * 180.02562 * 17 16 15 19 19 H 1.08001 * 119.99800 * 359.97438 * 18 17 16 20 20 C 1.37874 * 119.99609 * 179.97438 * 18 17 16 21 21 N 1.31510 * 120.00470 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 119.99433 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.47436 * 359.97438 * 22 20 18 24 24 H 1.48495 * 109.47321 * 119.99992 * 22 20 18 25 25 H 1.48507 * 109.47067 * 239.99754 * 22 20 18 26 26 H 1.09003 * 109.47293 * 59.99919 * 1 2 3 27 27 H 1.09004 * 109.47056 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47248 * 299.99928 * 1 2 3 29 29 H 1.08995 * 109.46973 * 185.00006 * 4 2 1 30 30 H 1.08998 * 109.46582 * 305.00389 * 4 2 1 31 31 H 1.09003 * 110.01742 * 29.29712 * 6 5 4 32 32 H 1.09007 * 110.48228 * 335.77826 * 7 6 5 33 33 H 1.08996 * 110.48722 * 98.42436 * 7 6 5 34 34 H 1.09002 * 110.71262 * 279.57106 * 8 7 6 35 35 H 1.08998 * 110.92264 * 156.29174 * 8 7 6 36 36 H 1.08996 * 110.48761 * 203.41024 * 9 8 7 37 37 H 1.08994 * 110.59566 * 80.81958 * 9 8 7 38 38 H 1.08995 * 110.03327 * 238.56941 * 10 6 5 39 39 H 1.09004 * 110.03213 * 359.95452 * 10 6 5 40 40 H 1.08996 * 109.47800 * 174.99892 * 11 2 1 41 41 H 1.09006 * 109.47089 * 54.99557 * 11 2 1 42 42 H 0.96999 * 120.00176 * 245.00119 * 15 12 11 43 43 H 1.09000 * 109.47742 * 285.00040 * 16 15 12 44 44 H 1.09003 * 109.47545 * 44.99964 * 16 15 12 45 45 H 1.09005 * 109.46801 * 299.99766 * 17 16 15 46 46 H 1.08997 * 109.47093 * 60.00035 * 17 16 15 47 47 H 0.97001 * 120.00070 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2493 5 8 1.6619 0.0168 -2.4131 6 6 2.0923 -0.5737 -3.6411 7 6 3.4664 -0.0032 -4.0488 8 6 3.3866 0.1108 -5.5923 9 6 1.9246 0.5651 -5.8272 10 6 1.1124 -0.2131 -4.7713 11 6 2.0400 -0.7213 1.2492 12 16 1.5601 0.2155 2.7266 13 8 0.1520 0.1681 2.9115 14 8 2.2659 1.4473 2.7870 15 7 2.1672 -0.6661 3.9902 16 6 3.6155 -0.8214 4.1459 17 6 3.9247 -1.3383 5.5524 18 6 5.4148 -1.4974 5.7128 19 1 6.0751 -1.2545 4.8935 20 6 5.9349 -1.9530 6.9057 21 7 5.1308 -2.2483 7.9036 22 14 7.7818 -2.1495 7.1048 23 1 8.4605 -1.7530 5.8448 24 1 8.2548 -1.2849 8.2156 25 1 8.0985 -3.5676 7.4120 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 3.1263 -0.7995 -1.2056 30 1 1.6053 -1.7198 -1.2952 31 1 2.1550 -1.6565 -3.5326 32 1 3.6197 0.9789 -3.6014 33 1 4.2646 -0.6855 -3.7566 34 1 3.5706 -0.8563 -6.0603 35 1 4.0878 0.8579 -5.9641 36 1 1.5988 0.2975 -6.8323 37 1 1.8266 1.6389 -5.6685 38 1 0.7002 -1.1208 -5.2119 39 1 0.3081 0.4118 -4.3829 40 1 3.1263 -0.7996 1.2056 41 1 1.6053 -1.7199 1.2951 42 1 1.5638 -1.0798 4.6271 43 1 3.9863 -1.5326 3.4078 44 1 4.1024 0.1426 3.9980 45 1 3.5541 -0.6270 6.2905 46 1 3.4380 -2.3023 5.7003 47 1 5.4967 -2.5692 8.7427 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000338950896.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:02:36 Heat of formation + Delta-G solvation = -154.531043 kcal Electronic energy + Delta-G solvation = -24900.852641 eV Core-core repulsion = 21209.531330 eV Total energy + Delta-G solvation = -3691.321311 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.165 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.42020 -37.15056 -36.88643 -35.77463 -35.40033 -34.85938 -32.76712 -29.16732 -29.12321 -28.38244 -27.60065 -26.16298 -24.51149 -21.23502 -21.12290 -21.00530 -20.53578 -19.07445 -17.70111 -17.26405 -16.41645 -16.32059 -16.08152 -15.89398 -15.54403 -15.04585 -14.58520 -14.48881 -14.08812 -13.80665 -13.72628 -13.67884 -13.43144 -12.90920 -12.57741 -12.28854 -12.00383 -11.92981 -11.84065 -11.75296 -11.55346 -11.51248 -11.47041 -11.37324 -11.29415 -11.16694 -11.13374 -10.99426 -10.84988 -10.62122 -10.60750 -10.34920 -9.76882 -9.61221 -9.28320 -8.91422 -8.43984 -6.10661 -4.14368 0.44056 2.98679 3.26203 3.32634 3.34549 3.37959 3.95696 4.19394 4.21303 4.24729 4.38223 4.41695 4.53355 4.61965 4.72694 4.87684 5.05291 5.07027 5.11280 5.14210 5.25928 5.26180 5.27997 5.35908 5.40889 5.49028 5.51942 5.54801 5.65276 5.71886 5.73550 5.74831 5.83284 5.92280 5.94673 6.12742 6.14070 6.43096 6.69331 6.99270 7.40471 7.53326 7.62793 7.87864 8.25080 8.91759 9.50480 11.00729 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.015579 B = 0.002474 C = 0.002197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1796.829107 B =11313.862144 C =12739.001383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.076 4.076 3 H 0.093 0.907 4 C 0.074 3.926 5 O -0.378 6.378 6 C 0.084 3.916 7 C -0.150 4.150 8 C -0.124 4.124 9 C -0.123 4.123 10 C -0.124 4.124 11 C -0.633 4.633 12 S 2.614 3.386 13 O -0.965 6.965 14 O -0.956 6.956 15 N -1.114 6.114 16 C 0.115 3.885 17 C 0.017 3.983 18 C -0.525 4.525 19 H 0.060 0.940 20 C 0.058 3.942 21 N -0.892 5.892 22 Si 0.896 3.104 23 H -0.272 1.272 24 H -0.283 1.283 25 H -0.284 1.284 26 H 0.074 0.926 27 H 0.064 0.936 28 H 0.075 0.925 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.062 0.938 32 H 0.079 0.921 33 H 0.066 0.934 34 H 0.067 0.933 35 H 0.068 0.932 36 H 0.066 0.934 37 H 0.068 0.932 38 H 0.070 0.930 39 H 0.079 0.921 40 H 0.135 0.865 41 H 0.135 0.865 42 H 0.416 0.584 43 H 0.051 0.949 44 H 0.069 0.931 45 H 0.027 0.973 46 H 0.024 0.976 47 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.649 1.457 -25.317 26.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.096 4.096 3 H 0.111 0.889 4 C -0.003 4.003 5 O -0.297 6.297 6 C 0.026 3.974 7 C -0.187 4.187 8 C -0.161 4.161 9 C -0.161 4.161 10 C -0.162 4.162 11 C -0.761 4.761 12 S 2.705 3.295 13 O -0.955 6.955 14 O -0.946 6.946 15 N -0.875 5.875 16 C -0.010 4.010 17 C -0.022 4.022 18 C -0.564 4.564 19 H 0.078 0.922 20 C -0.144 4.144 21 N -0.531 5.531 22 Si 0.724 3.276 23 H -0.196 1.196 24 H -0.209 1.209 25 H -0.210 1.210 26 H 0.093 0.907 27 H 0.083 0.917 28 H 0.094 0.906 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.081 0.919 32 H 0.098 0.902 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.087 0.913 36 H 0.085 0.915 37 H 0.087 0.913 38 H 0.089 0.911 39 H 0.097 0.903 40 H 0.154 0.846 41 H 0.153 0.847 42 H 0.251 0.749 43 H 0.069 0.931 44 H 0.087 0.913 45 H 0.045 0.955 46 H 0.042 0.958 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -8.103 2.452 -25.192 26.577 hybrid contribution 1.378 -1.345 0.244 1.941 sum -6.725 1.108 -24.948 25.863 Atomic orbital electron populations 1.22235 0.93277 1.03534 1.04183 1.20755 0.97368 1.00185 0.91271 0.88921 1.22515 0.98777 0.94458 0.84588 1.87932 1.78274 1.50206 1.13295 1.22802 0.93564 0.96521 0.84517 1.22942 0.97082 1.02401 0.96322 1.22444 0.96869 1.01389 0.95440 1.22335 0.94968 1.00326 0.98468 1.22230 0.98425 1.00875 0.94625 1.30736 1.12484 1.15272 1.17632 1.04788 0.73897 0.75289 0.75508 1.93559 1.30069 1.87139 1.84712 1.93599 1.74747 1.40671 1.85602 1.55550 1.16414 1.72961 1.42615 1.21671 0.76207 1.00632 1.02531 1.19289 0.97104 0.96809 0.88978 1.21126 0.91624 1.44664 0.98952 0.92210 1.25014 0.98225 0.95264 0.95865 1.69966 1.34669 1.44675 1.03743 0.86474 0.85200 0.77710 0.78233 1.19633 1.20902 1.20991 0.90667 0.91735 0.90617 0.92825 0.92830 0.91946 0.90239 0.91480 0.91474 0.91285 0.91532 0.91296 0.91111 0.90254 0.84649 0.84677 0.74927 0.93097 0.91291 0.95515 0.95776 0.92853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.90 8.78 37.15 0.33 -1.57 16 2 C -0.08 -0.82 2.62 -90.62 -0.24 -1.06 16 3 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 4 C 0.07 0.71 5.16 37.16 0.19 0.91 16 5 O -0.38 -3.90 9.43 -35.23 -0.33 -4.23 16 6 C 0.08 0.69 3.38 -25.61 -0.09 0.61 16 7 C -0.15 -1.15 6.57 -25.03 -0.16 -1.31 16 8 C -0.12 -0.78 6.91 -24.70 -0.17 -0.95 16 9 C -0.12 -0.78 6.83 -25.07 -0.17 -0.95 16 10 C -0.12 -0.88 6.61 -25.61 -0.17 -1.05 16 11 C -0.63 -6.83 5.51 37.16 0.20 -6.63 16 12 S 2.61 38.67 5.11 -107.50 -0.55 38.12 16 13 O -0.96 -15.80 15.82 -57.54 -0.91 -16.71 16 14 O -0.96 -17.57 17.50 -57.54 -1.01 -18.58 16 15 N -1.11 -18.08 5.89 -10.61 -0.06 -18.14 16 16 C 0.11 2.18 6.07 -4.04 -0.02 2.16 16 17 C 0.02 0.41 5.12 -27.88 -0.14 0.27 16 18 C -0.52 -14.13 9.11 -34.44 -0.31 -14.44 16 19 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 20 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 21 N -0.89 -25.94 13.29 55.43 0.74 -25.20 16 22 Si 0.90 20.96 29.54 -169.99 -5.02 15.94 16 23 H -0.27 -6.19 7.11 56.52 0.40 -5.78 16 24 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 25 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 26 H 0.07 0.76 7.82 -51.93 -0.41 0.36 16 27 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.08 0.92 5.61 -51.93 -0.29 0.63 16 29 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.05 0.46 8.10 -51.93 -0.42 0.04 16 31 H 0.06 0.47 7.81 -51.93 -0.41 0.06 16 32 H 0.08 0.69 8.08 -51.92 -0.42 0.27 16 33 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 35 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 37 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 39 H 0.08 0.63 7.96 -51.93 -0.41 0.21 16 40 H 0.14 1.30 8.14 -51.93 -0.42 0.88 16 41 H 0.13 1.19 8.14 -51.92 -0.42 0.76 16 42 H 0.42 6.41 8.62 -34.48 -0.30 6.11 16 43 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 44 H 0.07 1.35 7.70 -51.93 -0.40 0.95 16 45 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 46 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 47 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 LS Contribution 387.74 15.07 5.84 5.84 Total: -1.00 -33.01 387.74 -10.67 -43.68 By element: Atomic # 1 Polarization: 10.29 SS G_CDS: -8.51 Total: 1.78 kcal Atomic # 6 Polarization: -21.66 SS G_CDS: -0.86 Total: -22.51 kcal Atomic # 7 Polarization: -44.01 SS G_CDS: 0.67 Total: -43.34 kcal Atomic # 8 Polarization: -37.27 SS G_CDS: -2.25 Total: -39.52 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Atomic # 16 Polarization: 38.67 SS G_CDS: -0.55 Total: 38.12 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -33.01 -10.67 -43.68 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338950896.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.848 kcal (2) G-P(sol) polarization free energy of solvation -33.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.683 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds