Wall clock time and date at job start Tue Mar 31 2020 12:56:43
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 H 1.08999 * 109.46987 * 2 1
4 4 C 1.50692 * 109.47267 * 120.00602 * 2 1 3
5 5 H 1.08003 * 120.00316 * 114.36808 * 4 2 1
6 6 C 1.37886 * 119.99877 * 294.36601 * 4 2 1
7 7 N 1.31510 * 119.99961 * 156.89610 * 6 4 2
8 8 Si 1.86796 * 119.99750 * 337.17309 * 6 4 2
9 9 H 1.48495 * 109.47179 * 179.72455 * 8 6 4
10 10 H 1.48502 * 109.47231 * 299.72156 * 8 6 4
11 11 H 1.48498 * 109.47554 * 59.72235 * 8 6 4
12 12 N 1.46509 * 109.47062 * 240.00243 * 2 1 3
13 13 C 1.46502 * 119.99604 * 300.00516 * 12 2 1
14 14 S 1.65598 * 119.99835 * 119.99654 * 12 2 1
15 15 O 1.42100 * 104.27533 * 206.07117 * 14 12 2
16 16 O 1.42098 * 104.27792 * 333.92888 * 14 12 2
17 17 C 1.81402 * 104.44785 * 90.00478 * 14 12 2
18 18 C 1.52996 * 109.47341 * 179.97438 * 17 14 12
19 19 O 1.42896 * 109.47342 * 180.02562 * 18 17 14
20 20 C 1.42896 * 114.00003 * 180.02562 * 19 18 17
21 21 C 1.53007 * 109.47300 * 179.97438 * 20 19 18
22 22 C 1.54266 * 110.02920 * 292.90907 * 21 20 19
23 23 C 1.54964 * 104.15799 * 217.13656 * 22 21 20
24 24 C 1.54892 * 102.77745 * 37.88284 * 23 22 21
25 25 C 1.53869 * 110.03364 * 175.68742 * 21 20 19
26 26 H 1.09002 * 109.47176 * 293.29860 * 1 2 3
27 27 H 1.09005 * 109.47375 * 53.29697 * 1 2 3
28 28 H 1.09000 * 109.47483 * 173.29600 * 1 2 3
29 29 H 0.97000 * 120.00294 * 355.20558 * 7 6 4
30 30 H 1.08992 * 109.47772 * 90.00121 * 13 12 2
31 31 H 1.09003 * 109.46297 * 209.99546 * 13 12 2
32 32 H 1.08994 * 109.47613 * 329.99192 * 13 12 2
33 33 H 1.09004 * 109.46596 * 299.99676 * 17 14 12
34 34 H 1.09002 * 109.47229 * 59.99720 * 17 14 12
35 35 H 1.09003 * 109.47130 * 300.00285 * 18 17 14
36 36 H 1.09002 * 109.47062 * 59.99771 * 18 17 14
37 37 H 1.09001 * 109.47064 * 299.99704 * 20 19 18
38 38 H 1.08997 * 109.47337 * 59.99942 * 20 19 18
39 39 H 1.08999 * 110.01347 * 54.29524 * 21 20 19
40 40 H 1.09002 * 110.48891 * 335.77915 * 22 21 20
41 41 H 1.08993 * 110.49203 * 98.42356 * 22 21 20
42 42 H 1.09004 * 110.71922 * 279.57236 * 23 22 21
43 43 H 1.08997 * 110.92865 * 156.29974 * 23 22 21
44 44 H 1.09005 * 110.48281 * 203.40696 * 24 23 22
45 45 H 1.08997 * 110.59390 * 80.82713 * 24 23 22
46 46 H 1.09002 * 110.03006 * 238.56810 * 25 21 20
47 47 H 1.08999 * 110.03565 * 359.95415 * 25 21 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 6 2.0323 -0.7105 1.2303
5 1 2.5762 -1.6386 1.1338
6 6 1.7977 -0.1757 2.4794
7 7 1.8081 -0.9531 3.5401
8 14 1.4573 1.6517 2.6639
9 1 1.2326 1.9711 4.0966
10 1 2.6208 2.4253 2.1609
11 1 0.2479 2.0116 1.8810
12 7 2.0183 -0.6906 -1.1963
13 6 1.6642 -2.0932 -1.4281
14 16 2.9703 0.1143 -2.2863
15 8 2.7431 -0.5611 -3.5157
16 8 2.6120 1.4797 -2.1234
17 6 4.6648 -0.1729 -1.7061
18 6 5.6504 0.5286 -2.6426
19 8 6.9853 0.3019 -2.1859
20 6 7.9890 0.9183 -2.9949
21 6 9.3712 0.6113 -2.4150
22 6 9.5378 1.3083 -1.0489
23 6 11.0202 1.7593 -1.0317
24 6 11.2612 2.2002 -2.4969
25 6 10.4667 1.1777 -3.3352
26 1 -0.3634 0.4065 0.9439
27 1 -0.3634 0.6142 -0.8239
28 1 -0.3634 -1.0206 -0.1200
29 1 1.9115 -1.9121 3.4376
30 1 0.7375 -2.1443 -1.9995
31 1 2.4627 -2.5818 -1.9866
32 1 1.5294 -2.5969 -0.4711
33 1 4.7757 0.2249 -0.6973
34 1 4.8700 -1.2434 -1.6991
35 1 5.5394 0.1305 -3.6513
36 1 5.4454 1.5992 -2.6500
37 1 7.9263 0.5290 -4.0111
38 1 7.8327 1.9969 -3.0088
39 1 9.4979 -0.4655 -2.3026
40 1 8.8759 2.1714 -0.9777
41 1 9.3418 0.6082 -0.2369
42 1 11.6732 0.9279 -0.7662
43 1 11.1649 2.5956 -0.3478
44 1 12.3225 2.1508 -2.7405
45 1 10.8794 3.2077 -2.6618
46 1 11.1255 0.3759 -3.6687
47 1 10.0137 1.6706 -4.1954
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000416388720.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:56:43
Heat of formation + Delta-G solvation = -156.022613 kcal
Electronic energy + Delta-G solvation = -25743.547490 eV
Core-core repulsion = 22052.161500 eV
Total energy + Delta-G solvation = -3691.385990 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 319.165 amu
Computer time = 0.68 seconds
Orbital eigenvalues (eV)
-39.90339 -38.34637 -38.21893 -38.05075 -37.07909 -34.62773 -33.20319 -31.58662
-30.77447 -29.56722 -27.31189 -26.63774 -25.45415 -24.44622 -22.38611 -21.57878
-20.60763 -19.86242 -19.50212 -18.79607 -18.08259 -17.61226 -17.13890 -16.89396
-16.48536 -16.17051 -15.89297 -15.45768 -15.23138 -15.02217 -14.68860 -14.55892
-14.21832 -13.94821 -13.70305 -13.56484 -13.48072 -13.29384 -13.23101 -13.01495
-12.91986 -12.64943 -12.43589 -12.32173 -12.22060 -12.00760 -11.96030 -11.91923
-11.85549 -11.70178 -11.63667 -11.51371 -11.35123 -11.19413 -10.70229 -10.42218
-9.80526 -8.68206 -6.31968 -0.82239 1.50992 1.53663 1.61201 1.73951
2.43321 2.48888 2.90231 3.02540 3.10318 3.47195 3.65882 3.69149
3.69251 3.87806 3.95353 4.05061 4.26591 4.35903 4.39361 4.45846
4.48887 4.54294 4.60412 4.65918 4.67712 4.75166 4.78100 4.82589
4.84202 4.87270 4.92408 5.03087 5.06959 5.09455 5.22738 5.30478
5.31824 5.43313 5.45747 5.52077 5.73338 5.99060 6.07472 6.11062
6.66923 7.40142 8.65140
Molecular weight = 319.17amu
Principal moments of inertia in cm(-1)
A = 0.013763 B = 0.003441 C = 0.002984
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2033.938991 B = 8134.407288 C = 9380.104660
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.152 4.152
2 C 0.243 3.757
3 H 0.046 0.954
4 C -0.612 4.612
5 H 0.045 0.955
6 C 0.000 4.000
7 N -0.925 5.925
8 Si 1.048 2.952
9 H -0.285 1.285
10 H -0.266 1.266
11 H -0.246 1.246
12 N -0.986 5.986
13 C 0.099 3.901
14 S 2.624 3.376
15 O -0.975 6.975
16 O -0.983 6.983
17 C -0.624 4.624
18 C 0.070 3.930
19 O -0.395 6.395
20 C 0.054 3.946
21 C -0.093 4.093
22 C -0.122 4.122
23 C -0.126 4.126
24 C -0.123 4.123
25 C -0.114 4.114
26 H 0.053 0.947
27 H 0.046 0.954
28 H 0.055 0.945
29 H 0.259 0.741
30 H 0.060 0.940
31 H 0.079 0.921
32 H 0.066 0.934
33 H 0.136 0.864
34 H 0.149 0.851
35 H 0.081 0.919
36 H 0.071 0.929
37 H 0.066 0.934
38 H 0.060 0.940
39 H 0.073 0.927
40 H 0.059 0.941
41 H 0.052 0.948
42 H 0.069 0.931
43 H 0.069 0.931
44 H 0.078 0.922
45 H 0.067 0.933
46 H 0.077 0.923
47 H 0.075 0.925
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 14.736 3.992 -14.503 21.058
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.212 4.212
2 C 0.137 3.863
3 H 0.063 0.937
4 C -0.651 4.651
5 H 0.063 0.937
6 C -0.202 4.202
7 N -0.560 5.560
8 Si 0.870 3.130
9 H -0.211 1.211
10 H -0.191 1.191
11 H -0.171 1.171
12 N -0.824 5.824
13 C -0.046 4.046
14 S 2.719 3.281
15 O -0.965 6.965
16 O -0.973 6.973
17 C -0.754 4.754
18 C -0.008 4.008
19 O -0.315 6.315
20 C -0.022 4.022
21 C -0.111 4.111
22 C -0.160 4.160
23 C -0.163 4.163
24 C -0.160 4.160
25 C -0.152 4.152
26 H 0.072 0.928
27 H 0.065 0.935
28 H 0.074 0.926
29 H 0.068 0.932
30 H 0.078 0.922
31 H 0.097 0.903
32 H 0.085 0.915
33 H 0.155 0.845
34 H 0.167 0.833
35 H 0.099 0.901
36 H 0.089 0.911
37 H 0.084 0.916
38 H 0.078 0.922
39 H 0.091 0.909
40 H 0.077 0.923
41 H 0.071 0.929
42 H 0.088 0.912
43 H 0.088 0.912
44 H 0.096 0.904
45 H 0.086 0.914
46 H 0.095 0.905
47 H 0.094 0.906
Dipole moment (debyes) X Y Z Total
from point charges 14.196 5.523 -13.982 20.677
hybrid contribution 0.519 -1.897 -0.198 1.977
sum 14.715 3.626 -14.180 20.755
Atomic orbital electron populations
1.22314 0.97071 1.01325 1.00445 1.18821 0.92506 0.92485 0.82456
0.93679 1.22324 1.40179 1.10456 0.92144 0.93713 1.26669 0.93013
1.08371 0.92105 1.70959 1.46145 1.05960 1.32901 0.84023 0.79467
0.72644 0.76840 1.21075 1.19125 1.17053 1.57161 1.64246 1.22573
1.38413 1.21406 1.01096 0.80304 1.01841 1.04355 0.76840 0.73441
0.73489 1.93531 1.84782 1.75534 1.42659 1.93529 1.82024 1.35229
1.86540 1.30732 1.20525 1.12276 1.11855 1.22147 0.82811 0.99613
0.96251 1.87938 1.14006 1.75622 1.53923 1.23008 0.87464 0.97375
0.94373 1.21814 0.92559 1.00892 0.95876 1.22418 0.97354 0.99678
0.96527 1.22540 0.95315 1.01014 0.97456 1.22370 1.00584 0.98826
0.94239 1.22133 0.96094 0.99147 0.97810 0.92810 0.93459 0.92579
0.93190 0.92156 0.90283 0.91502 0.84536 0.83322 0.90141 0.91086
0.91551 0.92216 0.90897 0.92256 0.92884 0.91230 0.91240 0.90355
0.91384 0.90454 0.90646
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -6.36 9.01 71.98 0.65 -5.71 16
2 C 0.24 10.92 2.16 44.24 0.10 11.01 16
3 H 0.05 2.09 5.45 -2.39 -0.01 2.07 16
4 C -0.61 -31.72 8.30 25.60 0.21 -31.51 16
5 H 0.04 2.47 7.38 -2.91 -0.02 2.45 16
6 C 0.00 0.02 5.20 84.66 0.44 0.46 16
7 N -0.93 -54.61 13.70 21.45 0.29 -54.32 16
8 Si 1.05 47.89 26.44 68.60 1.81 49.70 16
9 H -0.29 -13.12 7.11 99.48 0.71 -12.41 16
10 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16
11 H -0.25 -10.19 6.12 99.48 0.61 -9.58 16
12 N -0.99 -37.93 2.99 -520.45 -1.56 -39.49 16
13 C 0.10 3.30 9.06 127.77 1.16 4.46 16
14 S 2.62 91.02 5.37 -56.49 -0.30 90.72 16
15 O -0.97 -34.78 17.09 -127.65 -2.18 -36.96 16
16 O -0.98 -39.41 16.57 -127.65 -2.12 -41.53 16
17 C -0.62 -18.54 6.55 71.98 0.47 -18.07 16
18 C 0.07 1.82 5.95 71.98 0.43 2.25 16
19 O -0.40 -10.68 10.18 -148.98 -1.52 -12.19 16
20 C 0.05 1.08 4.98 71.98 0.36 1.44 16
21 C -0.09 -1.70 3.19 -10.07 -0.03 -1.73 16
22 C -0.12 -2.44 6.22 31.69 0.20 -2.24 16
23 C -0.13 -1.92 6.91 31.91 0.22 -1.70 16
24 C -0.12 -1.53 6.83 31.67 0.22 -1.32 16
25 C -0.11 -1.49 6.46 31.32 0.20 -1.29 16
26 H 0.05 2.30 5.44 -2.39 -0.01 2.29 16
27 H 0.05 1.78 8.14 -2.38 -0.02 1.76 16
28 H 0.06 2.23 7.45 -2.39 -0.02 2.21 16
29 H 0.26 15.35 8.73 -92.71 -0.81 14.54 16
30 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16
31 H 0.08 2.19 7.79 -2.39 -0.02 2.17 16
32 H 0.07 2.42 6.92 -2.39 -0.02 2.40 16
33 H 0.14 4.41 8.14 -2.39 -0.02 4.39 16
34 H 0.15 3.98 8.14 -2.39 -0.02 3.96 16
35 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16
36 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16
37 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16
38 H 0.06 1.10 8.02 -2.39 -0.02 1.08 16
39 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16
40 H 0.06 1.27 7.77 -2.39 -0.02 1.25 16
41 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16
42 H 0.07 1.01 8.14 -2.38 -0.02 0.99 16
43 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16
44 H 0.08 0.78 8.14 -2.38 -0.02 0.76 16
45 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16
46 H 0.08 0.87 8.14 -2.39 -0.02 0.86 16
47 H 0.07 0.85 7.67 -2.39 -0.02 0.84 16
Total: -1.00 -65.99 380.08 -0.17 -66.16
By element:
Atomic # 1 Polarization: 21.09 SS G_CDS: 0.79 Total: 21.87 kcal
Atomic # 6 Polarization: -48.57 SS G_CDS: 4.62 Total: -43.96 kcal
Atomic # 7 Polarization: -92.54 SS G_CDS: -1.26 Total: -93.81 kcal
Atomic # 8 Polarization: -84.87 SS G_CDS: -5.81 Total: -90.68 kcal
Atomic # 14 Polarization: 47.89 SS G_CDS: 1.81 Total: 49.70 kcal
Atomic # 16 Polarization: 91.02 SS G_CDS: -0.30 Total: 90.72 kcal
Total: -65.99 -0.17 -66.16 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000416388720.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -89.867 kcal
(2) G-P(sol) polarization free energy of solvation -65.990 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.857 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.166 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.156 kcal
(6) G-S(sol) free energy of system = (1) + (5) -156.023 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.68 seconds