Wall clock time and date at job start Tue Mar 31 2020 12:56:44
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 H 1.08999 * 109.46987 * 2 1
4 4 C 1.50692 * 109.47267 * 120.00602 * 2 1 3
5 5 H 1.08003 * 120.00316 * 114.36808 * 4 2 1
6 6 C 1.37886 * 119.99877 * 294.36601 * 4 2 1
7 7 N 1.31510 * 119.99961 * 156.89610 * 6 4 2
8 8 Si 1.86796 * 119.99750 * 337.17309 * 6 4 2
9 9 H 1.48495 * 109.47179 * 179.72455 * 8 6 4
10 10 H 1.48502 * 109.47231 * 299.72156 * 8 6 4
11 11 H 1.48498 * 109.47554 * 59.72235 * 8 6 4
12 12 N 1.46509 * 109.47062 * 240.00243 * 2 1 3
13 13 C 1.46502 * 119.99604 * 300.00516 * 12 2 1
14 14 S 1.65598 * 119.99835 * 119.99654 * 12 2 1
15 15 O 1.42100 * 104.27533 * 206.07117 * 14 12 2
16 16 O 1.42098 * 104.27792 * 333.92888 * 14 12 2
17 17 C 1.81402 * 104.44785 * 90.00478 * 14 12 2
18 18 C 1.52996 * 109.47341 * 179.97438 * 17 14 12
19 19 O 1.42896 * 109.47342 * 180.02562 * 18 17 14
20 20 C 1.42896 * 114.00003 * 180.02562 * 19 18 17
21 21 C 1.53007 * 109.47300 * 179.97438 * 20 19 18
22 22 C 1.54266 * 110.02920 * 292.90907 * 21 20 19
23 23 C 1.54964 * 104.15799 * 217.13656 * 22 21 20
24 24 C 1.54892 * 102.77745 * 37.88284 * 23 22 21
25 25 C 1.53869 * 110.03364 * 175.68742 * 21 20 19
26 26 H 1.09002 * 109.47176 * 293.29860 * 1 2 3
27 27 H 1.09005 * 109.47375 * 53.29697 * 1 2 3
28 28 H 1.09000 * 109.47483 * 173.29600 * 1 2 3
29 29 H 0.97000 * 120.00294 * 355.20558 * 7 6 4
30 30 H 1.08992 * 109.47772 * 90.00121 * 13 12 2
31 31 H 1.09003 * 109.46297 * 209.99546 * 13 12 2
32 32 H 1.08994 * 109.47613 * 329.99192 * 13 12 2
33 33 H 1.09004 * 109.46596 * 299.99676 * 17 14 12
34 34 H 1.09002 * 109.47229 * 59.99720 * 17 14 12
35 35 H 1.09003 * 109.47130 * 300.00285 * 18 17 14
36 36 H 1.09002 * 109.47062 * 59.99771 * 18 17 14
37 37 H 1.09001 * 109.47064 * 299.99704 * 20 19 18
38 38 H 1.08997 * 109.47337 * 59.99942 * 20 19 18
39 39 H 1.08999 * 110.01347 * 54.29524 * 21 20 19
40 40 H 1.09002 * 110.48891 * 335.77915 * 22 21 20
41 41 H 1.08993 * 110.49203 * 98.42356 * 22 21 20
42 42 H 1.09004 * 110.71922 * 279.57236 * 23 22 21
43 43 H 1.08997 * 110.92865 * 156.29974 * 23 22 21
44 44 H 1.09005 * 110.48281 * 203.40696 * 24 23 22
45 45 H 1.08997 * 110.59390 * 80.82713 * 24 23 22
46 46 H 1.09002 * 110.03006 * 238.56810 * 25 21 20
47 47 H 1.08999 * 110.03565 * 359.95415 * 25 21 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 6 2.0323 -0.7105 1.2303
5 1 2.5762 -1.6386 1.1338
6 6 1.7977 -0.1757 2.4794
7 7 1.8081 -0.9531 3.5401
8 14 1.4573 1.6517 2.6639
9 1 1.2326 1.9711 4.0966
10 1 2.6208 2.4253 2.1609
11 1 0.2479 2.0116 1.8810
12 7 2.0183 -0.6906 -1.1963
13 6 1.6642 -2.0932 -1.4281
14 16 2.9703 0.1143 -2.2863
15 8 2.7431 -0.5611 -3.5157
16 8 2.6120 1.4797 -2.1234
17 6 4.6648 -0.1729 -1.7061
18 6 5.6504 0.5286 -2.6426
19 8 6.9853 0.3019 -2.1859
20 6 7.9890 0.9183 -2.9949
21 6 9.3712 0.6113 -2.4150
22 6 9.5378 1.3083 -1.0489
23 6 11.0202 1.7593 -1.0317
24 6 11.2612 2.2002 -2.4969
25 6 10.4667 1.1777 -3.3352
26 1 -0.3634 0.4065 0.9439
27 1 -0.3634 0.6142 -0.8239
28 1 -0.3634 -1.0206 -0.1200
29 1 1.9115 -1.9121 3.4376
30 1 0.7375 -2.1443 -1.9995
31 1 2.4627 -2.5818 -1.9866
32 1 1.5294 -2.5969 -0.4711
33 1 4.7757 0.2249 -0.6973
34 1 4.8700 -1.2434 -1.6991
35 1 5.5394 0.1305 -3.6513
36 1 5.4454 1.5992 -2.6500
37 1 7.9263 0.5290 -4.0111
38 1 7.8327 1.9969 -3.0088
39 1 9.4979 -0.4655 -2.3026
40 1 8.8759 2.1714 -0.9777
41 1 9.3418 0.6082 -0.2369
42 1 11.6732 0.9279 -0.7662
43 1 11.1649 2.5956 -0.3478
44 1 12.3225 2.1508 -2.7405
45 1 10.8794 3.2077 -2.6618
46 1 11.1255 0.3759 -3.6687
47 1 10.0137 1.6706 -4.1954
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000416388720.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:56:44
Heat of formation + Delta-G solvation = -135.517276 kcal
Electronic energy + Delta-G solvation = -25742.658312 eV
Core-core repulsion = 22052.161500 eV
Total energy + Delta-G solvation = -3690.496812 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 319.165 amu
Computer time = 0.66 seconds
Orbital eigenvalues (eV)
-39.07147 -37.34064 -36.79762 -36.40157 -35.55229 -32.64894 -32.12624 -29.94272
-29.81328 -28.89103 -25.79419 -24.70059 -24.63245 -23.30303 -20.91951 -20.60879
-19.87675 -18.34520 -17.61054 -17.37167 -16.83445 -16.46712 -15.94252 -15.63582
-15.51508 -15.22454 -14.33561 -14.24577 -13.79380 -13.62705 -13.50566 -13.31302
-12.95117 -12.73044 -12.11328 -12.02758 -11.93104 -11.81215 -11.74770 -11.66534
-11.55087 -11.45438 -11.35911 -11.34287 -11.24420 -10.97922 -10.83468 -10.80012
-10.70168 -10.57605 -10.41309 -10.06736 -9.80604 -9.74671 -9.26588 -8.44706
-8.07555 -6.56449 -4.19735 0.61388 3.08267 3.37491 3.43550 3.50064
3.58634 4.20148 4.35823 4.36897 4.42474 4.50340 4.53669 4.71774
4.87112 4.99486 5.07220 5.09251 5.12850 5.20875 5.21726 5.36157
5.41630 5.45351 5.47866 5.53227 5.57307 5.64370 5.76356 5.84844
5.91307 6.03299 6.05875 6.08623 6.14824 6.19390 6.37904 6.49560
6.56085 6.67008 6.97998 7.03322 7.28202 7.41789 7.92467 8.27286
8.79572 9.46618 10.78908
Molecular weight = 319.17amu
Principal moments of inertia in cm(-1)
A = 0.013763 B = 0.003441 C = 0.002984
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2033.938991 B = 8134.407288 C = 9380.104660
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.151 4.151
2 C 0.244 3.756
3 H 0.049 0.951
4 C -0.624 4.624
5 H 0.067 0.933
6 C 0.044 3.956
7 N -0.891 5.891
8 Si 1.023 2.977
9 H -0.282 1.282
10 H -0.278 1.278
11 H -0.272 1.272
12 N -0.975 5.975
13 C 0.106 3.894
14 S 2.611 3.389
15 O -0.968 6.968
16 O -0.956 6.956
17 C -0.638 4.638
18 C 0.079 3.921
19 O -0.374 6.374
20 C 0.062 3.938
21 C -0.092 4.092
22 C -0.116 4.116
23 C -0.127 4.127
24 C -0.125 4.125
25 C -0.118 4.118
26 H 0.061 0.939
27 H 0.028 0.972
28 H 0.049 0.951
29 H 0.271 0.729
30 H 0.047 0.953
31 H 0.053 0.947
32 H 0.081 0.919
33 H 0.146 0.854
34 H 0.134 0.866
35 H 0.059 0.941
36 H 0.062 0.938
37 H 0.049 0.951
38 H 0.052 0.948
39 H 0.080 0.920
40 H 0.068 0.932
41 H 0.070 0.930
42 H 0.065 0.935
43 H 0.066 0.934
44 H 0.064 0.936
45 H 0.065 0.935
46 H 0.067 0.933
47 H 0.065 0.935
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 13.805 3.113 -12.485 18.872
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.211 4.211
2 C 0.140 3.860
3 H 0.067 0.933
4 C -0.662 4.662
5 H 0.085 0.915
6 C -0.164 4.164
7 N -0.523 5.523
8 Si 0.849 3.151
9 H -0.207 1.207
10 H -0.204 1.204
11 H -0.198 1.198
12 N -0.814 5.814
13 C -0.041 4.041
14 S 2.702 3.298
15 O -0.959 6.959
16 O -0.946 6.946
17 C -0.764 4.764
18 C 0.001 3.999
19 O -0.293 6.293
20 C -0.014 4.014
21 C -0.111 4.111
22 C -0.154 4.154
23 C -0.165 4.165
24 C -0.162 4.162
25 C -0.156 4.156
26 H 0.080 0.920
27 H 0.047 0.953
28 H 0.068 0.932
29 H 0.081 0.919
30 H 0.065 0.935
31 H 0.072 0.928
32 H 0.100 0.900
33 H 0.165 0.835
34 H 0.153 0.847
35 H 0.078 0.922
36 H 0.080 0.920
37 H 0.068 0.932
38 H 0.070 0.930
39 H 0.099 0.901
40 H 0.087 0.913
41 H 0.088 0.912
42 H 0.084 0.916
43 H 0.084 0.916
44 H 0.083 0.917
45 H 0.084 0.916
46 H 0.086 0.914
47 H 0.084 0.916
Dipole moment (debyes) X Y Z Total
from point charges 13.295 4.651 -11.928 18.458
hybrid contribution 0.715 -1.542 -0.760 1.862
sum 14.010 3.110 -12.689 19.157
Atomic orbital electron populations
1.22362 0.98124 1.00514 1.00114 1.19012 0.91634 0.92901 0.82479
0.93294 1.22190 1.41660 1.11498 0.90893 0.91530 1.25619 0.93148
1.05626 0.91970 1.70855 1.43032 1.06480 1.31910 0.84349 0.77995
0.76130 0.76583 1.20725 1.20417 1.19758 1.57186 1.63125 1.21682
1.39389 1.21248 0.99341 0.81418 1.02053 1.04840 0.76395 0.74431
0.74092 1.93543 1.84167 1.75640 1.42526 1.93568 1.80996 1.33767
1.86291 1.30953 1.22265 1.11036 1.12173 1.22013 0.82965 0.99082
0.95885 1.87971 1.13654 1.74992 1.52723 1.22748 0.87915 0.96933
0.93852 1.21775 0.92300 1.01283 0.95696 1.22401 0.96020 1.00365
0.96598 1.22542 0.96781 1.00767 0.96407 1.22360 0.99732 0.98872
0.95279 1.22136 0.96688 0.98758 0.98009 0.92036 0.95274 0.93175
0.91929 0.93461 0.92844 0.90008 0.83537 0.84719 0.92241 0.91971
0.93244 0.92979 0.90132 0.91320 0.91164 0.91577 0.91553 0.91749
0.91613 0.91430 0.91616
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -3.28 9.01 37.16 0.33 -2.95 16
2 C 0.24 5.60 2.16 -69.08 -0.15 5.46 16
3 H 0.05 1.16 5.45 -51.93 -0.28 0.88 16
4 C -0.62 -16.09 8.30 -34.44 -0.29 -16.37 16
5 H 0.07 1.80 7.38 -52.48 -0.39 1.41 16
6 C 0.04 1.20 5.20 -17.82 -0.09 1.11 16
7 N -0.89 -25.75 13.70 55.43 0.76 -24.99 16
8 Si 1.02 24.09 26.44 -169.99 -4.49 19.59 16
9 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16
10 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16
11 H -0.27 -5.98 6.12 56.52 0.35 -5.64 16
12 N -0.97 -19.37 2.99 -115.86 -0.35 -19.71 16
13 C 0.11 1.83 9.06 59.85 0.54 2.37 16
14 S 2.61 47.42 5.37 -107.50 -0.58 46.85 16
15 O -0.97 -18.36 17.09 -57.54 -0.98 -19.35 16
16 O -0.96 -19.84 16.57 -57.54 -0.95 -20.79 16
17 C -0.64 -9.94 6.55 37.16 0.24 -9.69 16
18 C 0.08 1.10 5.95 37.16 0.22 1.32 16
19 O -0.37 -5.32 10.18 -35.23 -0.36 -5.68 16
20 C 0.06 0.68 4.98 37.16 0.19 0.87 16
21 C -0.09 -0.90 3.19 -89.50 -0.29 -1.19 16
22 C -0.12 -1.18 6.22 -25.03 -0.16 -1.34 16
23 C -0.13 -1.05 6.91 -24.70 -0.17 -1.22 16
24 C -0.12 -0.92 6.83 -25.07 -0.17 -1.09 16
25 C -0.12 -0.91 6.46 -25.62 -0.17 -1.08 16
26 H 0.06 1.36 5.44 -51.93 -0.28 1.08 16
27 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16
28 H 0.05 1.02 7.45 -51.93 -0.39 0.64 16
29 H 0.27 7.75 8.73 -40.82 -0.36 7.40 16
30 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16
31 H 0.05 0.79 7.79 -51.93 -0.40 0.39 16
32 H 0.08 1.49 6.92 -51.93 -0.36 1.13 16
33 H 0.15 2.41 8.14 -51.92 -0.42 1.99 16
34 H 0.13 1.92 8.14 -51.92 -0.42 1.50 16
35 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16
36 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16
37 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16
38 H 0.05 0.53 8.02 -51.93 -0.42 0.11 16
39 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16
40 H 0.07 0.74 7.77 -51.93 -0.40 0.34 16
41 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16
42 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16
43 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16
44 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16
45 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16
46 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16
47 H 0.07 0.46 7.67 -51.93 -0.40 0.07 16
LS Contribution 380.08 15.07 5.73 5.73
Total: -1.00 -31.17 380.08 -9.62 -40.79
By element:
Atomic # 1 Polarization: 9.81 SS G_CDS: -8.45 Total: 1.36 kcal
Atomic # 6 Polarization: -23.85 SS G_CDS: 0.05 Total: -23.80 kcal
Atomic # 7 Polarization: -45.11 SS G_CDS: 0.41 Total: -44.70 kcal
Atomic # 8 Polarization: -43.52 SS G_CDS: -2.30 Total: -45.82 kcal
Atomic # 14 Polarization: 24.09 SS G_CDS: -4.49 Total: 19.59 kcal
Atomic # 16 Polarization: 47.42 SS G_CDS: -0.58 Total: 46.85 kcal
Total LS contribution 5.73 Total: 5.73 kcal
Total: -31.17 -9.62 -40.79 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000416388720.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -94.728 kcal
(2) G-P(sol) polarization free energy of solvation -31.166 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.893 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.624 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.790 kcal
(6) G-S(sol) free energy of system = (1) + (5) -135.517 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.66 seconds