Wall clock time and date at job start Tue Mar 31 2020 12:54:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47285 * 2 1 4 4 C 1.50704 * 109.47307 * 120.00769 * 2 1 3 5 5 H 1.07997 * 120.00055 * 120.00004 * 4 2 1 6 6 C 1.37875 * 119.99583 * 299.99326 * 4 2 1 7 7 N 1.31515 * 120.00246 * 0.02562 * 6 4 2 8 8 Si 1.86805 * 119.99864 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.46713 * 90.00295 * 8 6 4 10 10 H 1.48496 * 109.47295 * 210.00595 * 8 6 4 11 11 H 1.48505 * 109.47087 * 330.00639 * 8 6 4 12 12 N 1.46506 * 109.47090 * 240.00485 * 2 1 3 13 13 C 1.34771 * 119.99740 * 84.72265 * 12 2 1 14 14 O 1.21278 * 120.00398 * 0.27945 * 13 12 2 15 15 C 1.50705 * 119.99871 * 180.27566 * 13 12 2 16 16 C 1.50694 * 109.47069 * 179.97438 * 15 13 12 17 17 C 1.38164 * 120.03581 * 264.99987 * 16 15 13 18 18 C 1.38241 * 120.06145 * 179.97438 * 17 16 15 19 19 C 1.38283 * 120.10948 * 359.97438 * 18 17 16 20 20 C 1.38119 * 120.05713 * 0.02562 * 19 18 17 21 21 C 1.38712 * 120.02595 * 84.72956 * 16 15 13 22 22 O 1.35906 * 120.05700 * 359.97438 * 21 16 15 23 23 C 1.42896 * 116.99970 * 174.53155 * 22 21 16 24 24 H 1.08998 * 110.44133 * 321.72872 * 23 22 21 25 25 C 1.54812 * 110.48525 * 199.04118 * 23 22 21 26 26 C 1.54994 * 102.09461 * 220.44572 * 25 23 22 27 27 O 1.44385 * 103.49242 * 37.02115 * 26 25 23 28 28 C 1.43751 * 106.97167 * 319.94319 * 27 26 25 29 29 H 1.09004 * 109.46485 * 299.99076 * 1 2 3 30 30 H 1.08996 * 109.47121 * 59.99633 * 1 2 3 31 31 H 1.08999 * 109.47285 * 179.97438 * 1 2 3 32 32 H 0.97003 * 119.99573 * 179.97438 * 7 6 4 33 33 H 0.96994 * 120.00096 * 264.99829 * 12 2 1 34 34 H 1.09001 * 109.47091 * 300.00351 * 15 13 12 35 35 H 1.09005 * 109.46851 * 60.00460 * 15 13 12 36 36 H 1.08010 * 119.96713 * 359.97438 * 17 16 15 37 37 H 1.08001 * 119.94625 * 180.02562 * 18 17 16 38 38 H 1.08002 * 119.96792 * 180.02562 * 19 18 17 39 39 H 1.08007 * 120.02684 * 179.97438 * 20 19 18 40 40 H 1.09007 * 110.90701 * 338.64112 * 25 23 22 41 41 H 1.08997 * 110.90883 * 102.24206 * 25 23 22 42 42 H 1.09004 * 110.61495 * 278.52096 * 26 25 23 43 43 H 1.08993 * 110.75774 * 155.58948 * 26 25 23 44 44 H 1.08997 * 109.87806 * 267.08721 * 28 27 26 45 45 H 1.08999 * 109.87477 * 145.93786 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7106 1.2304 5 1 2.6533 -1.5886 1.1312 6 6 1.6994 -0.2396 2.4827 7 7 0.9430 0.8295 2.6035 8 14 2.3215 -1.1207 4.0078 9 1 3.6299 -0.5463 4.4122 10 1 1.3433 -0.9497 5.1119 11 1 2.4860 -2.5666 3.7117 12 7 2.0183 -0.6905 -1.1963 13 6 2.1417 -0.0194 -2.3585 14 8 1.8533 1.1573 -2.4129 15 6 2.6382 -0.7313 -3.5906 16 6 2.6830 0.2357 -4.7455 17 6 1.6184 0.3152 -5.6226 18 6 1.6588 1.2024 -6.6820 19 6 2.7640 2.0128 -6.8665 20 6 3.8309 1.9371 -5.9925 21 6 3.7909 1.0507 -4.9258 22 8 4.8368 0.9787 -4.0610 23 6 5.9926 1.7583 -4.3745 24 1 6.1766 1.7513 -5.4489 25 6 7.2282 1.2284 -3.6069 26 6 7.9342 2.5412 -3.1821 27 8 6.8379 3.4285 -2.8732 28 6 5.8230 3.2030 -3.8659 29 1 -0.3632 0.5137 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 0.7084 1.1606 3.4845 33 1 2.2490 -1.6316 -1.1528 34 1 3.6382 -1.1235 -3.4055 35 1 1.9642 -1.5534 -3.8315 36 1 0.7539 -0.3164 -5.4804 37 1 0.8254 1.2634 -7.3662 38 1 2.7930 2.7054 -7.6946 39 1 4.6941 2.5700 -6.1373 40 1 6.9252 0.6497 -2.7342 41 1 7.8682 0.6366 -4.2612 42 1 8.5306 2.9392 -4.0031 43 1 8.5557 2.3781 -2.3017 44 1 5.9495 3.9037 -4.6911 45 1 4.8356 3.3258 -3.4209 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000449812596.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:54:33 Heat of formation + Delta-G solvation = -120.180182 kcal Electronic energy + Delta-G solvation = -27214.307782 eV Core-core repulsion = 23389.032085 eV Total energy + Delta-G solvation = -3825.275697 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.70454 -40.57204 -39.72804 -38.01139 -36.68606 -34.33190 -33.86247 -32.59808 -31.13566 -30.69877 -29.91011 -28.16116 -27.33640 -24.44586 -23.86653 -23.36233 -22.26656 -21.79705 -21.06711 -19.30530 -18.79705 -17.72044 -17.67275 -17.41565 -17.15595 -16.88331 -16.42211 -16.08655 -15.82085 -15.56039 -15.47412 -15.29282 -14.68704 -14.41124 -14.20471 -13.97614 -13.86493 -13.73282 -13.29205 -13.16740 -13.11368 -12.93650 -12.82156 -12.71541 -12.54464 -12.27989 -12.20908 -12.14980 -12.09282 -11.84137 -11.58018 -11.11748 -10.77869 -10.75512 -10.57847 -9.77091 -9.70334 -9.06802 -8.17822 -6.35781 0.38225 0.53012 1.43360 1.44675 1.55397 1.91171 2.13571 2.36029 2.61187 2.86246 3.00064 3.12497 3.32611 3.70085 3.72889 3.79433 3.93405 4.06894 4.11758 4.20710 4.24654 4.29543 4.38708 4.54101 4.56876 4.60235 4.66363 4.73555 4.74987 4.77792 4.86414 4.91214 4.99533 5.08971 5.11207 5.39481 5.44160 5.51049 5.61794 5.62280 5.69813 5.75486 5.91870 5.93033 6.10297 6.47588 6.72640 7.02395 7.32536 7.63033 8.88677 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.011393 B = 0.003964 C = 0.003174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2457.102826 B = 7062.211997 C = 8818.434456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.272 3.728 3 H -0.011 1.011 4 C -0.546 4.546 5 H 0.073 0.927 6 C 0.013 3.987 7 N -0.919 5.919 8 Si 0.974 3.026 9 H -0.279 1.279 10 H -0.282 1.282 11 H -0.257 1.257 12 N -0.709 5.709 13 C 0.502 3.498 14 O -0.596 6.596 15 C -0.083 4.083 16 C -0.117 4.117 17 C -0.083 4.083 18 C -0.161 4.161 19 C -0.084 4.084 20 C -0.217 4.217 21 C 0.120 3.880 22 O -0.319 6.319 23 C 0.049 3.951 24 H 0.118 0.882 25 C -0.146 4.146 26 C 0.043 3.957 27 O -0.405 6.405 28 C 0.023 3.977 29 H 0.065 0.935 30 H 0.010 0.990 31 H 0.042 0.958 32 H 0.265 0.735 33 H 0.404 0.596 34 H 0.110 0.890 35 H 0.128 0.872 36 H 0.140 0.860 37 H 0.149 0.851 38 H 0.154 0.846 39 H 0.144 0.856 40 H 0.071 0.929 41 H 0.125 0.875 42 H 0.094 0.906 43 H 0.107 0.893 44 H 0.095 0.905 45 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.180 -2.698 -21.253 24.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.168 3.832 3 H 0.007 0.993 4 C -0.584 4.584 5 H 0.091 0.909 6 C -0.187 4.187 7 N -0.558 5.558 8 Si 0.798 3.202 9 H -0.205 1.205 10 H -0.208 1.208 11 H -0.181 1.181 12 N -0.358 5.358 13 C 0.290 3.710 14 O -0.478 6.478 15 C -0.123 4.123 16 C -0.118 4.118 17 C -0.101 4.101 18 C -0.179 4.179 19 C -0.102 4.102 20 C -0.235 4.235 21 C 0.075 3.925 22 O -0.233 6.233 23 C -0.007 4.007 24 H 0.136 0.864 25 C -0.184 4.184 26 C -0.033 4.033 27 O -0.325 6.325 28 C -0.054 4.054 29 H 0.084 0.916 30 H 0.029 0.971 31 H 0.061 0.939 32 H 0.074 0.926 33 H 0.239 0.761 34 H 0.128 0.872 35 H 0.146 0.854 36 H 0.157 0.843 37 H 0.166 0.834 38 H 0.172 0.828 39 H 0.162 0.838 40 H 0.090 0.910 41 H 0.144 0.856 42 H 0.112 0.888 43 H 0.125 0.875 44 H 0.113 0.887 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 10.906 -1.722 -20.775 23.527 hybrid contribution 0.021 -0.276 1.081 1.116 sum 10.926 -1.998 -19.694 22.610 Atomic orbital electron populations 1.21872 0.98262 0.99470 0.99381 1.18279 0.91116 0.91556 0.82210 0.99294 1.21554 1.32523 1.13530 0.90838 0.90870 1.25843 0.94843 0.95601 1.02433 1.70070 1.37056 1.24078 1.24562 0.85323 0.77731 0.79260 0.77893 1.20476 1.20781 1.18119 1.46267 1.65694 1.14224 1.09632 1.21236 0.77182 0.87139 0.85489 1.90625 1.52704 1.18432 1.86018 1.20494 1.04651 0.97911 0.89240 1.18927 0.94327 1.00205 0.98313 1.21154 0.96381 0.98711 0.93836 1.21355 0.99834 0.97513 0.99219 1.21299 0.92279 0.97977 0.98610 1.21451 1.02528 1.02218 0.97324 1.19059 0.88186 0.95302 0.89927 1.86187 1.23697 1.65552 1.47905 1.24093 0.84699 0.89997 1.01914 0.86418 1.23269 0.94291 0.99261 1.01561 1.23846 0.89426 0.87110 1.02922 1.88917 1.29074 1.62743 1.51761 1.23816 0.92276 0.96662 0.92610 0.91643 0.97118 0.93853 0.92585 0.76071 0.87221 0.85410 0.84264 0.83370 0.82844 0.83796 0.91004 0.85636 0.88756 0.87503 0.88727 0.92488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.96 9.26 71.98 0.67 -6.29 16 2 C 0.27 14.93 2.56 44.24 0.11 15.04 16 3 H -0.01 -0.71 7.58 -2.39 -0.02 -0.73 16 4 C -0.55 -30.13 8.73 25.60 0.22 -29.91 16 5 H 0.07 3.76 7.74 -2.91 -0.02 3.73 16 6 C 0.01 0.70 5.30 84.65 0.45 1.15 16 7 N -0.92 -54.72 11.32 21.45 0.24 -54.47 16 8 Si 0.97 43.20 29.54 68.60 2.03 45.23 16 9 H -0.28 -12.27 7.11 99.48 0.71 -11.57 16 10 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 11 H -0.26 -10.67 7.11 99.48 0.71 -9.96 16 12 N -0.71 -31.26 5.07 -446.08 -2.26 -33.52 16 13 C 0.50 21.50 7.78 87.66 0.68 22.18 16 14 O -0.60 -31.56 15.70 -3.02 -0.05 -31.61 16 15 C -0.08 -2.52 5.55 29.10 0.16 -2.36 16 16 C -0.12 -3.54 4.39 -19.77 -0.09 -3.63 16 17 C -0.08 -2.15 9.68 22.25 0.22 -1.93 16 18 C -0.16 -3.49 10.04 22.28 0.22 -3.27 16 19 C -0.08 -1.72 10.04 22.25 0.22 -1.49 16 20 C -0.22 -5.11 8.75 22.37 0.20 -4.92 16 21 C 0.12 3.58 6.59 22.51 0.15 3.73 16 22 O -0.32 -9.82 8.91 -92.50 -0.82 -10.64 16 23 C 0.05 1.10 2.90 31.58 0.09 1.20 16 24 H 0.12 1.84 6.58 -2.39 -0.02 1.82 16 25 C -0.15 -2.74 6.90 31.89 0.22 -2.52 16 26 C 0.04 0.78 7.72 72.66 0.56 1.34 16 27 O -0.41 -11.74 11.52 -148.98 -1.72 -13.46 16 28 C 0.02 0.61 6.65 72.35 0.48 1.10 16 29 H 0.06 3.79 6.07 -2.38 -0.01 3.77 16 30 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 31 H 0.04 2.08 8.14 -2.39 -0.02 2.07 16 32 H 0.27 14.88 8.31 -92.71 -0.77 14.11 16 33 H 0.40 14.85 8.54 -92.71 -0.79 14.06 16 34 H 0.11 3.04 7.70 -2.39 -0.02 3.02 16 35 H 0.13 2.93 8.05 -2.38 -0.02 2.91 16 36 H 0.14 3.08 8.06 -2.91 -0.02 3.06 16 37 H 0.15 2.32 8.06 -2.91 -0.02 2.30 16 38 H 0.15 2.07 8.06 -2.91 -0.02 2.04 16 39 H 0.14 2.61 5.69 -2.91 -0.02 2.59 16 40 H 0.07 1.71 8.09 -2.38 -0.02 1.69 16 41 H 0.13 1.42 8.14 -2.39 -0.02 1.40 16 42 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 43 H 0.11 1.76 8.14 -2.39 -0.02 1.74 16 44 H 0.09 1.84 8.06 -2.39 -0.02 1.82 16 45 H 0.06 1.97 7.97 -2.39 -0.02 1.95 16 Total: -1.00 -79.42 371.47 2.20 -77.23 By element: Atomic # 1 Polarization: 31.64 SS G_CDS: 0.21 Total: 31.84 kcal Atomic # 6 Polarization: -15.17 SS G_CDS: 4.57 Total: -10.60 kcal Atomic # 7 Polarization: -85.98 SS G_CDS: -2.02 Total: -88.00 kcal Atomic # 8 Polarization: -53.12 SS G_CDS: -2.59 Total: -55.70 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 2.03 Total: 45.23 kcal Total: -79.42 2.20 -77.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449812596.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.954 kcal (2) G-P(sol) polarization free energy of solvation -79.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds