Wall clock time and date at job start Tue Mar 31 2020 13:01:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34231 * 116.99884 * 2 1 4 4 O 1.20833 * 119.99948 * 0.02562 * 3 2 1 5 5 C 1.50701 * 120.00225 * 179.97438 * 3 2 1 6 6 H 1.08997 * 109.47188 * 300.00609 * 5 3 2 7 7 C 1.53001 * 109.46917 * 60.00033 * 5 3 2 8 8 C 1.52996 * 109.47334 * 179.97438 * 5 3 2 9 9 N 1.46495 * 109.47168 * 174.99924 * 8 5 3 10 10 C 1.34779 * 120.00324 * 180.02562 * 9 8 5 11 11 O 1.21278 * 119.99703 * 0.02562 * 10 9 8 12 12 C 1.50698 * 120.00201 * 179.97438 * 10 9 8 13 13 C 1.52996 * 109.47044 * 179.97438 * 12 10 9 14 14 H 1.08995 * 109.47493 * 305.98058 * 13 12 10 15 15 C 1.50699 * 109.46802 * 65.98063 * 13 12 10 16 16 H 1.07996 * 120.00319 * 26.91275 * 15 13 12 17 17 C 1.37882 * 120.00193 * 206.90875 * 15 13 12 18 18 N 1.31519 * 119.99874 * 353.28371 * 17 15 13 19 19 Si 1.86801 * 120.00294 * 173.55447 * 17 15 13 20 20 H 1.48497 * 109.47144 * 269.72519 * 19 17 15 21 21 H 1.48498 * 109.46829 * 29.72826 * 19 17 15 22 22 H 1.48507 * 109.46835 * 149.72714 * 19 17 15 23 23 C 1.50699 * 109.47289 * 185.97873 * 13 12 10 24 24 C 1.38237 * 119.99863 * 294.44402 * 23 13 12 25 25 C 1.38237 * 119.99818 * 179.78435 * 24 23 13 26 26 C 1.38229 * 120.00057 * 0.44553 * 25 24 23 27 27 C 1.38236 * 119.99936 * 359.80698 * 26 25 24 28 28 C 1.38230 * 120.00146 * 359.97438 * 27 26 25 29 29 H 1.08993 * 109.47556 * 299.99609 * 1 2 3 30 30 H 1.09004 * 109.47597 * 59.99846 * 1 2 3 31 31 H 1.09006 * 109.47235 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47543 * 300.00590 * 7 5 3 33 33 H 1.09010 * 109.46939 * 60.00149 * 7 5 3 34 34 H 1.08997 * 109.47059 * 180.02562 * 7 5 3 35 35 H 1.09006 * 109.46938 * 55.00395 * 8 5 3 36 36 H 1.08995 * 109.47200 * 295.00348 * 8 5 3 37 37 H 0.97006 * 119.99754 * 0.02562 * 9 8 5 38 38 H 1.09006 * 109.46831 * 60.00366 * 12 10 9 39 39 H 1.08995 * 109.47505 * 300.00197 * 12 10 9 40 40 H 0.97005 * 119.99795 * 354.69035 * 18 17 15 41 41 H 1.07999 * 119.99895 * 359.97438 * 24 23 13 42 42 H 1.08004 * 120.00271 * 180.27444 * 25 24 23 43 43 H 1.08007 * 120.00590 * 179.83396 * 26 25 24 44 44 H 1.08003 * 120.00202 * 180.02562 * 27 26 25 45 45 H 1.08004 * 120.00248 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2094 0.0005 5 6 3.5663 1.2750 0.0006 6 1 3.9557 0.7810 0.8907 7 6 4.1138 0.5812 -1.2483 8 6 4.0000 2.7422 -0.0002 9 7 5.4579 2.8204 0.1208 10 6 6.0689 4.0216 0.1422 11 8 5.4116 5.0377 0.0619 12 6 7.5685 4.1021 0.2673 13 6 8.0023 5.5693 0.2664 14 1 7.5988 6.0670 -0.6154 15 6 7.4826 6.2474 1.5078 16 1 7.2988 5.6701 2.4018 17 6 7.2420 7.6051 1.5024 18 7 7.5886 8.3302 0.4613 19 14 6.4304 8.4157 2.9767 20 1 4.9566 8.4110 2.7953 21 1 6.7799 7.6646 4.2092 22 1 6.9098 9.8161 3.0977 23 6 9.5070 5.6483 0.2433 24 6 10.2400 5.1854 1.3200 25 6 11.6205 5.2538 1.2970 26 6 12.2676 5.7934 0.2011 27 6 11.5343 6.2610 -0.8734 28 6 10.1541 6.1885 -0.8523 29 1 -0.3634 0.5137 0.8899 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 3.8048 -0.4640 -1.2484 33 1 3.7244 1.0752 -2.1386 34 1 5.2023 0.6379 -1.2477 35 1 3.5375 3.2582 0.8412 36 1 3.6869 3.2131 -0.9319 37 1 5.9835 2.0077 0.1854 38 1 8.0314 3.5863 -0.5741 39 1 7.8813 3.6310 1.1990 40 1 8.0820 7.9253 -0.2691 41 1 9.7342 4.7676 2.1780 42 1 12.1934 4.8881 2.1363 43 1 13.3460 5.8493 0.1842 44 1 12.0399 6.6822 -1.7298 45 1 9.5812 6.5543 -1.6916 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000355529456.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:01:35 Heat of formation + Delta-G solvation = -111.706678 kcal Electronic energy + Delta-G solvation = -26410.147605 eV Core-core repulsion = 22585.239347 eV Total energy + Delta-G solvation = -3824.908258 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.85024 -39.21509 -38.33092 -36.93457 -35.68217 -34.20492 -32.49426 -31.26258 -30.10904 -29.06852 -28.06435 -26.75259 -24.99036 -23.64187 -22.68875 -21.66143 -20.50433 -20.34197 -19.51345 -17.82274 -17.13549 -16.84831 -16.62272 -16.17966 -15.84438 -15.35604 -15.02602 -14.60242 -14.20892 -13.95199 -13.83516 -13.63758 -13.41520 -13.15744 -13.00326 -12.66037 -12.63096 -12.36137 -12.27219 -12.26561 -11.83628 -11.64286 -11.40590 -11.33696 -11.08172 -10.87732 -10.67727 -10.60500 -10.42656 -10.11964 -10.02849 -9.68636 -9.06246 -8.67922 -8.58888 -8.25426 -8.13718 -7.63232 -6.20154 -3.89287 1.95198 2.19215 2.24131 2.34085 3.46496 3.53562 3.59226 3.68513 3.71442 4.27223 4.54799 4.60630 4.62290 4.69659 4.80818 4.88902 4.92266 5.21925 5.35593 5.42620 5.45683 5.59838 5.63559 5.65172 5.71403 5.76460 5.85952 5.99133 6.04334 6.08700 6.10616 6.17651 6.32027 6.42366 6.68417 6.78680 6.79626 6.93235 7.21432 7.23230 7.38434 7.48013 7.73779 7.86076 7.98093 8.24454 8.54153 8.97860 9.01628 9.79620 11.19393 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.014150 B = 0.003132 C = 0.002706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1978.256928 B = 8937.190068 C =10344.491689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.359 6.359 3 C 0.468 3.532 4 O -0.497 6.497 5 C -0.094 4.094 6 H 0.116 0.884 7 C -0.145 4.145 8 C 0.137 3.863 9 N -0.749 5.749 10 C 0.513 3.487 11 O -0.494 6.494 12 C -0.115 4.115 13 C 0.072 3.928 14 H 0.050 0.950 15 C -0.568 4.568 16 H 0.046 0.954 17 C 0.032 3.968 18 N -0.907 5.907 19 Si 1.063 2.937 20 H -0.288 1.288 21 H -0.291 1.291 22 H -0.288 1.288 23 C -0.033 4.033 24 C -0.106 4.106 25 C -0.130 4.130 26 C -0.152 4.152 27 C -0.125 4.125 28 C -0.130 4.130 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.101 0.899 32 H 0.071 0.929 33 H 0.064 0.936 34 H 0.075 0.925 35 H 0.075 0.925 36 H 0.072 0.928 37 H 0.393 0.607 38 H 0.066 0.934 39 H 0.080 0.920 40 H 0.271 0.729 41 H 0.115 0.885 42 H 0.107 0.893 43 H 0.106 0.894 44 H 0.107 0.893 45 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.941 -19.468 -2.317 19.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.276 6.276 3 C 0.309 3.691 4 O -0.383 6.383 5 C -0.113 4.113 6 H 0.134 0.866 7 C -0.202 4.202 8 C 0.012 3.988 9 N -0.406 5.406 10 C 0.299 3.701 11 O -0.364 6.364 12 C -0.155 4.155 13 C 0.053 3.947 14 H 0.068 0.932 15 C -0.606 4.606 16 H 0.064 0.936 17 C -0.173 4.173 18 N -0.542 5.542 19 Si 0.892 3.108 20 H -0.214 1.214 21 H -0.217 1.217 22 H -0.214 1.214 23 C -0.034 4.034 24 C -0.124 4.124 25 C -0.148 4.148 26 C -0.171 4.171 27 C -0.143 4.143 28 C -0.148 4.148 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.119 0.881 32 H 0.090 0.910 33 H 0.083 0.917 34 H 0.094 0.906 35 H 0.093 0.907 36 H 0.091 0.909 37 H 0.226 0.774 38 H 0.084 0.916 39 H 0.098 0.902 40 H 0.082 0.918 41 H 0.133 0.867 42 H 0.125 0.875 43 H 0.124 0.876 44 H 0.125 0.875 45 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -5.271 -16.907 -1.818 17.803 hybrid contribution 0.601 -1.749 -0.366 1.885 sum -4.669 -18.656 -2.184 19.355 Atomic orbital electron populations 1.23281 0.76231 1.03658 1.02750 1.86486 1.23479 1.33370 1.84224 1.23540 0.91681 0.81419 0.72444 1.90736 1.67031 1.36219 1.44296 1.21221 0.87784 0.99381 1.02952 0.86648 1.21806 1.02193 1.00714 0.95501 1.20979 0.81935 0.92108 1.03742 1.46134 1.06331 1.09147 1.79000 1.20877 0.91079 0.82261 0.75848 1.90775 1.66434 1.34065 1.45170 1.21658 0.90608 1.01649 1.01606 1.17867 0.86518 0.90016 1.00293 0.93223 1.21562 1.46910 0.95228 0.96852 0.93611 1.25572 0.95673 0.94443 1.01637 1.70703 1.35971 1.39356 1.08143 0.83646 0.76678 0.75690 0.74771 1.21425 1.21714 1.21361 1.20857 0.98345 0.92555 0.91602 1.20926 0.92834 1.00431 0.98254 1.21015 0.94919 1.01095 0.97808 1.20825 0.98624 1.02542 0.95065 1.20964 0.94366 1.00725 0.98225 1.21078 0.93917 1.01183 0.98654 0.91784 0.91820 0.88066 0.91031 0.91719 0.90571 0.90697 0.90943 0.77386 0.91569 0.90188 0.91756 0.86671 0.87458 0.87598 0.87463 0.87152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 10.56 101.05 1.07 1.32 16 2 O -0.36 -3.46 10.47 -39.26 -0.41 -3.87 16 3 C 0.47 5.41 7.26 36.01 0.26 5.67 16 4 O -0.50 -7.52 15.67 -18.76 -0.29 -7.82 16 5 C -0.09 -0.91 2.87 -91.77 -0.26 -1.17 16 6 H 0.12 0.88 8.14 -51.93 -0.42 0.46 16 7 C -0.14 -1.10 9.00 37.16 0.33 -0.77 16 8 C 0.14 1.90 4.41 -4.05 -0.02 1.88 16 9 N -0.75 -10.55 5.28 -60.30 -0.32 -10.87 16 10 C 0.51 10.08 7.58 -10.99 -0.08 10.00 16 11 O -0.49 -12.51 15.02 5.56 0.08 -12.43 16 12 C -0.11 -2.18 4.95 -27.89 -0.14 -2.31 16 13 C 0.07 1.72 1.23 -92.93 -0.11 1.61 16 14 H 0.05 1.35 6.59 -51.93 -0.34 1.00 16 15 C -0.57 -15.52 6.35 -34.44 -0.22 -15.73 16 16 H 0.05 1.26 7.82 -52.49 -0.41 0.84 16 17 C 0.03 0.94 5.45 -17.82 -0.10 0.84 16 18 N -0.91 -27.93 13.56 55.43 0.75 -27.18 16 19 Si 1.06 26.71 29.91 -169.99 -5.08 21.63 16 20 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 21 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 22 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 23 C -0.03 -0.72 4.53 -104.62 -0.47 -1.20 16 24 C -0.11 -2.15 8.90 -39.58 -0.35 -2.51 16 25 C -0.13 -2.32 10.05 -39.58 -0.40 -2.72 16 26 C -0.15 -2.63 10.05 -39.59 -0.40 -3.02 16 27 C -0.12 -2.27 10.05 -39.59 -0.40 -2.67 16 28 C -0.13 -2.70 9.18 -39.59 -0.36 -3.07 16 29 H 0.06 0.48 8.13 -51.93 -0.42 0.05 16 30 H 0.06 0.47 8.13 -51.93 -0.42 0.04 16 31 H 0.10 0.43 8.14 -51.93 -0.42 0.00 16 32 H 0.07 0.45 8.11 -51.93 -0.42 0.03 16 33 H 0.06 0.54 8.14 -51.92 -0.42 0.12 16 34 H 0.08 0.50 7.18 -51.93 -0.37 0.13 16 35 H 0.07 1.23 7.95 -51.93 -0.41 0.81 16 36 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 37 H 0.39 4.00 7.65 -40.82 -0.31 3.69 16 38 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 39 H 0.08 1.40 7.97 -51.93 -0.41 0.98 16 40 H 0.27 8.20 6.24 -40.82 -0.25 7.95 16 41 H 0.12 2.28 7.85 -52.49 -0.41 1.86 16 42 H 0.11 1.61 8.06 -52.48 -0.42 1.18 16 43 H 0.11 1.51 8.06 -52.48 -0.42 1.09 16 44 H 0.11 1.67 8.06 -52.48 -0.42 1.24 16 45 H 0.11 2.27 7.95 -52.48 -0.42 1.85 16 LS Contribution 380.10 15.07 5.73 5.73 Total: -1.00 -36.07 380.10 -7.99 -44.06 By element: Atomic # 1 Polarization: 11.40 SS G_CDS: -6.79 Total: 4.61 kcal Atomic # 6 Polarization: -12.21 SS G_CDS: -1.65 Total: -13.86 kcal Atomic # 7 Polarization: -38.48 SS G_CDS: 0.43 Total: -38.05 kcal Atomic # 8 Polarization: -23.49 SS G_CDS: -0.62 Total: -24.12 kcal Atomic # 14 Polarization: 26.71 SS G_CDS: -5.08 Total: 21.63 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -36.07 -7.99 -44.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355529456.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.642 kcal (2) G-P(sol) polarization free energy of solvation -36.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds