Wall clock time and date at job start Tue Mar 31 2020 12:54:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47285 * 2 1 4 4 C 1.50704 * 109.47307 * 120.00769 * 2 1 3 5 5 H 1.07997 * 120.00055 * 120.00004 * 4 2 1 6 6 C 1.37875 * 119.99583 * 299.99326 * 4 2 1 7 7 N 1.31515 * 120.00246 * 0.02562 * 6 4 2 8 8 Si 1.86805 * 119.99864 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.46713 * 90.00295 * 8 6 4 10 10 H 1.48496 * 109.47295 * 210.00595 * 8 6 4 11 11 H 1.48505 * 109.47087 * 330.00639 * 8 6 4 12 12 N 1.46506 * 109.47090 * 240.00485 * 2 1 3 13 13 C 1.34771 * 119.99740 * 84.72265 * 12 2 1 14 14 O 1.21278 * 120.00398 * 0.27945 * 13 12 2 15 15 C 1.50705 * 119.99871 * 180.27566 * 13 12 2 16 16 C 1.50694 * 109.47069 * 179.97438 * 15 13 12 17 17 C 1.38164 * 120.03581 * 264.99987 * 16 15 13 18 18 C 1.38241 * 120.06145 * 179.97438 * 17 16 15 19 19 C 1.38283 * 120.10948 * 359.97438 * 18 17 16 20 20 C 1.38119 * 120.05713 * 0.02562 * 19 18 17 21 21 C 1.38712 * 120.02595 * 84.72956 * 16 15 13 22 22 O 1.35906 * 120.05700 * 359.97438 * 21 16 15 23 23 C 1.42896 * 116.99970 * 174.53155 * 22 21 16 24 24 H 1.08998 * 110.44133 * 321.72872 * 23 22 21 25 25 C 1.54812 * 110.48525 * 199.04118 * 23 22 21 26 26 C 1.54994 * 102.09461 * 220.44572 * 25 23 22 27 27 O 1.44385 * 103.49242 * 37.02115 * 26 25 23 28 28 C 1.43751 * 106.97167 * 319.94319 * 27 26 25 29 29 H 1.09004 * 109.46485 * 299.99076 * 1 2 3 30 30 H 1.08996 * 109.47121 * 59.99633 * 1 2 3 31 31 H 1.08999 * 109.47285 * 179.97438 * 1 2 3 32 32 H 0.97003 * 119.99573 * 179.97438 * 7 6 4 33 33 H 0.96994 * 120.00096 * 264.99829 * 12 2 1 34 34 H 1.09001 * 109.47091 * 300.00351 * 15 13 12 35 35 H 1.09005 * 109.46851 * 60.00460 * 15 13 12 36 36 H 1.08010 * 119.96713 * 359.97438 * 17 16 15 37 37 H 1.08001 * 119.94625 * 180.02562 * 18 17 16 38 38 H 1.08002 * 119.96792 * 180.02562 * 19 18 17 39 39 H 1.08007 * 120.02684 * 179.97438 * 20 19 18 40 40 H 1.09007 * 110.90701 * 338.64112 * 25 23 22 41 41 H 1.08997 * 110.90883 * 102.24206 * 25 23 22 42 42 H 1.09004 * 110.61495 * 278.52096 * 26 25 23 43 43 H 1.08993 * 110.75774 * 155.58948 * 26 25 23 44 44 H 1.08997 * 109.87806 * 267.08721 * 28 27 26 45 45 H 1.08999 * 109.87477 * 145.93786 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7106 1.2304 5 1 2.6533 -1.5886 1.1312 6 6 1.6994 -0.2396 2.4827 7 7 0.9430 0.8295 2.6035 8 14 2.3215 -1.1207 4.0078 9 1 3.6299 -0.5463 4.4122 10 1 1.3433 -0.9497 5.1119 11 1 2.4860 -2.5666 3.7117 12 7 2.0183 -0.6905 -1.1963 13 6 2.1417 -0.0194 -2.3585 14 8 1.8533 1.1573 -2.4129 15 6 2.6382 -0.7313 -3.5906 16 6 2.6830 0.2357 -4.7455 17 6 1.6184 0.3152 -5.6226 18 6 1.6588 1.2024 -6.6820 19 6 2.7640 2.0128 -6.8665 20 6 3.8309 1.9371 -5.9925 21 6 3.7909 1.0507 -4.9258 22 8 4.8368 0.9787 -4.0610 23 6 5.9926 1.7583 -4.3745 24 1 6.1766 1.7513 -5.4489 25 6 7.2282 1.2284 -3.6069 26 6 7.9342 2.5412 -3.1821 27 8 6.8379 3.4285 -2.8732 28 6 5.8230 3.2030 -3.8659 29 1 -0.3632 0.5137 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 0.7084 1.1606 3.4845 33 1 2.2490 -1.6316 -1.1528 34 1 3.6382 -1.1235 -3.4055 35 1 1.9642 -1.5534 -3.8315 36 1 0.7539 -0.3164 -5.4804 37 1 0.8254 1.2634 -7.3662 38 1 2.7930 2.7054 -7.6946 39 1 4.6941 2.5700 -6.1373 40 1 6.9252 0.6497 -2.7342 41 1 7.8682 0.6366 -4.2612 42 1 8.5306 2.9392 -4.0031 43 1 8.5557 2.3781 -2.3017 44 1 5.9495 3.9037 -4.6911 45 1 4.8356 3.3258 -3.4209 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000449812596.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:54:34 Heat of formation + Delta-G solvation = -96.718330 kcal Electronic energy + Delta-G solvation = -27213.290400 eV Core-core repulsion = 23389.032085 eV Total energy + Delta-G solvation = -3824.258315 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.69976 -39.28643 -38.36259 -37.01201 -34.71346 -32.79071 -32.24076 -31.66839 -29.90956 -29.22272 -28.86492 -26.86501 -25.18611 -23.49835 -22.87744 -21.99990 -21.01426 -20.61115 -19.27938 -18.26190 -17.04250 -16.79663 -16.65084 -15.89615 -15.69052 -15.47120 -15.09513 -14.94837 -14.51119 -14.42459 -14.06158 -13.99245 -13.24179 -13.00680 -12.97617 -12.83682 -12.47005 -12.31138 -12.13458 -11.95569 -11.71816 -11.59230 -11.28536 -11.22932 -11.02201 -10.91146 -10.89913 -10.70186 -10.60338 -10.24446 -10.17750 -9.84956 -9.06740 -8.98323 -8.68407 -8.48098 -8.05388 -7.79019 -6.06359 -4.15243 1.36643 1.50736 3.06048 3.28259 3.34465 3.36319 3.56591 3.70371 3.76720 4.17996 4.29716 4.52057 4.58835 4.61709 4.77807 4.82744 4.88289 4.97791 5.05248 5.18510 5.25767 5.33876 5.41802 5.42940 5.48007 5.60354 5.66845 5.72938 5.75388 5.78369 5.86131 6.12026 6.34503 6.46352 6.58320 6.64015 6.83832 6.89574 7.03557 7.22847 7.43938 7.56766 7.65240 7.77140 7.99801 8.22198 8.77935 8.86609 9.26771 9.52737 10.99681 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.011393 B = 0.003964 C = 0.003174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2457.102826 B = 7062.211997 C = 8818.434456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.265 3.735 3 H 0.047 0.953 4 C -0.531 4.531 5 H 0.060 0.940 6 C 0.066 3.934 7 N -0.884 5.884 8 Si 0.901 3.099 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.274 1.274 12 N -0.712 5.712 13 C 0.506 3.494 14 O -0.548 6.548 15 C -0.099 4.099 16 C -0.083 4.083 17 C -0.071 4.071 18 C -0.157 4.157 19 C -0.086 4.086 20 C -0.211 4.211 21 C 0.142 3.858 22 O -0.292 6.292 23 C 0.054 3.946 24 H 0.086 0.914 25 C -0.150 4.150 26 C 0.047 3.953 27 O -0.367 6.367 28 C 0.024 3.976 29 H 0.089 0.911 30 H 0.014 0.986 31 H 0.025 0.975 32 H 0.263 0.737 33 H 0.387 0.613 34 H 0.098 0.902 35 H 0.094 0.906 36 H 0.127 0.873 37 H 0.121 0.879 38 H 0.121 0.879 39 H 0.123 0.877 40 H 0.097 0.903 41 H 0.090 0.910 42 H 0.062 0.938 43 H 0.100 0.900 44 H 0.066 0.934 45 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.860 -1.199 -19.326 21.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.164 3.836 3 H 0.065 0.935 4 C -0.570 4.570 5 H 0.079 0.921 6 C -0.137 4.137 7 N -0.522 5.522 8 Si 0.728 3.272 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.199 1.199 12 N -0.360 5.360 13 C 0.291 3.709 14 O -0.426 6.426 15 C -0.140 4.140 16 C -0.084 4.084 17 C -0.089 4.089 18 C -0.175 4.175 19 C -0.104 4.104 20 C -0.230 4.230 21 C 0.097 3.903 22 O -0.206 6.206 23 C -0.003 4.003 24 H 0.104 0.896 25 C -0.188 4.188 26 C -0.030 4.030 27 O -0.286 6.286 28 C -0.053 4.053 29 H 0.107 0.893 30 H 0.033 0.967 31 H 0.044 0.956 32 H 0.074 0.926 33 H 0.219 0.781 34 H 0.116 0.884 35 H 0.113 0.887 36 H 0.145 0.855 37 H 0.139 0.861 38 H 0.139 0.861 39 H 0.141 0.859 40 H 0.116 0.884 41 H 0.108 0.892 42 H 0.080 0.920 43 H 0.118 0.882 44 H 0.084 0.916 45 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 9.569 -0.177 -18.820 21.114 hybrid contribution 0.418 -0.841 0.544 1.085 sum 9.987 -1.017 -18.276 20.852 Atomic orbital electron populations 1.22069 0.98635 0.98959 1.00806 1.18695 0.90869 0.93979 0.80099 0.93522 1.21227 1.32252 1.13124 0.90387 0.92145 1.24888 0.94851 0.94974 0.99017 1.69911 1.35935 1.22548 1.23759 0.86466 0.78608 0.79829 0.82287 1.20578 1.21109 1.19870 1.46488 1.65589 1.13493 1.10452 1.20230 0.78641 0.87579 0.84461 1.90655 1.50795 1.16005 1.85171 1.20574 1.03695 0.97554 0.92136 1.18725 0.93076 0.98964 0.97612 1.20862 0.96496 0.97999 0.93542 1.20964 0.98832 0.98293 0.99419 1.20842 0.93089 0.98153 0.98301 1.21142 1.01278 1.02636 0.97944 1.18748 0.88004 0.94444 0.89097 1.86231 1.22663 1.64770 1.46904 1.23820 0.85281 0.91254 0.99994 0.89598 1.23221 0.94423 0.99098 1.02028 1.23558 0.90283 0.87817 1.01319 1.88970 1.27603 1.61463 1.50566 1.23819 0.94431 0.94626 0.92457 0.89250 0.96735 0.95573 0.92650 0.78096 0.88369 0.88746 0.85492 0.86054 0.86111 0.85887 0.88425 0.89160 0.91983 0.88197 0.91599 0.88102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.76 9.26 37.16 0.34 -3.41 16 2 C 0.27 7.01 2.56 -69.08 -0.18 6.83 16 3 H 0.05 1.44 7.58 -51.93 -0.39 1.04 16 4 C -0.53 -14.47 8.73 -34.44 -0.30 -14.77 16 5 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 6 C 0.07 1.81 5.30 -17.82 -0.09 1.72 16 7 N -0.88 -25.56 11.32 55.43 0.63 -24.93 16 8 Si 0.90 21.06 29.54 -169.99 -5.02 16.04 16 9 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 10 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 12 N -0.71 -15.40 5.07 -54.93 -0.28 -15.68 16 13 C 0.51 10.55 7.78 -10.99 -0.09 10.47 16 14 O -0.55 -13.77 15.70 5.56 0.09 -13.68 16 15 C -0.10 -1.53 5.55 -29.04 -0.16 -1.69 16 16 C -0.08 -1.27 4.39 -104.48 -0.46 -1.73 16 17 C -0.07 -0.96 9.68 -39.61 -0.38 -1.34 16 18 C -0.16 -1.87 10.04 -39.56 -0.40 -2.27 16 19 C -0.09 -0.99 10.04 -39.61 -0.40 -1.38 16 20 C -0.21 -2.66 8.75 -39.43 -0.34 -3.00 16 21 C 0.14 2.13 6.59 -39.22 -0.26 1.88 16 22 O -0.29 -4.43 8.91 -19.45 -0.17 -4.61 16 23 C 0.05 0.62 2.90 -25.20 -0.07 0.55 16 24 H 0.09 0.78 6.58 -51.93 -0.34 0.44 16 25 C -0.15 -1.49 6.90 -24.72 -0.17 -1.66 16 26 C 0.05 0.46 7.72 38.21 0.29 0.76 16 27 O -0.37 -5.23 11.52 -35.23 -0.41 -5.64 16 28 C 0.02 0.31 6.65 37.73 0.25 0.56 16 29 H 0.09 2.49 6.07 -51.93 -0.32 2.17 16 30 H 0.01 0.35 8.14 -51.93 -0.42 -0.08 16 31 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 33 H 0.39 7.19 8.54 -40.82 -0.35 6.84 16 34 H 0.10 1.39 7.70 -51.93 -0.40 0.99 16 35 H 0.09 1.17 8.05 -51.93 -0.42 0.75 16 36 H 0.13 1.49 8.06 -52.48 -0.42 1.07 16 37 H 0.12 1.14 8.06 -52.49 -0.42 0.71 16 38 H 0.12 1.05 8.06 -52.49 -0.42 0.62 16 39 H 0.12 1.26 5.69 -52.48 -0.30 0.96 16 40 H 0.10 1.14 8.09 -51.93 -0.42 0.72 16 41 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 44 H 0.07 0.68 8.06 -51.93 -0.42 0.26 16 45 H 0.10 1.60 7.97 -51.93 -0.41 1.19 16 LS Contribution 371.47 15.07 5.60 5.60 Total: -1.00 -34.29 371.47 -8.67 -42.96 By element: Atomic # 1 Polarization: 15.13 SS G_CDS: -6.69 Total: 8.44 kcal Atomic # 6 Polarization: -6.09 SS G_CDS: -2.41 Total: -8.50 kcal Atomic # 7 Polarization: -40.96 SS G_CDS: 0.35 Total: -40.61 kcal Atomic # 8 Polarization: -23.44 SS G_CDS: -0.49 Total: -23.93 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -34.29 -8.67 -42.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449812596.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.756 kcal (2) G-P(sol) polarization free energy of solvation -34.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds