Wall clock time and date at job start Tue Mar 31 2020 13:02:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08996 * 109.47182 * 2 1 4 4 C 1.53010 * 109.47258 * 240.00108 * 2 1 3 5 5 O 1.42900 * 109.46609 * 64.99832 * 4 2 1 6 6 C 1.42898 * 113.99659 * 179.97438 * 5 4 2 7 7 C 1.54269 * 110.03590 * 267.91371 * 6 5 4 8 8 C 1.54970 * 104.15986 * 217.13989 * 7 6 5 9 9 C 1.54889 * 102.77997 * 37.88164 * 8 7 6 10 10 C 1.53871 * 110.03352 * 150.69151 * 6 5 4 11 11 C 1.52998 * 109.47371 * 120.00369 * 2 1 3 12 12 S 1.81401 * 109.46866 * 295.00001 * 11 2 1 13 13 O 1.42102 * 110.54326 * 68.37579 * 12 11 2 14 14 O 1.42097 * 110.54474 * 291.62182 * 12 11 2 15 15 N 1.65608 * 104.44945 * 179.97438 * 12 11 2 16 16 C 1.46495 * 119.99695 * 64.99881 * 15 12 11 17 17 C 1.53002 * 109.46973 * 165.00079 * 16 15 12 18 18 C 1.50710 * 109.47156 * 180.02562 * 17 16 15 19 19 H 1.08001 * 119.99800 * 359.97438 * 18 17 16 20 20 C 1.37874 * 119.99609 * 179.97438 * 18 17 16 21 21 N 1.31510 * 120.00470 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 119.99433 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.47436 * 359.97438 * 22 20 18 24 24 H 1.48495 * 109.47321 * 119.99992 * 22 20 18 25 25 H 1.48507 * 109.47067 * 239.99754 * 22 20 18 26 26 H 1.09003 * 109.47293 * 59.99919 * 1 2 3 27 27 H 1.09004 * 109.47056 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47248 * 299.99928 * 1 2 3 29 29 H 1.08995 * 109.46973 * 185.00006 * 4 2 1 30 30 H 1.08998 * 109.46582 * 305.00389 * 4 2 1 31 31 H 1.09003 * 110.01742 * 29.29712 * 6 5 4 32 32 H 1.09007 * 110.48228 * 335.77826 * 7 6 5 33 33 H 1.08996 * 110.48722 * 98.42436 * 7 6 5 34 34 H 1.09002 * 110.71262 * 279.57106 * 8 7 6 35 35 H 1.08998 * 110.92264 * 156.29174 * 8 7 6 36 36 H 1.08996 * 110.48761 * 203.41024 * 9 8 7 37 37 H 1.08994 * 110.59566 * 80.81958 * 9 8 7 38 38 H 1.08995 * 110.03327 * 238.56941 * 10 6 5 39 39 H 1.09004 * 110.03213 * 359.95452 * 10 6 5 40 40 H 1.08996 * 109.47800 * 174.99892 * 11 2 1 41 41 H 1.09006 * 109.47089 * 54.99557 * 11 2 1 42 42 H 0.96999 * 120.00176 * 245.00119 * 15 12 11 43 43 H 1.09000 * 109.47742 * 285.00040 * 16 15 12 44 44 H 1.09003 * 109.47545 * 44.99964 * 16 15 12 45 45 H 1.09005 * 109.46801 * 299.99766 * 17 16 15 46 46 H 1.08997 * 109.47093 * 60.00035 * 17 16 15 47 47 H 0.97001 * 120.00070 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2493 5 8 1.6619 0.0168 -2.4131 6 6 2.0923 -0.5737 -3.6411 7 6 3.4664 -0.0032 -4.0488 8 6 3.3866 0.1108 -5.5923 9 6 1.9246 0.5651 -5.8272 10 6 1.1124 -0.2131 -4.7713 11 6 2.0400 -0.7213 1.2492 12 16 1.5601 0.2155 2.7266 13 8 0.1520 0.1681 2.9115 14 8 2.2659 1.4473 2.7870 15 7 2.1672 -0.6661 3.9902 16 6 3.6155 -0.8214 4.1459 17 6 3.9247 -1.3383 5.5524 18 6 5.4148 -1.4974 5.7128 19 1 6.0751 -1.2545 4.8935 20 6 5.9349 -1.9530 6.9057 21 7 5.1308 -2.2483 7.9036 22 14 7.7818 -2.1495 7.1048 23 1 8.4605 -1.7530 5.8448 24 1 8.2548 -1.2849 8.2156 25 1 8.0985 -3.5676 7.4120 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 3.1263 -0.7995 -1.2056 30 1 1.6053 -1.7198 -1.2952 31 1 2.1550 -1.6565 -3.5326 32 1 3.6197 0.9789 -3.6014 33 1 4.2646 -0.6855 -3.7566 34 1 3.5706 -0.8563 -6.0603 35 1 4.0878 0.8579 -5.9641 36 1 1.5988 0.2975 -6.8323 37 1 1.8266 1.6389 -5.6685 38 1 0.7002 -1.1208 -5.2119 39 1 0.3081 0.4118 -4.3829 40 1 3.1263 -0.7996 1.2056 41 1 1.6053 -1.7199 1.2951 42 1 1.5638 -1.0798 4.6271 43 1 3.9863 -1.5326 3.4078 44 1 4.1024 0.1426 3.9980 45 1 3.5541 -0.6270 6.2905 46 1 3.4380 -2.3023 5.7003 47 1 5.4967 -2.5692 8.7427 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000338950896.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:02:35 Heat of formation + Delta-G solvation = -176.917355 kcal Electronic energy + Delta-G solvation = -24901.823384 eV Core-core repulsion = 21209.531330 eV Total energy + Delta-G solvation = -3692.292054 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.165 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.05717 -38.22433 -37.80213 -37.08483 -36.92426 -35.62586 -34.71525 -30.98807 -29.65426 -29.03828 -28.44227 -26.89319 -26.39436 -22.97288 -21.85349 -21.63442 -21.17802 -20.28369 -18.94130 -18.26852 -18.10536 -17.41356 -17.00875 -16.69101 -16.55099 -16.41586 -15.83494 -15.57679 -15.39294 -15.04892 -14.58011 -14.40879 -14.23690 -14.17877 -13.78837 -13.33778 -13.24963 -13.20383 -13.11979 -12.97534 -12.79970 -12.57480 -12.46074 -12.42324 -12.36514 -12.25716 -12.01436 -11.99971 -11.89179 -11.53455 -11.48911 -11.44941 -11.38000 -11.24471 -10.60810 -10.42364 -10.23477 -8.20225 -6.30980 -0.72911 1.43272 1.44710 1.57041 1.77716 2.43058 2.56371 2.89418 3.14896 3.22911 3.52969 3.65077 3.66837 3.71611 3.89522 4.06871 4.20467 4.22238 4.32684 4.36683 4.53369 4.54439 4.57254 4.58769 4.61730 4.71195 4.80123 4.80471 4.86840 4.87707 4.95980 5.01339 5.02366 5.07133 5.19008 5.22910 5.29815 5.30332 5.45302 5.51320 5.64673 5.82352 6.05515 6.24129 6.34975 6.85777 7.38585 8.92047 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.015579 B = 0.002474 C = 0.002197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1796.829107 B =11313.862144 C =12739.001383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.082 4.082 3 H 0.083 0.917 4 C 0.074 3.926 5 O -0.396 6.396 6 C 0.077 3.923 7 C -0.151 4.151 8 C -0.121 4.121 9 C -0.123 4.123 10 C -0.125 4.125 11 C -0.606 4.606 12 S 2.615 3.385 13 O -0.984 6.984 14 O -0.999 6.999 15 N -1.118 6.118 16 C 0.126 3.874 17 C 0.017 3.983 18 C -0.541 4.541 19 H 0.071 0.929 20 C -0.001 4.001 21 N -0.932 5.932 22 Si 0.966 3.034 23 H -0.258 1.258 24 H -0.284 1.284 25 H -0.278 1.278 26 H 0.077 0.923 27 H 0.078 0.922 28 H 0.057 0.943 29 H 0.062 0.938 30 H 0.070 0.930 31 H 0.074 0.926 32 H 0.063 0.937 33 H 0.072 0.928 34 H 0.077 0.923 35 H 0.072 0.928 36 H 0.079 0.921 37 H 0.060 0.940 38 H 0.084 0.916 39 H 0.067 0.933 40 H 0.157 0.843 41 H 0.166 0.834 42 H 0.418 0.582 43 H 0.083 0.917 44 H 0.062 0.938 45 H -0.006 1.006 46 H 0.010 0.990 47 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.568 0.099 -27.767 28.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.102 4.102 3 H 0.102 0.898 4 C -0.003 4.003 5 O -0.316 6.316 6 C 0.020 3.980 7 C -0.189 4.189 8 C -0.159 4.159 9 C -0.161 4.161 10 C -0.162 4.162 11 C -0.739 4.739 12 S 2.712 3.288 13 O -0.975 6.975 14 O -0.990 6.990 15 N -0.878 5.878 16 C 0.001 3.999 17 C -0.022 4.022 18 C -0.580 4.580 19 H 0.089 0.911 20 C -0.199 4.199 21 N -0.572 5.572 22 Si 0.791 3.209 23 H -0.181 1.181 24 H -0.210 1.210 25 H -0.204 1.204 26 H 0.096 0.904 27 H 0.097 0.903 28 H 0.076 0.924 29 H 0.081 0.919 30 H 0.089 0.911 31 H 0.092 0.908 32 H 0.082 0.918 33 H 0.091 0.909 34 H 0.096 0.904 35 H 0.090 0.910 36 H 0.098 0.902 37 H 0.079 0.921 38 H 0.102 0.898 39 H 0.086 0.914 40 H 0.175 0.825 41 H 0.184 0.816 42 H 0.252 0.748 43 H 0.101 0.899 44 H 0.080 0.920 45 H 0.012 0.988 46 H 0.029 0.971 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -7.038 1.124 -27.609 28.514 hybrid contribution 0.965 -0.907 0.929 1.618 sum -6.073 0.217 -26.680 27.364 Atomic orbital electron populations 1.22260 0.93468 1.04302 1.03472 1.20821 0.97329 1.00086 0.91964 0.89820 1.22525 0.99372 0.94744 0.83693 1.87913 1.78624 1.50998 1.14067 1.22996 0.93944 0.97127 0.83975 1.22945 0.97089 1.01631 0.97269 1.22453 0.96865 1.02089 0.94474 1.22346 0.94973 0.99802 0.98961 1.22262 0.98021 1.01369 0.94569 1.30469 1.14114 1.15438 1.13867 1.04567 0.73085 0.74794 0.76319 1.93535 1.31027 1.87358 1.85550 1.93544 1.75233 1.43556 1.86621 1.55438 1.15215 1.73029 1.44107 1.21378 0.77826 1.00764 0.99955 1.19180 0.96005 0.95436 0.91552 1.21627 0.93109 1.43940 0.99315 0.91104 1.25967 1.03187 0.95058 0.95676 1.70098 1.36880 1.45877 1.04351 0.85379 0.79321 0.77702 0.78511 1.18133 1.20973 1.20415 0.90360 0.90256 0.92380 0.91934 0.91143 0.90800 0.91791 0.90932 0.90403 0.90960 0.90208 0.92068 0.89779 0.91426 0.82463 0.81578 0.74750 0.89892 0.91987 0.98766 0.97130 0.92790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.58 8.78 71.98 0.63 -2.95 16 2 C -0.08 -1.60 2.62 -10.79 -0.03 -1.62 16 3 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 4 C 0.07 1.21 5.16 71.99 0.37 1.59 16 5 O -0.40 -7.47 9.43 -148.98 -1.41 -8.87 16 6 C 0.08 1.11 3.38 31.32 0.11 1.22 16 7 C -0.15 -2.07 6.57 31.70 0.21 -1.87 16 8 C -0.12 -1.29 6.91 31.91 0.22 -1.07 16 9 C -0.12 -1.35 6.83 31.67 0.22 -1.13 16 10 C -0.12 -1.57 6.61 31.32 0.21 -1.36 16 11 C -0.61 -11.30 5.51 71.98 0.40 -10.90 16 12 S 2.62 75.75 5.11 -56.49 -0.29 75.46 16 13 O -0.98 -32.11 15.82 -127.65 -2.02 -34.13 16 14 O -1.00 -37.07 17.50 -127.65 -2.23 -39.30 16 15 N -1.12 -35.79 5.89 -187.49 -1.10 -36.90 16 16 C 0.13 4.72 6.07 86.38 0.52 5.24 16 17 C 0.02 0.84 5.12 29.85 0.15 0.99 16 18 C -0.54 -29.03 9.11 25.60 0.23 -28.80 16 19 H 0.07 3.55 7.74 -2.91 -0.02 3.53 16 20 C 0.00 -0.04 5.46 84.65 0.46 0.42 16 21 N -0.93 -55.07 13.29 21.45 0.28 -54.79 16 22 Si 0.97 42.66 29.54 68.60 2.03 44.68 16 23 H -0.26 -10.68 7.11 99.48 0.71 -9.97 16 24 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 25 H -0.28 -11.97 7.11 99.48 0.71 -11.26 16 26 H 0.08 1.51 7.82 -2.39 -0.02 1.49 16 27 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 28 H 0.06 1.38 5.61 -2.39 -0.01 1.37 16 29 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.07 0.92 8.10 -2.39 -0.02 0.90 16 31 H 0.07 0.89 7.81 -2.39 -0.02 0.87 16 32 H 0.06 1.06 8.08 -2.38 -0.02 1.05 16 33 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 34 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 35 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 36 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 37 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 38 H 0.08 0.81 8.14 -2.39 -0.02 0.80 16 39 H 0.07 1.00 7.96 -2.38 -0.02 0.99 16 40 H 0.16 2.38 8.14 -2.39 -0.02 2.37 16 41 H 0.17 2.19 8.14 -2.39 -0.02 2.17 16 42 H 0.42 12.98 8.62 -96.74 -0.83 12.15 16 43 H 0.08 2.56 8.14 -2.39 -0.02 2.54 16 44 H 0.06 2.39 7.70 -2.39 -0.02 2.38 16 45 H -0.01 -0.34 8.14 -2.38 -0.02 -0.35 16 46 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 47 H 0.26 14.64 8.31 -92.71 -0.77 13.87 16 Total: -1.00 -71.96 387.74 -0.94 -72.90 By element: Atomic # 1 Polarization: 21.10 SS G_CDS: 0.10 Total: 21.20 kcal Atomic # 6 Polarization: -43.96 SS G_CDS: 3.70 Total: -40.26 kcal Atomic # 7 Polarization: -90.86 SS G_CDS: -0.82 Total: -91.68 kcal Atomic # 8 Polarization: -76.64 SS G_CDS: -5.66 Total: -82.30 kcal Atomic # 14 Polarization: 42.66 SS G_CDS: 2.03 Total: 44.68 kcal Atomic # 16 Polarization: 75.75 SS G_CDS: -0.29 Total: 75.46 kcal Total: -71.96 -0.94 -72.90 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338950896.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.016 kcal (2) G-P(sol) polarization free energy of solvation -71.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -176.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds