Wall clock time and date at job start Tue Mar 31 2020 13:10:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.47376 * 2 1 4 4 O 1.42898 * 109.47310 * 239.99640 * 2 1 3 5 5 C 1.42900 * 113.99767 * 90.00453 * 4 2 1 6 6 C 1.53003 * 109.47008 * 180.02562 * 5 4 2 7 7 H 1.09003 * 110.27599 * 54.29934 * 6 5 4 8 8 C 1.54944 * 110.31087 * 176.38544 * 6 5 4 9 9 C 1.55415 * 100.89440 * 155.28737 * 8 6 5 10 10 C 1.54377 * 102.30937 * 325.99198 * 9 8 6 11 11 O 1.43237 * 107.58826 * 21.28569 * 10 9 8 12 12 C 1.50700 * 109.47030 * 119.99735 * 2 1 3 13 13 O 1.21290 * 120.00249 * 120.00187 * 12 2 1 14 14 N 1.34781 * 120.00251 * 299.99990 * 12 2 1 15 15 C 1.39122 * 120.00323 * 183.74111 * 14 12 2 16 16 C 1.38650 * 120.28325 * 334.34267 * 15 14 12 17 17 C 1.38221 * 120.03076 * 179.97438 * 16 15 14 18 18 C 1.38856 * 120.61850 * 359.97438 * 17 16 15 19 19 C 1.36464 * 120.58096 * 359.97438 * 18 17 16 20 20 C 1.40740 * 119.93996 * 0.02724 * 19 18 17 21 21 C 1.41068 * 120.30099 * 179.72466 * 20 19 18 22 22 H 1.08002 * 120.00198 * 145.58206 * 21 20 19 23 23 C 1.39955 * 119.99803 * 325.58061 * 21 20 19 24 24 N 1.30852 * 120.00122 * 354.57869 * 23 21 20 25 25 Si 1.86806 * 119.99791 * 174.57903 * 23 21 20 26 26 H 1.48501 * 109.47350 * 59.99758 * 25 23 21 27 27 H 1.48501 * 109.47070 * 179.97438 * 25 23 21 28 28 H 1.48503 * 109.46870 * 299.99678 * 25 23 21 29 29 H 1.08999 * 109.46875 * 300.00080 * 1 2 3 30 30 H 1.08994 * 109.46803 * 60.00480 * 1 2 3 31 31 H 1.09002 * 109.46734 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47041 * 299.99335 * 5 4 2 33 33 H 1.08994 * 109.47822 * 59.99726 * 5 4 2 34 34 H 1.09001 * 111.12640 * 273.28242 * 8 6 5 35 35 H 1.09001 * 111.12259 * 37.43596 * 8 6 5 36 36 H 1.08998 * 110.88300 * 207.75619 * 9 8 6 37 37 H 1.09007 * 110.93159 * 84.25479 * 9 8 6 38 38 H 1.09002 * 109.83132 * 261.77083 * 10 9 8 39 39 H 1.09000 * 109.90846 * 140.83847 * 10 9 8 40 40 H 0.97002 * 119.99745 * 3.74727 * 14 12 2 41 41 H 1.07999 * 119.98365 * 359.97438 * 16 15 14 42 42 H 1.08005 * 119.68936 * 179.97438 * 17 16 15 43 43 H 1.08003 * 119.71127 * 180.02562 * 18 17 16 44 44 H 1.08001 * 120.03627 * 180.02562 * 19 18 17 45 45 H 0.97003 * 119.99887 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0064 -0.6737 -1.1667 5 6 2.2002 0.1829 -2.2940 6 6 2.7081 -0.6409 -3.4791 7 1 2.0347 -1.4753 -3.6754 8 6 2.8387 0.2523 -4.7384 9 6 3.9123 -0.5310 -5.5440 10 6 4.8072 -1.1073 -4.4259 11 8 4.0361 -1.1226 -3.2190 12 6 2.0323 -0.7104 1.2305 13 8 2.7297 -1.6965 1.1193 14 7 1.7067 -0.2499 2.4547 15 6 2.2333 -0.8583 3.5896 16 6 2.6302 -2.1862 3.5505 17 6 3.1531 -2.7854 4.6810 18 6 3.2874 -2.0694 5.8631 19 6 2.9058 -0.7609 5.9294 20 6 2.3703 -0.1269 4.7927 21 6 1.9680 1.2238 4.8542 22 1 2.0880 1.8629 3.9919 23 6 1.4132 1.7356 6.0328 24 7 1.1694 0.9383 7.0413 25 14 1.0206 3.5571 6.1660 26 1 0.0391 3.9301 5.1159 27 1 0.4450 3.8427 7.5048 28 1 2.2652 4.3463 5.9831 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.2539 0.6545 -2.5589 33 1 2.9320 0.9513 -2.0450 34 1 1.8960 0.3033 -5.2834 35 1 3.1939 1.2493 -4.4777 36 1 4.4805 0.1398 -6.1886 37 1 3.4553 -1.3311 -6.1264 38 1 5.6870 -0.4773 -4.2947 39 1 5.1138 -2.1216 -4.6816 40 1 1.1052 0.5058 2.5444 41 1 2.5307 -2.7527 2.6364 42 1 3.4602 -3.8203 4.6446 43 1 3.6983 -2.5520 6.7376 44 1 3.0146 -0.2121 6.8532 45 1 0.7845 1.2930 7.8580 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339167849.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:10:30 Heat of formation + Delta-G solvation = -106.226648 kcal Electronic energy + Delta-G solvation = -26580.078318 eV Core-core repulsion = 22755.407692 eV Total energy + Delta-G solvation = -3824.670626 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.93587 -39.52110 -37.83479 -36.70456 -33.80238 -33.57902 -32.45901 -31.92001 -30.23225 -29.54571 -28.19350 -25.77413 -25.24518 -23.91966 -21.96762 -21.51491 -21.46338 -20.64629 -19.24333 -17.49001 -17.26307 -16.94495 -16.81623 -16.05339 -15.74236 -15.35894 -15.12036 -14.75043 -14.58465 -14.04068 -13.87517 -13.56131 -13.33524 -13.03051 -12.76839 -12.56307 -12.30271 -12.24284 -12.17756 -12.01276 -11.71744 -11.61746 -11.36377 -11.29448 -11.22183 -11.17055 -11.04714 -10.87343 -10.49480 -10.10283 -9.74833 -9.69591 -9.61775 -9.25631 -9.21318 -8.52547 -7.28800 -6.90206 -6.61391 -4.40154 2.63374 2.89854 3.04509 3.06016 3.20307 3.22545 3.48182 3.61449 3.91454 4.11162 4.17725 4.54357 4.66429 4.68181 4.87921 4.89501 4.97635 5.08786 5.11885 5.23454 5.26043 5.30376 5.35255 5.48294 5.55818 5.61233 5.66367 5.70721 5.73300 5.85755 6.12610 6.38115 6.56780 6.65704 6.87873 6.94308 7.10035 7.13338 7.22801 7.31714 7.70625 7.74702 8.01888 8.12466 8.15338 8.47873 8.59057 8.85281 8.87867 9.06434 10.25473 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.016281 B = 0.002980 C = 0.002673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1719.372402 B = 9392.196641 C =10473.110634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.072 3.928 3 H 0.084 0.916 4 O -0.347 6.347 5 C 0.061 3.939 6 C 0.085 3.915 7 H 0.079 0.921 8 C -0.150 4.150 9 C -0.155 4.155 10 C 0.046 3.954 11 O -0.364 6.364 12 C 0.497 3.503 13 O -0.514 6.514 14 N -0.634 5.634 15 C 0.028 3.972 16 C -0.106 4.106 17 C -0.214 4.214 18 C -0.121 4.121 19 C -0.137 4.137 20 C 0.098 3.902 21 C -0.477 4.477 22 H 0.073 0.927 23 C 0.076 3.924 24 N -0.806 5.806 25 Si 0.910 3.090 26 H -0.267 1.267 27 H -0.279 1.279 28 H -0.266 1.266 29 H 0.075 0.925 30 H 0.064 0.936 31 H 0.071 0.929 32 H 0.062 0.938 33 H 0.057 0.943 34 H 0.086 0.914 35 H 0.081 0.919 36 H 0.082 0.918 37 H 0.077 0.923 38 H 0.068 0.932 39 H 0.068 0.932 40 H 0.404 0.596 41 H 0.125 0.875 42 H 0.091 0.909 43 H 0.088 0.912 44 H 0.120 0.880 45 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.335 3.456 -19.256 19.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.011 3.989 3 H 0.102 0.898 4 O -0.264 6.264 5 C -0.017 4.017 6 C 0.027 3.973 7 H 0.097 0.903 8 C -0.187 4.187 9 C -0.192 4.192 10 C -0.030 4.030 11 O -0.284 6.284 12 C 0.282 3.718 13 O -0.390 6.390 14 N -0.277 5.277 15 C -0.066 4.066 16 C -0.126 4.126 17 C -0.234 4.234 18 C -0.140 4.140 19 C -0.157 4.157 20 C 0.095 3.905 21 C -0.508 4.508 22 H 0.091 0.909 23 C -0.140 4.140 24 N -0.433 5.433 25 Si 0.735 3.265 26 H -0.192 1.192 27 H -0.204 1.204 28 H -0.191 1.191 29 H 0.094 0.906 30 H 0.083 0.917 31 H 0.090 0.910 32 H 0.080 0.920 33 H 0.075 0.925 34 H 0.105 0.895 35 H 0.100 0.900 36 H 0.101 0.899 37 H 0.096 0.904 38 H 0.086 0.914 39 H 0.086 0.914 40 H 0.240 0.760 41 H 0.143 0.857 42 H 0.109 0.891 43 H 0.106 0.894 44 H 0.138 0.862 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -0.826 2.508 -18.945 19.129 hybrid contribution -0.654 1.614 0.037 1.742 sum -1.480 4.122 -18.908 19.409 Atomic orbital electron populations 1.22264 0.93917 1.03820 1.02926 1.21899 0.94713 0.96330 0.85984 0.89795 1.88099 1.86504 1.33284 1.18551 1.22738 0.99283 0.93031 0.86610 1.22960 0.85856 0.95857 0.92623 0.90277 1.23271 1.00150 0.99662 0.95651 1.23129 0.97419 1.00278 0.98408 1.23146 0.94724 1.00859 0.84309 1.88621 1.22634 1.86357 1.30743 1.20247 0.81584 0.85811 0.84130 1.90623 1.37238 1.25159 1.86011 1.42834 1.46636 1.34325 1.03932 1.17895 1.08938 0.91952 0.87798 1.21059 0.99947 0.93233 0.98367 1.20408 1.10376 0.98726 0.93861 1.20509 1.01714 0.95521 0.96258 1.20896 1.01256 0.94186 0.99351 1.17376 0.90384 0.92915 0.89873 1.19205 1.37835 0.95259 0.98464 0.90876 1.25808 0.93754 0.99508 0.94945 1.69775 1.33033 1.36372 1.04117 0.86347 0.79430 0.82562 0.78159 1.19177 1.20424 1.19060 0.90632 0.91651 0.91039 0.91987 0.92467 0.89534 0.90026 0.89941 0.90414 0.91368 0.91397 0.76036 0.85703 0.89107 0.89355 0.86250 0.90974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.07 9.42 37.16 0.35 -1.72 16 2 C 0.07 1.10 3.15 -27.88 -0.09 1.01 16 3 H 0.08 1.08 7.79 -51.93 -0.40 0.68 16 4 O -0.35 -5.65 9.52 -57.83 -0.55 -6.20 16 5 C 0.06 0.71 5.45 37.16 0.20 0.91 16 6 C 0.08 0.94 3.72 -25.70 -0.10 0.85 16 7 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 8 C -0.15 -1.09 6.58 -24.42 -0.16 -1.25 16 9 C -0.15 -1.06 7.02 -24.73 -0.17 -1.23 16 10 C 0.05 0.45 7.80 37.88 0.30 0.75 16 11 O -0.36 -5.18 11.04 -35.95 -0.40 -5.58 16 12 C 0.50 10.08 7.11 -10.98 -0.08 10.00 16 13 O -0.51 -12.54 13.43 -14.36 -0.19 -12.73 16 14 N -0.63 -13.25 5.02 -9.47 -0.05 -13.30 16 15 C 0.03 0.70 6.48 -83.17 -0.54 0.16 16 16 C -0.11 -2.66 8.78 -39.44 -0.35 -3.01 16 17 C -0.21 -5.16 10.04 -39.36 -0.40 -5.55 16 18 C -0.12 -2.94 9.96 -39.99 -0.40 -3.34 16 19 C -0.14 -3.57 8.56 -39.28 -0.34 -3.91 16 20 C 0.10 2.57 5.51 -106.65 -0.59 1.98 16 21 C -0.48 -11.94 8.19 -37.87 -0.31 -12.25 16 22 H 0.07 1.72 7.46 -52.49 -0.39 1.33 16 23 C 0.08 1.84 5.31 -17.33 -0.09 1.74 16 24 N -0.81 -20.40 10.97 55.55 0.61 -19.80 16 25 Si 0.91 18.00 29.56 -169.99 -5.03 12.97 16 26 H -0.27 -5.11 7.11 56.52 0.40 -4.71 16 27 H -0.28 -5.47 7.11 56.52 0.40 -5.07 16 28 H -0.27 -5.26 7.11 56.52 0.40 -4.86 16 29 H 0.07 0.85 7.48 -51.93 -0.39 0.46 16 30 H 0.06 0.61 7.87 -51.93 -0.41 0.20 16 31 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.06 0.54 7.87 -51.93 -0.41 0.13 16 33 H 0.06 0.66 8.08 -51.93 -0.42 0.24 16 34 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.08 0.55 8.06 -51.93 -0.42 0.13 16 36 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 39 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.40 7.47 7.05 -40.82 -0.29 7.19 16 41 H 0.13 3.17 5.54 -52.49 -0.29 2.88 16 42 H 0.09 1.97 8.06 -52.48 -0.42 1.54 16 43 H 0.09 1.90 8.06 -52.48 -0.42 1.48 16 44 H 0.12 3.18 6.48 -52.49 -0.34 2.84 16 45 H 0.28 6.51 8.30 -40.82 -0.34 6.18 16 LS Contribution 369.05 15.07 5.56 5.56 Total: -1.00 -32.36 369.05 -9.49 -41.85 By element: Atomic # 1 Polarization: 18.77 SS G_CDS: -6.70 Total: 12.07 kcal Atomic # 6 Polarization: -12.10 SS G_CDS: -2.75 Total: -14.85 kcal Atomic # 7 Polarization: -33.66 SS G_CDS: 0.56 Total: -33.10 kcal Atomic # 8 Polarization: -23.37 SS G_CDS: -1.14 Total: -24.51 kcal Atomic # 14 Polarization: 18.00 SS G_CDS: -5.03 Total: 12.97 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -32.36 -9.49 -41.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339167849.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.374 kcal (2) G-P(sol) polarization free energy of solvation -32.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds