Wall clock time and date at job start Tue Mar 31 2020 13:01:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34237 * 116.99724 * 2 1 4 4 O 1.20821 * 119.99687 * 0.02562 * 3 2 1 5 5 C 1.50701 * 119.99788 * 180.02562 * 3 2 1 6 6 H 1.09005 * 109.46984 * 59.99955 * 5 3 2 7 7 C 1.53000 * 109.47239 * 300.00127 * 5 3 2 8 8 C 1.52998 * 109.46720 * 179.97438 * 5 3 2 9 9 N 1.46505 * 109.46984 * 184.99956 * 8 5 3 10 10 C 1.34768 * 120.00067 * 180.02562 * 9 8 5 11 11 O 1.21277 * 120.00180 * 0.02562 * 10 9 8 12 12 C 1.50702 * 119.99925 * 180.27346 * 10 9 8 13 13 C 1.53000 * 109.47233 * 179.72628 * 12 10 9 14 14 H 1.08999 * 109.47376 * 54.99922 * 13 12 10 15 15 C 1.50701 * 109.47142 * 295.00279 * 13 12 10 16 16 H 1.08003 * 119.99757 * 325.85300 * 15 13 12 17 17 C 1.37877 * 120.00219 * 145.84865 * 15 13 12 18 18 N 1.31511 * 119.99635 * 6.12068 * 17 15 13 19 19 Si 1.86799 * 119.99891 * 186.11621 * 17 15 13 20 20 H 1.48495 * 109.47055 * 90.00717 * 19 17 15 21 21 H 1.48501 * 109.46941 * 210.00148 * 19 17 15 22 22 H 1.48498 * 109.47326 * 329.99922 * 19 17 15 23 23 C 1.50703 * 109.47220 * 175.00524 * 13 12 10 24 24 C 1.38232 * 120.00286 * 63.45433 * 23 13 12 25 25 C 1.38234 * 119.99801 * 179.80987 * 24 23 13 26 26 C 1.38232 * 120.00046 * 0.40228 * 25 24 23 27 27 C 1.38238 * 120.00161 * 359.85099 * 26 25 24 28 28 C 1.38231 * 119.99566 * 359.95849 * 27 26 25 29 29 H 1.09000 * 109.47157 * 59.99873 * 1 2 3 30 30 H 1.09001 * 109.46923 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47303 * 299.99937 * 1 2 3 32 32 H 1.09001 * 109.47034 * 59.99452 * 7 5 3 33 33 H 1.08994 * 109.46880 * 180.02562 * 7 5 3 34 34 H 1.08999 * 109.46646 * 300.00428 * 7 5 3 35 35 H 1.09003 * 109.46830 * 65.00642 * 8 5 3 36 36 H 1.08993 * 109.47558 * 305.00201 * 8 5 3 37 37 H 0.97007 * 119.99913 * 0.02562 * 9 8 5 38 38 H 1.09001 * 109.47330 * 299.72581 * 12 10 9 39 39 H 1.09004 * 109.47211 * 59.72666 * 12 10 9 40 40 H 0.97001 * 119.99594 * 179.97438 * 18 17 15 41 41 H 1.08001 * 119.99824 * 0.02562 * 24 23 13 42 42 H 1.07998 * 119.99781 * 180.22872 * 25 24 23 43 43 H 1.08005 * 119.99731 * 179.83781 * 26 25 24 44 44 H 1.07994 * 119.99773 * 179.97438 * 27 26 25 45 45 H 1.08001 * 119.99564 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4032 2.2093 0.0005 5 6 3.5663 1.2750 -0.0006 6 1 3.9557 0.7810 -0.8909 7 6 4.1139 0.5811 1.2483 8 6 4.0000 2.7422 -0.0011 9 7 5.4579 2.8204 -0.1220 10 6 6.0689 4.0215 -0.1435 11 8 5.4118 5.0376 -0.0622 12 6 7.5680 4.1021 -0.2741 13 6 8.0014 5.5694 -0.2795 14 1 7.6154 6.0656 0.6109 15 6 7.4569 6.2495 -1.5092 16 1 7.3653 5.6998 -2.4344 17 6 7.0756 7.5733 -1.4532 18 7 7.2979 8.2760 -0.3640 19 14 6.2435 8.3686 -2.9244 20 1 4.7726 8.1982 -2.8130 21 1 6.5730 9.8163 -2.9566 22 1 6.7236 7.7239 -4.1730 23 6 9.5063 5.6488 -0.2865 24 6 10.2199 5.1484 -1.3594 25 6 11.6002 5.2247 -1.3674 26 6 12.2671 5.7940 -0.2988 27 6 11.5537 6.2897 0.7765 28 6 10.1734 6.2168 0.7827 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 3.8048 -0.4641 1.2482 33 1 5.2023 0.6386 1.2480 34 1 3.7244 1.0750 2.1385 35 1 3.6869 3.2139 0.9304 36 1 3.5374 3.2576 -0.8428 37 1 5.9836 2.0077 -0.1867 38 1 8.0342 3.5887 0.5669 39 1 7.8776 3.6284 -1.2058 40 1 7.0300 9.2074 -0.3248 41 1 9.6990 4.7009 -2.1929 42 1 12.1575 4.8371 -2.2073 43 1 13.3456 5.8513 -0.3040 44 1 12.0749 6.7340 1.6115 45 1 9.6160 6.6037 1.6231 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000355529459.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:01:41 Heat of formation + Delta-G solvation = -107.866007 kcal Electronic energy + Delta-G solvation = -26372.541417 eV Core-core repulsion = 22547.799703 eV Total energy + Delta-G solvation = -3824.741714 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.81939 -39.08653 -38.19017 -36.89651 -35.60954 -33.91259 -32.41503 -31.37844 -29.98333 -28.93787 -28.03825 -26.76316 -25.33053 -23.69044 -22.52553 -21.59006 -20.45997 -20.22012 -19.23547 -17.78693 -17.01759 -16.69598 -16.45912 -16.13233 -15.72389 -15.24646 -14.98887 -14.44145 -14.17427 -14.10044 -13.78292 -13.77443 -13.36716 -13.05876 -12.83237 -12.62436 -12.50971 -12.29687 -12.24918 -11.90569 -11.83937 -11.58767 -11.35911 -11.30422 -11.05680 -10.82129 -10.66372 -10.57298 -10.52755 -10.23240 -10.03039 -9.41497 -9.04354 -8.85623 -8.57028 -8.29240 -8.01989 -7.57908 -5.89681 -3.89091 1.98252 2.31383 2.34631 2.39436 3.42198 3.47756 3.50063 3.58323 3.76922 4.31517 4.56077 4.59004 4.65225 4.77941 4.82739 4.90869 4.96123 5.23983 5.40385 5.46224 5.47128 5.68164 5.71059 5.75415 5.76391 5.86631 5.90785 6.09465 6.11783 6.14977 6.22560 6.31664 6.43870 6.56304 6.82719 6.88038 6.93696 7.07445 7.33541 7.47540 7.50971 7.55865 7.89213 7.98029 8.06128 8.11480 8.42125 9.09791 9.12441 9.73139 11.20588 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.013891 B = 0.003165 C = 0.002724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2015.157441 B = 8845.333486 C =10275.157473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.359 6.359 3 C 0.467 3.533 4 O -0.497 6.497 5 C -0.094 4.094 6 H 0.115 0.885 7 C -0.145 4.145 8 C 0.137 3.863 9 N -0.751 5.751 10 C 0.512 3.488 11 O -0.490 6.490 12 C -0.121 4.121 13 C 0.080 3.920 14 H 0.072 0.928 15 C -0.493 4.493 16 H 0.050 0.950 17 C 0.079 3.921 18 N -0.881 5.881 19 Si 0.885 3.115 20 H -0.280 1.280 21 H -0.289 1.289 22 H -0.276 1.276 23 C -0.020 4.020 24 C -0.116 4.116 25 C -0.132 4.132 26 C -0.156 4.156 27 C -0.128 4.128 28 C -0.119 4.119 29 H 0.063 0.937 30 H 0.101 0.899 31 H 0.063 0.937 32 H 0.070 0.930 33 H 0.076 0.924 34 H 0.064 0.936 35 H 0.072 0.928 36 H 0.074 0.926 37 H 0.392 0.608 38 H 0.066 0.934 39 H 0.077 0.923 40 H 0.259 0.741 41 H 0.113 0.887 42 H 0.105 0.895 43 H 0.103 0.897 44 H 0.105 0.895 45 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.643 -18.706 2.566 19.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.276 6.276 3 C 0.309 3.691 4 O -0.383 6.383 5 C -0.113 4.113 6 H 0.133 0.867 7 C -0.202 4.202 8 C 0.013 3.987 9 N -0.408 5.408 10 C 0.298 3.702 11 O -0.361 6.361 12 C -0.161 4.161 13 C 0.061 3.939 14 H 0.090 0.910 15 C -0.530 4.530 16 H 0.068 0.932 17 C -0.124 4.124 18 N -0.518 5.518 19 Si 0.714 3.286 20 H -0.206 1.206 21 H -0.215 1.215 22 H -0.201 1.201 23 C -0.021 4.021 24 C -0.134 4.134 25 C -0.150 4.150 26 C -0.174 4.174 27 C -0.146 4.146 28 C -0.137 4.137 29 H 0.082 0.918 30 H 0.119 0.881 31 H 0.082 0.918 32 H 0.089 0.911 33 H 0.095 0.905 34 H 0.083 0.917 35 H 0.090 0.910 36 H 0.092 0.908 37 H 0.225 0.775 38 H 0.084 0.916 39 H 0.095 0.905 40 H 0.068 0.932 41 H 0.131 0.869 42 H 0.123 0.877 43 H 0.122 0.878 44 H 0.123 0.877 45 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -4.407 -17.402 2.710 18.155 hybrid contribution -0.475 0.281 -1.000 1.142 sum -4.882 -17.121 1.710 17.886 Atomic orbital electron populations 1.23275 0.76286 1.03630 1.02727 1.86490 1.23438 1.33414 1.84242 1.23565 0.91721 0.81393 0.72417 1.90731 1.67036 1.36234 1.44309 1.21230 0.87690 0.99483 1.02935 0.86680 1.21801 1.02242 1.00649 0.95496 1.20964 0.82125 0.91978 1.03675 1.46173 1.06198 1.09232 1.79184 1.20922 0.91164 0.82184 0.75890 1.90784 1.66399 1.33964 1.44928 1.21794 0.90510 1.02452 1.01392 1.17836 0.86244 0.88794 1.01066 0.90986 1.20682 1.41465 0.95794 0.95101 0.93155 1.24798 0.94749 0.97361 0.95492 1.69910 1.46268 1.08416 1.27196 0.86709 0.80381 0.78333 0.83194 1.20617 1.21522 1.20135 1.20743 0.98216 0.91785 0.91373 1.20945 0.92988 1.00977 0.98451 1.20969 0.94870 1.01221 0.97943 1.20790 0.98477 1.02733 0.95423 1.20980 0.94641 1.00845 0.98157 1.21089 0.93418 1.00144 0.99043 0.91822 0.88090 0.91826 0.91088 0.90510 0.91734 0.90979 0.90812 0.77459 0.91606 0.90486 0.93154 0.86910 0.87707 0.87849 0.87672 0.86847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 10.56 101.05 1.07 1.32 16 2 O -0.36 -3.51 10.47 -39.28 -0.41 -3.92 16 3 C 0.47 5.48 7.26 36.01 0.26 5.74 16 4 O -0.50 -7.61 15.67 -18.75 -0.29 -7.90 16 5 C -0.09 -0.92 2.86 -91.77 -0.26 -1.18 16 6 H 0.12 0.89 8.14 -51.93 -0.42 0.47 16 7 C -0.14 -1.11 9.00 37.16 0.33 -0.78 16 8 C 0.14 1.92 4.41 -4.04 -0.02 1.90 16 9 N -0.75 -10.62 5.28 -60.30 -0.32 -10.94 16 10 C 0.51 10.05 7.58 -10.99 -0.08 9.97 16 11 O -0.49 -12.42 14.98 5.56 0.08 -12.34 16 12 C -0.12 -2.28 4.95 -27.88 -0.14 -2.42 16 13 C 0.08 1.89 1.67 -92.92 -0.16 1.74 16 14 H 0.07 1.98 6.98 -51.93 -0.36 1.62 16 15 C -0.49 -13.31 6.37 -34.44 -0.22 -13.53 16 16 H 0.05 1.35 7.82 -52.48 -0.41 0.94 16 17 C 0.08 2.27 5.45 -17.82 -0.10 2.17 16 18 N -0.88 -26.18 12.87 55.43 0.71 -25.47 16 19 Si 0.89 22.63 29.54 -169.99 -5.02 17.61 16 20 H -0.28 -7.31 7.11 56.52 0.40 -6.91 16 21 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 22 H -0.28 -6.87 7.11 56.52 0.40 -6.46 16 23 C -0.02 -0.45 4.77 -104.62 -0.50 -0.95 16 24 C -0.12 -2.32 8.86 -39.59 -0.35 -2.67 16 25 C -0.13 -2.35 10.05 -39.58 -0.40 -2.75 16 26 C -0.16 -2.71 10.05 -39.58 -0.40 -3.11 16 27 C -0.13 -2.36 10.05 -39.58 -0.40 -2.76 16 28 C -0.12 -2.51 9.67 -39.59 -0.38 -2.89 16 29 H 0.06 0.48 8.13 -51.93 -0.42 0.06 16 30 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.06 0.47 8.13 -51.93 -0.42 0.05 16 32 H 0.07 0.45 8.11 -51.93 -0.42 0.03 16 33 H 0.08 0.51 7.18 -51.93 -0.37 0.14 16 34 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 36 H 0.07 1.22 7.96 -51.93 -0.41 0.81 16 37 H 0.39 4.01 7.66 -40.82 -0.31 3.70 16 38 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 39 H 0.08 1.32 7.78 -51.93 -0.40 0.92 16 40 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 41 H 0.11 2.18 7.76 -52.49 -0.41 1.77 16 42 H 0.10 1.58 8.06 -52.49 -0.42 1.15 16 43 H 0.10 1.50 8.06 -52.48 -0.42 1.07 16 44 H 0.11 1.66 8.06 -52.49 -0.42 1.24 16 45 H 0.11 2.42 7.95 -52.49 -0.42 2.00 16 LS Contribution 382.33 15.07 5.76 5.76 Total: -1.00 -35.01 382.33 -8.11 -43.12 By element: Atomic # 1 Polarization: 11.17 SS G_CDS: -6.88 Total: 4.29 kcal Atomic # 6 Polarization: -8.47 SS G_CDS: -1.74 Total: -10.20 kcal Atomic # 7 Polarization: -36.80 SS G_CDS: 0.39 Total: -36.41 kcal Atomic # 8 Polarization: -23.54 SS G_CDS: -0.62 Total: -24.17 kcal Atomic # 14 Polarization: 22.63 SS G_CDS: -5.02 Total: 17.61 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -35.01 -8.11 -43.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355529459.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.744 kcal (2) G-P(sol) polarization free energy of solvation -35.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds