Wall clock time and date at job start Tue Mar 31 2020 13:10:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.47376 * 2 1 4 4 O 1.42898 * 109.47310 * 239.99640 * 2 1 3 5 5 C 1.42900 * 113.99767 * 90.00453 * 4 2 1 6 6 C 1.53003 * 109.47008 * 180.02562 * 5 4 2 7 7 H 1.09003 * 110.27599 * 54.29934 * 6 5 4 8 8 C 1.54944 * 110.31087 * 176.38544 * 6 5 4 9 9 C 1.55415 * 100.89440 * 155.28737 * 8 6 5 10 10 C 1.54377 * 102.30937 * 325.99198 * 9 8 6 11 11 O 1.43237 * 107.58826 * 21.28569 * 10 9 8 12 12 C 1.50700 * 109.47030 * 119.99735 * 2 1 3 13 13 O 1.21290 * 120.00249 * 120.00187 * 12 2 1 14 14 N 1.34781 * 120.00251 * 299.99990 * 12 2 1 15 15 C 1.39122 * 120.00323 * 183.74111 * 14 12 2 16 16 C 1.38650 * 120.28325 * 334.34267 * 15 14 12 17 17 C 1.38221 * 120.03076 * 179.97438 * 16 15 14 18 18 C 1.38856 * 120.61850 * 359.97438 * 17 16 15 19 19 C 1.36464 * 120.58096 * 359.97438 * 18 17 16 20 20 C 1.40740 * 119.93996 * 0.02724 * 19 18 17 21 21 C 1.41068 * 120.30099 * 179.72466 * 20 19 18 22 22 H 1.08002 * 120.00198 * 145.58206 * 21 20 19 23 23 C 1.39955 * 119.99803 * 325.58061 * 21 20 19 24 24 N 1.30852 * 120.00122 * 354.57869 * 23 21 20 25 25 Si 1.86806 * 119.99791 * 174.57903 * 23 21 20 26 26 H 1.48501 * 109.47350 * 59.99758 * 25 23 21 27 27 H 1.48501 * 109.47070 * 179.97438 * 25 23 21 28 28 H 1.48503 * 109.46870 * 299.99678 * 25 23 21 29 29 H 1.08999 * 109.46875 * 300.00080 * 1 2 3 30 30 H 1.08994 * 109.46803 * 60.00480 * 1 2 3 31 31 H 1.09002 * 109.46734 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47041 * 299.99335 * 5 4 2 33 33 H 1.08994 * 109.47822 * 59.99726 * 5 4 2 34 34 H 1.09001 * 111.12640 * 273.28242 * 8 6 5 35 35 H 1.09001 * 111.12259 * 37.43596 * 8 6 5 36 36 H 1.08998 * 110.88300 * 207.75619 * 9 8 6 37 37 H 1.09007 * 110.93159 * 84.25479 * 9 8 6 38 38 H 1.09002 * 109.83132 * 261.77083 * 10 9 8 39 39 H 1.09000 * 109.90846 * 140.83847 * 10 9 8 40 40 H 0.97002 * 119.99745 * 3.74727 * 14 12 2 41 41 H 1.07999 * 119.98365 * 359.97438 * 16 15 14 42 42 H 1.08005 * 119.68936 * 179.97438 * 17 16 15 43 43 H 1.08003 * 119.71127 * 180.02562 * 18 17 16 44 44 H 1.08001 * 120.03627 * 180.02562 * 19 18 17 45 45 H 0.97003 * 119.99887 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0064 -0.6737 -1.1667 5 6 2.2002 0.1829 -2.2940 6 6 2.7081 -0.6409 -3.4791 7 1 2.0347 -1.4753 -3.6754 8 6 2.8387 0.2523 -4.7384 9 6 3.9123 -0.5310 -5.5440 10 6 4.8072 -1.1073 -4.4259 11 8 4.0361 -1.1226 -3.2190 12 6 2.0323 -0.7104 1.2305 13 8 2.7297 -1.6965 1.1193 14 7 1.7067 -0.2499 2.4547 15 6 2.2333 -0.8583 3.5896 16 6 2.6302 -2.1862 3.5505 17 6 3.1531 -2.7854 4.6810 18 6 3.2874 -2.0694 5.8631 19 6 2.9058 -0.7609 5.9294 20 6 2.3703 -0.1269 4.7927 21 6 1.9680 1.2238 4.8542 22 1 2.0880 1.8629 3.9919 23 6 1.4132 1.7356 6.0328 24 7 1.1694 0.9383 7.0413 25 14 1.0206 3.5571 6.1660 26 1 0.0391 3.9301 5.1159 27 1 0.4450 3.8427 7.5048 28 1 2.2652 4.3463 5.9831 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.2539 0.6545 -2.5589 33 1 2.9320 0.9513 -2.0450 34 1 1.8960 0.3033 -5.2834 35 1 3.1939 1.2493 -4.4777 36 1 4.4805 0.1398 -6.1886 37 1 3.4553 -1.3311 -6.1264 38 1 5.6870 -0.4773 -4.2947 39 1 5.1138 -2.1216 -4.6816 40 1 1.1052 0.5058 2.5444 41 1 2.5307 -2.7527 2.6364 42 1 3.4602 -3.8203 4.6446 43 1 3.6983 -2.5520 6.7376 44 1 3.0146 -0.2121 6.8532 45 1 0.7845 1.2930 7.8580 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000339167849.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:10:29 Heat of formation + Delta-G solvation = -125.927030 kcal Electronic energy + Delta-G solvation = -26580.932591 eV Core-core repulsion = 22755.407692 eV Total energy + Delta-G solvation = -3825.524899 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.43677 -40.47385 -39.32334 -38.23677 -35.56294 -35.44888 -33.29705 -32.90874 -31.50553 -31.15021 -29.93134 -27.14271 -26.58334 -25.21781 -23.35191 -22.62452 -22.38081 -22.25376 -20.90774 -19.26712 -18.60304 -18.24251 -17.87156 -17.30958 -17.08220 -16.78504 -16.31922 -16.04452 -15.91641 -15.68608 -15.14492 -14.81117 -14.52163 -14.40289 -14.20219 -14.02615 -13.66846 -13.54580 -13.34136 -13.09071 -13.03829 -12.83803 -12.72519 -12.65571 -12.41166 -12.16316 -12.14094 -12.07441 -11.91925 -11.67629 -11.56068 -11.07861 -11.04429 -10.82315 -10.48257 -10.20287 -9.26299 -8.77961 -8.46103 -6.33079 0.81812 1.05752 1.44439 1.55093 1.55823 1.78920 1.97103 2.25452 2.81869 2.83780 2.95163 3.55293 3.67969 3.70775 3.88275 3.91108 3.97622 4.08595 4.15891 4.26238 4.38064 4.49170 4.51593 4.58255 4.63380 4.69268 4.75187 4.80687 4.81820 4.88554 4.97517 5.01195 5.08488 5.18344 5.21221 5.24420 5.31044 5.43199 5.79855 5.82794 6.01531 6.13531 6.16770 6.22198 6.26985 6.65787 6.75809 6.96481 7.01404 7.37574 8.44346 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.016281 B = 0.002980 C = 0.002673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1719.372402 B = 9392.196641 C =10473.110634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.081 3.919 3 H 0.112 0.888 4 O -0.383 6.383 5 C 0.054 3.946 6 C 0.073 3.927 7 H 0.072 0.928 8 C -0.138 4.138 9 C -0.147 4.147 10 C 0.034 3.966 11 O -0.412 6.412 12 C 0.490 3.510 13 O -0.562 6.562 14 N -0.629 5.629 15 C 0.020 3.980 16 C -0.124 4.124 17 C -0.221 4.221 18 C -0.124 4.124 19 C -0.160 4.160 20 C 0.072 3.928 21 C -0.495 4.495 22 H 0.084 0.916 23 C 0.035 3.965 24 N -0.838 5.838 25 Si 0.985 3.015 26 H -0.251 1.251 27 H -0.276 1.276 28 H -0.265 1.265 29 H 0.084 0.916 30 H 0.102 0.898 31 H 0.055 0.945 32 H 0.100 0.900 33 H 0.056 0.944 34 H 0.112 0.888 35 H 0.089 0.911 36 H 0.104 0.896 37 H 0.086 0.914 38 H 0.071 0.929 39 H 0.066 0.934 40 H 0.415 0.585 41 H 0.118 0.882 42 H 0.113 0.887 43 H 0.113 0.887 44 H 0.107 0.893 45 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.627 5.940 -21.188 22.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.020 3.980 3 H 0.129 0.871 4 O -0.301 6.301 5 C -0.022 4.022 6 C 0.016 3.984 7 H 0.089 0.911 8 C -0.176 4.176 9 C -0.184 4.184 10 C -0.042 4.042 11 O -0.332 6.332 12 C 0.279 3.721 13 O -0.441 6.441 14 N -0.273 5.273 15 C -0.074 4.074 16 C -0.144 4.144 17 C -0.240 4.240 18 C -0.143 4.143 19 C -0.180 4.180 20 C 0.068 3.932 21 C -0.526 4.526 22 H 0.102 0.898 23 C -0.179 4.179 24 N -0.465 5.465 25 Si 0.806 3.194 26 H -0.175 1.175 27 H -0.201 1.201 28 H -0.189 1.189 29 H 0.103 0.897 30 H 0.120 0.880 31 H 0.074 0.926 32 H 0.118 0.882 33 H 0.074 0.926 34 H 0.130 0.870 35 H 0.108 0.892 36 H 0.122 0.878 37 H 0.105 0.895 38 H 0.089 0.911 39 H 0.085 0.915 40 H 0.253 0.747 41 H 0.136 0.864 42 H 0.131 0.869 43 H 0.131 0.869 44 H 0.125 0.875 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -2.135 5.003 -20.905 21.601 hybrid contribution -0.194 0.756 0.622 0.998 sum -2.329 5.759 -20.283 21.213 Atomic orbital electron populations 1.22254 0.91153 1.03560 1.05200 1.21902 0.96525 0.96221 0.83357 0.87072 1.88067 1.86925 1.35405 1.19738 1.23061 1.01184 0.92673 0.85310 1.23199 0.84550 0.96516 0.94168 0.91056 1.23270 1.01493 0.99070 0.93718 1.23132 0.96922 1.00801 0.97555 1.23357 0.95186 1.01292 0.84363 1.88571 1.24355 1.86935 1.33369 1.21339 0.80338 0.85224 0.85250 1.90589 1.39342 1.27463 1.86747 1.42821 1.46613 1.34415 1.03430 1.18051 1.08548 0.91985 0.88852 1.21199 1.00924 0.93750 0.98517 1.20693 1.09965 0.99842 0.93512 1.20741 1.01279 0.95068 0.97213 1.20946 1.02713 0.95124 0.99235 1.17728 0.91055 0.94010 0.90376 1.19478 1.38344 0.95113 0.99617 0.89799 1.26719 0.92944 1.04185 0.94046 1.69863 1.33274 1.38598 1.04754 0.85195 0.79390 0.76240 0.78538 1.17456 1.20123 1.18918 0.89696 0.87972 0.92592 0.88216 0.92559 0.87003 0.89232 0.87786 0.89520 0.91104 0.91528 0.74697 0.86438 0.86890 0.86898 0.87469 0.90427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.55 9.42 71.98 0.68 -2.87 16 2 C 0.08 2.35 3.15 29.85 0.09 2.44 16 3 H 0.11 2.59 7.79 -2.39 -0.02 2.57 16 4 O -0.38 -12.23 9.52 -127.37 -1.21 -13.44 16 5 C 0.05 1.16 5.45 71.98 0.39 1.56 16 6 C 0.07 1.54 3.72 31.26 0.12 1.66 16 7 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 8 C -0.14 -1.61 6.58 32.09 0.21 -1.40 16 9 C -0.15 -1.67 7.02 31.89 0.22 -1.45 16 10 C 0.03 0.65 7.80 72.45 0.56 1.22 16 11 O -0.41 -11.91 11.04 -148.29 -1.64 -13.55 16 12 C 0.49 20.12 7.11 87.66 0.62 20.74 16 13 O -0.56 -28.45 13.43 15.97 0.21 -28.23 16 14 N -0.63 -26.50 5.02 -302.27 -1.52 -28.02 16 15 C 0.02 1.04 6.48 38.88 0.25 1.30 16 16 C -0.12 -6.41 8.78 22.36 0.20 -6.21 16 17 C -0.22 -10.80 10.04 22.41 0.22 -10.58 16 18 C -0.12 -6.12 9.96 22.00 0.22 -5.90 16 19 C -0.16 -8.57 8.56 22.47 0.19 -8.38 16 20 C 0.07 3.85 5.51 -21.18 -0.12 3.73 16 21 C -0.50 -24.84 8.19 23.38 0.19 -24.65 16 22 H 0.08 3.89 7.46 -2.91 -0.02 3.87 16 23 C 0.03 1.65 5.31 85.25 0.45 2.10 16 24 N -0.84 -42.68 10.97 21.83 0.24 -42.44 16 25 Si 0.99 35.87 29.56 68.60 2.03 37.89 16 26 H -0.25 -8.44 7.11 99.48 0.71 -7.73 16 27 H -0.28 -9.85 7.11 99.48 0.71 -9.15 16 28 H -0.26 -9.53 7.11 99.48 0.71 -8.82 16 29 H 0.08 1.68 7.48 -2.39 -0.02 1.66 16 30 H 0.10 1.48 7.87 -2.39 -0.02 1.46 16 31 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.10 1.36 7.87 -2.39 -0.02 1.34 16 33 H 0.06 1.20 8.08 -2.39 -0.02 1.19 16 34 H 0.11 0.76 8.14 -2.39 -0.02 0.74 16 35 H 0.09 0.92 8.06 -2.39 -0.02 0.90 16 36 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 37 H 0.09 0.84 8.14 -2.38 -0.02 0.82 16 38 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 39 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 40 H 0.42 15.15 7.05 -92.71 -0.65 14.50 16 41 H 0.12 6.23 5.54 -2.91 -0.02 6.22 16 42 H 0.11 4.90 8.06 -2.91 -0.02 4.87 16 43 H 0.11 4.85 8.06 -2.91 -0.02 4.83 16 44 H 0.11 5.90 6.48 -2.91 -0.02 5.88 16 45 H 0.29 13.30 8.30 -92.71 -0.77 12.54 16 Total: -1.00 -73.71 369.05 2.98 -70.73 By element: Atomic # 1 Polarization: 43.40 SS G_CDS: 0.35 Total: 43.75 kcal Atomic # 6 Polarization: -31.21 SS G_CDS: 4.52 Total: -26.70 kcal Atomic # 7 Polarization: -69.18 SS G_CDS: -1.28 Total: -70.46 kcal Atomic # 8 Polarization: -52.59 SS G_CDS: -2.64 Total: -55.22 kcal Atomic # 14 Polarization: 35.87 SS G_CDS: 2.03 Total: 37.89 kcal Total: -73.71 2.98 -70.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339167849.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.194 kcal (2) G-P(sol) polarization free energy of solvation -73.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds